mRNA_E-fasciculatus_F_contig16054.4144.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16054.4144.1
Unique NamemRNA_E-fasciculatus_F_contig16054.4144.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 601 bits (1550), Expect = 8.290e-212
Identity = 307/347 (88.47%), Postives = 318/347 (91.64%), Query Frame = 1
Query:    1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLLVESREEDTPAARPCGVEPADRRTPTFFRRADQR*HHPPYRDIGAIPAGVRRGPGRGLSADRARMGPTAGYSTGEGAGGRRGCWQAEEKGNTRDG*QSPP 1041
            +KLFEDRNFLVTVVFDGRPPPAK GTSQHRRERR+KSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARI GEVYIAPG+ADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRD LVEVVKN RGELVGR VRQRLLFQPTAWSFLR+GDAH WLRQLHGIH PVDEGLD TPLPEPT RRRLLL+A+IVGNDFAKFKNVGPVTAARLAF D+ES VWAASLLPFDAVVGDLASRLLVESREEDTPAARP GVEPA+RRTPTF RR DQ  +HPPYRD+GAIPAGV  GPGR LSADRARMGPTAGYST EGAGGRRGCWQAEE+         PP
Sbjct:    1 MKLFEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGKADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTGRRRLLLFAVIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGDLASRLLVESREEDTPAARPRGVEPAERRTPTFVRRPDQGGNHPPYRDVGAIPAGVPCGPGRCLSADRARMGPTAGYSTNEGAGGRRGCWQAEERATLETASTRPP 347          
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 481 bits (1238), Expect = 5.420e-161
Identity = 244/260 (93.85%), Postives = 250/260 (96.15%), Query Frame = 1
Query:    1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLLVESREEDTPAAR 780
            +KLFEDRNFLVTVVFDGRPPPAK GTSQHRRERR+KSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARI GEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKN RGELVGRCVRQRLLFQPTAWSFLR+GDAH WLRQLHGIH PVDEGLD TPLPEPTARRRLLL+A+IVGNDFAKFKNVGPVTAARLAF D+ES VWAASLLPFDAVVG LASRLLVESREEDTPA R
Sbjct:   28 MKLFEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTARRRLLLFAIIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGYLASRLLVESREEDTPAVR 287          
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 481 bits (1238), Expect = 5.550e-160
Identity = 241/259 (93.05%), Postives = 251/259 (96.91%), Query Frame = 1
Query:    1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLLVESREEDTPAA 777
            VKLFEDRNFLVTVVFDG+PPPAKGGTSQHRRERREKSAQQARALH AGGCP+E+NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATG NVYVYANDSDLTVLGVRDLLVEVVKNTRGEL+GRCVRQRLLFQPTAWSFLR+GDAH WLRQLHGIH+PVDEGLD TPLPEPTARRRL+L+AMIVGNDFAKFKNVGPVTAARLAF D+ S VWA SLLPFDAVVGDLASRLLVES+EEDTPAA
Sbjct:  273 VKLFEDRNFLVTVVFDGQPPPAKGGTSQHRRERREKSAQQARALHAAGGCPMEVNKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGPNVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLVLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAA 531          
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 8.040e-133
Identity = 203/226 (89.82%), Postives = 209/226 (92.48%), Query Frame = 1
Query:    1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSES 678
            +KLFEDRNFLVTVVFDGRPPPAK GTSQHRRERR+KSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARI GEV IAPGEADPQL VFQDIHLATGANVYVYANDSD TVLGV DLLVEVVKN RGELVGRCVRQRLLFQPT WSFLR+GD    LRQLHGIH PVDEG D TPLPEPTARRRLLL+A+IVG DFAKFKNVGPVTAARLAF D+ES
Sbjct:    1 MKLFEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVNIAPGEADPQLAVFQDIHLATGANVYVYANDSDFTVLGVLDLLVEVVKNARGELVGRCVRQRLLFQPTTWSFLRSGDVRGRLRQLHGIHQPVDEGFDYTPLPEPTARRRLLLFAIIVGKDFAKFKNVGPVTAARLAFVDTES 226          
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 7.670e-86
Identity = 166/260 (63.85%), Postives = 174/260 (66.92%), Query Frame = 1
Query:    1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLLVESREEDTPAAR 780
            +KLFED NFLVTVVFDGRPPP K GTSQHRRERR+KSAQQARALHDAGGCPVEINKLASAACAF+GRVTAEIATR RA I GEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKN                                                       T+R   +   ++                ARLAF D+ES VWAASL PFDAVVGDLASRLLVESREEDTPAAR
Sbjct:   28 MKLFEDHNFLVTVVFDGRPPPVKSGTSQHRRERRKKSAQQARALHDAGGCPVEINKLASAACAFNGRVTAEIATRSRALIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNAT-----------------------------------------------------TSRNSKMSDQLL---------------PARLAFVDTESGVWAASLQPFDAVVGDLASRLLVESREEDTPAAR 219          
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 8.960e-77
Identity = 143/260 (55.00%), Postives = 177/260 (68.08%), Query Frame = 1
Query:    1 VKLFEDRNFLVTVVFDGRPPPAKGGTSQHRRERREKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELVGRCVRQRLLFQPTAWSFLRTGDAHRWLRQLHGIHSPVDEGLDCTPLPEPTARRRLLLYAMIVGNDFAKFKNVGPVTAARLAFEDSESSV-WAASLLPFDAVVGDLASRLLVESREEDTPAA 777
            V  FE R F VTVV DG  PPAK  TS+ RR +RE +A +AR L   GG   EINK AS AC FD RV A +AT LR +I GEVYIAP EADPQ+V+FQDI+L TG  VYVYANDSDL VLGVR LL +V     G L G C+R RL+FQP  W+F    + + +LRQLHG+       L  +PL E  ARRRL L+A + GNDFA FKN+GPV AA++AFE  E      A+++ F+A+VG+LA  ++ +S+EE+TPAA
Sbjct:   67 VSRFESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIFQPPEWAFAIDAEGYAFLRQLHGLPRGHTPNLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVSFEALVGNLARIVVQDSKEEETPAA 326          
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: A0A6H5LMS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMS4_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.010e-26
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 2
Query:  974 AGGEDAGRQKKRATPETASSRPPNAGSRTSRPRGPPDANNYREHGFSRLPGETGDYTKWTVPKLREFLSVS 1186
            A GEDA R KK+ TPE ASSRPPNA SRTSR RGP + NNYR HGFSRLPGET DYTKWTVPKLREFLS +
Sbjct:    3 AAGEDASRPKKKVTPEIASSRPPNASSRTSRARGPQETNNYRAHGFSRLPGETEDYTKWTVPKLREFLSAT 73          
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 8.750e-23
Identity = 66/155 (42.58%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  758 RRTRLLRGPVVWNPLIGELQHFSGAPTSDDITRHTGTLELSPLASAVARGEVCPLTGREWDPPLGTAQAKEQAGGEDAGRQKKRATPETASSRPP-------------NAGSRTSRPRGPPDANNYREHGFSRLPGETGDYTKWTVPKLREFLSV 1183
            R   +    VVW+PL   L+HFS A +S  IT+ TGTLE S +AS +A GEV P TG+ W PPL   +  ++          +RAT    S  PP                ++ SR     D NNYR+HGFSRLPG   D+ KWTV +LREFLSV
Sbjct:  113 RSQNMFHNAVVWDPLKNTLRHFSCAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVWAPPLLETRIAQEF---------RRATRRAGSQMPPXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYRKHGFSRLPGAEEDFNKWTVAQLREFLSV 258          
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Match: D7G6L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L7_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.930e-21
Identity = 65/157 (41.40%), Postives = 81/157 (51.59%), Query Frame = 2
Query:  758 RRTRLLRGPVVWNPLIGELQHFSGAPTSDDITRHTGTLELSPLASAVARGEVCPLTGREWDPPLGTAQAKEQAGGEDAGRQKKRATPETASSRPP---------------NAGSRTSRPRGPPDANNYREHGFSRLPGETGDYTKWTVPKLREFLSV 1183
            R   +    VVW PL   L+HFS A +S  IT+ TGTLE S +AS +A GEV P TG+ W PPL  A+  ++          +RAT    S  P                   ++ SR     D NNY +HGFSRLPG   D+ KWTV +LREFLSV
Sbjct:  113 RSHNMFHNAVVWGPLKNTLRHFSCAASSLAITKDTGTLEFSYVASGIASGEVSPTTGQVWAPPLLEARMAQEF---------RRATRRPGSQPPXXXXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSV 260          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16054.4144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G4G5_ECTSI8.290e-21288.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0K2_ECTSI5.420e-16193.85Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A6H5KVY6_9PHAE5.550e-16093.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZU5_ECTSI8.040e-13389.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZG7_ECTSI7.670e-8663.85Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KFX7_9PHAE8.960e-7755.00Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5LMS4_9PHAE4.010e-2678.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQM4_ECTSI8.750e-2342.58Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G6L7_ECTSI5.930e-2141.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16054contigE-fasciculatus_F_contig16054:1129..2761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.7e-22
Seed eggNOG ortholog2880.D7G0K2
KEGG koko:K10746
KEGG Pathwayko03430,map03430
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
EggNOG OGsCOG0258@1,KOG2518@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPIN domain-like
Ec32 orthologEc-00_007660.1
Exons3
Model size1189
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16054.4144.1prot_E-fasciculatus_F_contig16054.4144.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16054 1723..2021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928073.5003126-UTR-E-fasciculatus_F_contig16054:1128..17221622928073.5003126-UTR-E-fasciculatus_F_contig16054:1128..1722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16054 1129..1722 +
1695995812.2110147-UTR-E-fasciculatus_F_contig16054:1128..17221695995812.2110147-UTR-E-fasciculatus_F_contig16054:1128..1722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16054 1129..1722 +
1622928073.5371535-UTR-E-fasciculatus_F_contig16054:2021..20381622928073.5371535-UTR-E-fasciculatus_F_contig16054:2021..2038Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16054 2022..2038 +
1695995812.2442894-UTR-E-fasciculatus_F_contig16054:2021..20381695995812.2442894-UTR-E-fasciculatus_F_contig16054:2021..2038Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16054 2022..2038 +
1622928073.5473518-UTR-E-fasciculatus_F_contig16054:2435..27611622928073.5473518-UTR-E-fasciculatus_F_contig16054:2435..2761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16054 2436..2761 +
1695995812.254775-UTR-E-fasciculatus_F_contig16054:2435..27611695995812.254775-UTR-E-fasciculatus_F_contig16054:2435..2761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16054 2436..2761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928073.5147946-CDS-E-fasciculatus_F_contig16054:1722..19091622928073.5147946-CDS-E-fasciculatus_F_contig16054:1722..1909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16054 1723..1909 +
1695995812.2245872-CDS-E-fasciculatus_F_contig16054:1722..19091695995812.2245872-CDS-E-fasciculatus_F_contig16054:1722..1909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16054 1723..1909 +
1622928073.5272167-CDS-E-fasciculatus_F_contig16054:1956..20211622928073.5272167-CDS-E-fasciculatus_F_contig16054:1956..2021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16054 1957..2021 +
1695995812.2347019-CDS-E-fasciculatus_F_contig16054:1956..20211695995812.2347019-CDS-E-fasciculatus_F_contig16054:1956..2021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16054 1957..2021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16054.4144.1

>prot_E-fasciculatus_F_contig16054.4144.1 ID=prot_E-fasciculatus_F_contig16054.4144.1|Name=mRNA_E-fasciculatus_F_contig16054.4144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=84bp
MIVGNDFAKFKNVGPVTAARLAFEDSESSVWAASLLPFDAVVGDLASRLL
VESREEDTPAARPCGVEPADRRTPTFFRRADQR*
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mRNA from alignment at E-fasciculatus_F_contig16054:1129..2761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16054.4144.1 ID=mRNA_E-fasciculatus_F_contig16054.4144.1|Name=mRNA_E-fasciculatus_F_contig16054.4144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1633bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16054:1129..2761+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGAAGCTCTTTGAAGACCGCAATTTCCTAGTGACGGTAGTGTTCGACGG TCGGCCGCCTCCGGCCAAGGGTGGGACATCTCAACACCGACGAGAGAGGA GGGAGAAGAGTGCACAACAGGCGCGCGCTCTACACGACGCCGGTGGGTGT CCTGTGGAAATCAACAAGTTGGCCAGCGCTGCATGTGCTTTCGACGGTCG AGTCACCGCTGAGATCGCAACGCGCTTGAGAGCCCGTATCGGGGGGGAGG TTTATATCGCCCCAGGCGAAGCGGATCCACAGCTTGTAGTTTTCCAGGAC ATCCATCTCGCAACAGGGGCGAACGTGTACGTGTATGCCAATGACTCCGA CTTGACAGTTCTTGGGGTGCGGGATCTGTTGGTGGAAGTGGTCAAGAACA CGAGAGGAGAGCTTGTCGGGAGATGCGTCCGGCAGAGGCTGCTCTTCCAA CCCACGGCATGGTCCTTCCTCCGGACTGGGGATGCTCATAGGTGGCTGCG CCAGCTGCACGGAATACACTCGCCAGTTGACGAGGGCCTAGACTGCACGC CTCTACCGGAACCGACTGCCCGCCGCCGCCTCCTCTTGTACGCCATGATC GTTGGCAACGACTTCGCGAAATTCAAAAATGTTGGACCTGTTACTGCGGC AAGACTAGCTTTCGAAGACTCCGAGAGCAGTGTCTGGGCGGCATCTTTGC TGCCATTCGATGCGGTAGTGGGAGACCTGGCCTCCAGGCTGCTGGTGGAG TCCAGGGAGGAGGACACGCCTGCTGCGCGGCGTGAGGTTGAGATCCGACT GCGCGCCTGCCACGCCATGTTTACACAGCCTGTGGTGTGGAACCCGCTGA TCGGCGAACTCCAACATTTTTCCGGCGCGCCGACCAGCGATGACATCACC CGCCATACAGGTCAGTGTTACAATTGTAGTGGCGTGTGTAGGAATGTTCC TCATACATAAGACCAGCTTTTGAATGGTGTTTCCCGACGTCACCCTACTT ATAGCCGGGCGCCAGCAGTGAGACCTTCTGCGTGCAGCAAGGAGAGCTGC TGTACCTTCAAACATTATGCAGCCTTTCTACAAGTAGTCTAGTCAACAAT TTAATTGTAGATTTGTTGAAAACTCAGCAGGTAAAACTGAATTCAACCTC AACCGGCATTTGCTCGTCCCGTGATTACACAGCCCGCTGTACTGCATATT GTATAAACCTGCTATACTGATGTGTATGCAGATACATTTAGTGACGGCGT TGCATATACTATCGCCTGAACTGACTTCATTGTCATGCTCGCATCCCGCA CGTACAGGGACATTGGAGCTATCCCCGCTGGCGTCCGCCGTGGCCCGGGG AGAGGTCTGTCCGCTGACCGGGCGCGAATGGGACCCACCGCTGGGTACAG CACAGGCGAAGGAGCAGGCGGGAGGCGAGGATGCTGGCAGGCAGAAGAAA AGGGCAACACCCGAGACGGCTAGCAGTCGCCCCCCGAATGCCGGTAGCAG GACGTCTCGCCCTCGAGGTCCTCCAGACGCAAACAACTACCGCGAGCACG GCTTCAGCAGACTCCCTGGGGAGACTGGAGATTACACCAAGTGGACCGTG CCTAAGCTTCGCGAGTTTCTAAGTGTGAGTAAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16054:1129..2761+

>mRNA_E-fasciculatus_F_contig16054.4144.1 ID=mRNA_E-fasciculatus_F_contig16054.4144.1|Name=mRNA_E-fasciculatus_F_contig16054.4144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16054:1129..2761+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCGTTGGCAACGACTTCGCGAAATTCAAAAATGTTGGACCTGTTAC
TGCGGCAAGACTAGCTTTCGAAGACTCCGAGAGCAGTGTCTGGGCGGCAT
CTTTGCTGCCATTCGATGCGGTAGTGGGAGACCTGGCCTCCAGGCTGCTG
GTGGAGTCCAGGGAGGAGGACACGCCTGCTGCGCGGCATGATCGTTGGCA
ACGACTTCGCGAAATTCAAAAATGTTGGACCTGTTACTGCGGCAAGACTA
GCTTTCGAAGACTCCGAGAGCAGTGTCTGGGCGGCATCTTTGCTGCCATT
CGATGCGGTAGTGGGAGACCTGGCCTCCAGGCTGCTGGTGGAGTCCAGGG
AGGAGGACACGCCTGCTGCGCGGCCCTGTGGTGTGGAACCCGCTGATCGG
CGAACTCCAACATTTTTCCGGCGCGCCGACCAGCGATGACCTGTGGTGTG
GAACCCGCTGATCGGCGAACTCCAACATTTTTCCGGCGCGCCGACCAGCG
ATGA
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