mRNA_E-fasciculatus_F_contig16060.4148.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16060.4148.1
Unique NamemRNA_E-fasciculatus_F_contig16060.4148.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16060.4148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16060contigE-fasciculatus_F_contig16060:2013..2817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size805
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928073.9401705-CDS-E-fasciculatus_F_contig16060:2012..24411622928073.9401705-CDS-E-fasciculatus_F_contig16060:2012..2441Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16060 2013..2441 +
1695995812.37553-CDS-E-fasciculatus_F_contig16060:2012..24411695995812.37553-CDS-E-fasciculatus_F_contig16060:2012..2441Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16060 2013..2441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928073.9528408-UTR-E-fasciculatus_F_contig16060:2441..28171622928073.9528408-UTR-E-fasciculatus_F_contig16060:2441..2817Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16060 2442..2817 +
1695995812.3897357-UTR-E-fasciculatus_F_contig16060:2441..28171695995812.3897357-UTR-E-fasciculatus_F_contig16060:2441..2817Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16060 2442..2817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16060.4148.1prot_E-fasciculatus_F_contig16060.4148.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16060 2013..2441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16060.4148.1

>prot_E-fasciculatus_F_contig16060.4148.1 ID=prot_E-fasciculatus_F_contig16060.4148.1|Name=mRNA_E-fasciculatus_F_contig16060.4148.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=143bp
GINNGFFVYTFSFLHNHRQTRLSRPQKPALWNRYHERLLRRQSWWTQPLS
TLPGRRVAKERNGSIRQRGGVLLSGTFRNDVRSSAAKILNNILARVHVAF
GRQNFPALLLVTRCNCRESTSRSWSMRKRTRAAARALLAAPT*
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mRNA from alignment at E-fasciculatus_F_contig16060:2013..2817+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16060.4148.1 ID=mRNA_E-fasciculatus_F_contig16060.4148.1|Name=mRNA_E-fasciculatus_F_contig16060.4148.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=805bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16060:2013..2817+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGATCAACAACGGCTTCTTTGTGTACACGTTTTCCTTCCTCCACAACCA
CCGACAAACCCGTCTCTCTCGTCCACAAAAACCAGCCCTCTGGAATCGAT
ACCATGAGAGGCTTTTGCGCCGCCAGAGTTGGTGGACCCAACCCCTCTCA
ACCCTGCCCGGGAGGCGTGTTGCCAAGGAAAGAAATGGAAGTATCCGCCA
ACGAGGCGGCGTCCTCTTGTCGGGAACGTTCAGGAACGACGTTCGGTCCT
CGGCGGCAAAAATACTAAATAATATTCTCGCGCGTGTACATGTGGCTTTC
GGTCGACAAAATTTCCCCGCACTTCTTCTAGTAACACGTTGCAATTGCCG
AGAGAGCACCTCACGAAGCTGGTCTATGCGGAAACGAACGCGTGCGGCTG
CGAGGGCCCTCTTAGCAGCACCCACGTGACGGCGCAAACACGCCGCTGCC
GGTTCTTTTACTGCTCAAGCTGCTGCCACGGTGTATAATACTGCGGGTGA
TACTGTATGACGCCAAAAGTGTATGCATACCACAAGCATTTAGATATAGG
TGGGGCGCAACAAAACTAGTACCACCTGTAATAGCAAGAGGGACGCCCTG
GCCTGCGCTGAGGCTCTCCGTAACACACGATTAACACAACCAACCGTGAT
TGGAACGCTGCACGGCAAATACCCCCATTGCAAGGCAGTTCGTCGCTTGA
TCAAAGCCCCGGGGCTTGTTCTTTCTCTAACATCAGCCCAAACTACCCCC
TACCCTTGAAAACAAGTGACGCTCTCCGACCCTACTGCCGATCAAAATCT
TGAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16060:2013..2817+

>mRNA_E-fasciculatus_F_contig16060.4148.1 ID=mRNA_E-fasciculatus_F_contig16060.4148.1|Name=mRNA_E-fasciculatus_F_contig16060.4148.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16060:2013..2817+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGATCAACAACGGCTTCTTTGTGTACACGTTTTCCTTCCTCCACAACCA
CCGACAAACCCGTCTCTCTCGTCCACAAAAACCAGCCCTCTGGAATCGAT
ACCATGAGAGGCTTTTGCGCCGCCAGAGTTGGTGGACCCAACCCCTCTCA
ACCCTGCCCGGGAGGCGTGTTGCCAAGGAAAGAAATGGAAGTATCCGCCA
ACGAGGCGGCGTCCTCTTGTCGGGAACGTTCAGGAACGACGTTCGGTCCT
CGGCGGCAAAAATACTAAATAATATTCTCGCGCGTGTACATGTGGCTTTC
GGTCGACAAAATTTCCCCGCACTTCTTCTAGTAACACGTTGCAATTGCCG
AGAGAGCACCTCACGAAGCTGGTCTATGCGGAAACGAACGCGTGCGGCTG
CGAGGGCCCTCTTAGCAGCACCCACGTGAGGGATCAACAACGGCTTCTTT
GTGTACACGTTTTCCTTCCTCCACAACCACCGACAAACCCGTCTCTCTCG
TCCACAAAAACCAGCCCTCTGGAATCGATACCATGAGAGGCTTTTGCGCC
GCCAGAGTTGGTGGACCCAACCCCTCTCAACCCTGCCCGGGAGGCGTGTT
GCCAAGGAAAGAAATGGAAGTATCCGCCAACGAGGCGGCGTCCTCTTGTC
GGGAACGTTCAGGAACGACGTTCGGTCCTCGGCGGCAAAAATACTAAATA
ATATTCTCGCGCGTGTACATGTGGCTTTCGGTCGACAAAATTTCCCCGCA
CTTCTTCTAGTAACACGTTGCAATTGCCGAGAGAGCACCTCACGAAGCTG
GTCTATGCGGAAACGAACGCGTGCGGCTGCGAGGGCCCTCTTAGCAGCAC
CCACGTGA
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