mRNA_E-fasciculatus_F_contig16054.4144.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI) HSP 1 Score: 601 bits (1550), Expect = 8.290e-212 Identity = 307/347 (88.47%), Postives = 318/347 (91.64%), Query Frame = 1
Query: 1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLLVESREEDTPAARPCGVEPADRRTPTFFRRADQR*HHPPYRDIGAIPAGVRRGPGRGLSADRARMGPTAGYSTGEGAGGRRGCWQAEEKGNTRDG*QSPP 1041
+KLFEDRNFLVTVVFDGRPPPAK GTSQHRRERR+KSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARI GEVYIAPG+ADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRD LVEVVKN RGELVGR VRQRLLFQPTAWSFLR+GDAH WLRQLHGIH PVDEGLD TPLPEPT RRRLLL+A+IVGNDFAKFKNVGPVTAARLAF D+ES VWAASLLPFDAVVGDLASRLLVESREEDTPAARP GVEPA+RRTPTF RR DQ +HPPYRD+GAIPAGV GPGR LSADRARMGPTAGYST EGAGGRRGCWQAEE+ PP
Sbjct: 1 MKLFEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGKADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTGRRRLLLFAVIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGDLASRLLVESREEDTPAARPRGVEPAERRTPTFVRRPDQGGNHPPYRDVGAIPAGVPCGPGRCLSADRARMGPTAGYSTNEGAGGRRGCWQAEERATLETASTRPP 347
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI) HSP 1 Score: 481 bits (1238), Expect = 5.420e-161 Identity = 244/260 (93.85%), Postives = 250/260 (96.15%), Query Frame = 1
Query: 1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLLVESREEDTPAAR 780
+KLFEDRNFLVTVVFDGRPPPAK GTSQHRRERR+KSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARI GEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKN RGELVGRCVRQRLLFQPTAWSFLR+GDAH WLRQLHGIH PVDEGLD TPLPEPTARRRLLL+A+IVGNDFAKFKNVGPVTAARLAF D+ES VWAASLLPFDAVVG LASRLLVESREEDTPA R
Sbjct: 28 MKLFEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTARRRLLLFAIIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGYLASRLLVESREEDTPAVR 287
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE) HSP 1 Score: 481 bits (1238), Expect = 5.550e-160 Identity = 241/259 (93.05%), Postives = 251/259 (96.91%), Query Frame = 1
Query: 1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLLVESREEDTPAA 777
VKLFEDRNFLVTVVFDG+PPPAKGGTSQHRRERREKSAQQARALH AGGCP+E+NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATG NVYVYANDSDLTVLGVRDLLVEVVKNTRGEL+GRCVRQRLLFQPTAWSFLR+GDAH WLRQLHGIH+PVDEGLD TPLPEPTARRRL+L+AMIVGNDFAKFKNVGPVTAARLAF D+ S VWA SLLPFDAVVGDLASRLLVES+EEDTPAA
Sbjct: 273 VKLFEDRNFLVTVVFDGQPPPAKGGTSQHRRERREKSAQQARALHAAGGCPMEVNKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGPNVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLVLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAA 531
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI) HSP 1 Score: 400 bits (1029), Expect = 8.040e-133 Identity = 203/226 (89.82%), Postives = 209/226 (92.48%), Query Frame = 1
Query: 1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSES 678
+KLFEDRNFLVTVVFDGRPPPAK GTSQHRRERR+KSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARI GEV IAPGEADPQL VFQDIHLATGANVYVYANDSD TVLGV DLLVEVVKN RGELVGRCVRQRLLFQPT WSFLR+GD LRQLHGIH PVDEG D TPLPEPTARRRLLL+A+IVG DFAKFKNVGPVTAARLAF D+ES
Sbjct: 1 MKLFEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVNIAPGEADPQLAVFQDIHLATGANVYVYANDSDFTVLGVLDLLVEVVKNARGELVGRCVRQRLLFQPTTWSFLRSGDVRGRLRQLHGIHQPVDEGFDYTPLPEPTARRRLLLFAIIVGKDFAKFKNVGPVTAARLAFVDTES 226
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI) HSP 1 Score: 282 bits (721), Expect = 7.670e-86 Identity = 166/260 (63.85%), Postives = 174/260 (66.92%), Query Frame = 1
Query: 1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLLVESREEDTPAAR 780
+KLFED NFLVTVVFDGRPPP K GTSQHRRERR+KSAQQARALHDAGGCPVEINKLASAACAF+GRVTAEIATR RA I GEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKN T+R + ++ ARLAF D+ES VWAASL PFDAVVGDLASRLLVESREEDTPAAR
Sbjct: 28 MKLFEDHNFLVTVVFDGRPPPVKSGTSQHRRERRKKSAQQARALHDAGGCPVEINKLASAACAFNGRVTAEIATRSRALIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNAT-----------------------------------------------------TSRNSKMSDQLL---------------PARLAFVDTESGVWAASLQPFDAVVGDLASRLLVESREEDTPAAR 219
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE) HSP 1 Score: 263 bits (672), Expect = 8.960e-77 Identity = 143/260 (55.00%), Postives = 177/260 (68.08%), Query Frame = 1
Query: 1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSV-WAASLLPFDAVVGDLASRLLVESREEDTPAA 777
V FE R F VTVV DG PPAK TS+ RR +RE +A +AR L GG EINK AS AC FD RV A +AT LR +I GEVYIAP EADPQ+V+FQDI+L TG VYVYANDSDL VLGVR LL +V G L G C+R RL+FQP W+F + + +LRQLHG+ L +PL E ARRRL L+A + GNDFA FKN+GPV AA++AFE E A+++ F+A+VG+LA ++ +S+EE+TPAA
Sbjct: 67 VSRFESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIFQPPEWAFAIDAEGYAFLRQLHGLPRGHTPNLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVSFEALVGNLARIVVQDSKEEETPAA 326
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: A0A6H5LMS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMS4_9PHAE) HSP 1 Score: 109 bits (273), Expect = 4.010e-26 Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 2
Query: 974 AGGEDAGRQKKRATPETASSRPPNAGSRTSRPRGPPDANNYREHGFSRLPGETGDYTKWTVPKLREFLSVS 1186
A GEDA R KK+ TPE ASSRPPNA SRTSR RGP + NNYR HGFSRLPGET DYTKWTVPKLREFLS +
Sbjct: 3 AAGEDASRPKKKVTPEIASSRPPNASSRTSRARGPQETNNYRAHGFSRLPGETEDYTKWTVPKLREFLSAT 73
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI) HSP 1 Score: 109 bits (272), Expect = 8.750e-23 Identity = 66/155 (42.58%), Postives = 83/155 (53.55%), Query Frame = 2
Query: 758 RRTRLLRGPVVWNPLIGELQHFSGAPTSDDITRHTGTLELSPLASAVARGEVCPLTGREWDPPLGTAQAKEQAGGEDAGRQKKRATPETASSRPP-------------NAGSRTSRPRGPPDANNYREHGFSRLPGETGDYTKWTVPKLREFLSV 1183
R + VVW+PL L+HFS A +S IT+ TGTLE S +AS +A GEV P TG+ W PPL + ++ +RAT S PP ++ SR D NNYR+HGFSRLPG D+ KWTV +LREFLSV
Sbjct: 113 RSQNMFHNAVVWDPLKNTLRHFSCAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVWAPPLLETRIAQEF---------RRATRRAGSQMPPXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYRKHGFSRLPGAEEDFNKWTVAQLREFLSV 258
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7G6L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L7_ECTSI) HSP 1 Score: 102 bits (255), Expect = 5.930e-21 Identity = 65/157 (41.40%), Postives = 81/157 (51.59%), Query Frame = 2
Query: 758 RRTRLLRGPVVWNPLIGELQHFSGAPTSDDITRHTGTLELSPLASAVARGEVCPLTGREWDPPLGTAQAKEQAGGEDAGRQKKRATPETASSRPP---------------NAGSRTSRPRGPPDANNYREHGFSRLPGETGDYTKWTVPKLREFLSV 1183
R + VVW PL L+HFS A +S IT+ TGTLE S +AS +A GEV P TG+ W PPL A+ ++ +RAT S P ++ SR D NNY +HGFSRLPG D+ KWTV +LREFLSV
Sbjct: 113 RSHNMFHNAVVWGPLKNTLRHFSCAASSLAITKDTGTLEFSYVASGIASGEVSPTTGQVWAPPLLEARMAQEF---------RRATRRPGSQPPXXXXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSV 260 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16054.4144.1 >prot_E-fasciculatus_F_contig16054.4144.1 ID=prot_E-fasciculatus_F_contig16054.4144.1|Name=mRNA_E-fasciculatus_F_contig16054.4144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=84bp MIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLLback to top mRNA from alignment at E-fasciculatus_F_contig16054:1129..2761+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16054.4144.1 ID=mRNA_E-fasciculatus_F_contig16054.4144.1|Name=mRNA_E-fasciculatus_F_contig16054.4144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1633bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16054:1129..2761+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16054:1129..2761+ >mRNA_E-fasciculatus_F_contig16054.4144.1 ID=mRNA_E-fasciculatus_F_contig16054.4144.1|Name=mRNA_E-fasciculatus_F_contig16054.4144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16054:1129..2761+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |