mRNA_E-fasciculatus_F_contig16051.4143.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16051.4143.1
Unique NamemRNA_E-fasciculatus_F_contig16051.4143.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16051.4143.1 vs. uniprot
Match: D7G6M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M1_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 6.250e-68
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GGPFVENIGPWFQTRTMATSAHGDVGHTKGFREAEGNAERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQVG 342
            GGPFVENIGPWFQTR MATSAHGDVGHTKGFREAEGN ERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQVG
Sbjct:  510 GGPFVENIGPWFQTRAMATSAHGDVGHTKGFREAEGNPERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQVG 623
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BLAST of mRNA_E-fasciculatus_F_contig16051.4143.1 vs. uniprot
Match: A0A6H5KKS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS1_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 5.720e-64
Identity = 109/113 (96.46%), Postives = 109/113 (96.46%), Query Frame = 1 
Query:    1 GGPFVENIGPWFQTRTMATSAHGDVGHTKGFREAEGNAERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQV 339
            GGPFVENIGPWFQTR MATSAHGDVGH KG REAEGN ERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQV
Sbjct:  953 GGPFVENIGPWFQTRAMATSAHGDVGHAKGLREAEGNPERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQV 1065
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16051.4143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6M1_ECTSI6.250e-6898.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKS1_9PHAE5.720e-6496.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16051contigE-fasciculatus_F_contig16051:640..2646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-00_009950.1
Hectar predicted targeting categoryother localisation
Exons3
Model size342
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16051.4143.1prot_E-fasciculatus_F_contig16051.4143.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16051 640..2646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928073.43003-CDS-E-fasciculatus_F_contig16051:639..7321622928073.43003-CDS-E-fasciculatus_F_contig16051:639..732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16051 640..732 -
1695995812.1711483-CDS-E-fasciculatus_F_contig16051:639..7321695995812.1711483-CDS-E-fasciculatus_F_contig16051:639..732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16051 640..732 -
1622928073.4408174-CDS-E-fasciculatus_F_contig16051:1293..14251622928073.4408174-CDS-E-fasciculatus_F_contig16051:1293..1425Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16051 1294..1425 -
1695995812.1845288-CDS-E-fasciculatus_F_contig16051:1293..14251695995812.1845288-CDS-E-fasciculatus_F_contig16051:1293..1425Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16051 1294..1425 -
1622928073.4534695-CDS-E-fasciculatus_F_contig16051:2529..26461622928073.4534695-CDS-E-fasciculatus_F_contig16051:2529..2646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16051 2530..2646 -
1695995812.2013905-CDS-E-fasciculatus_F_contig16051:2529..26461695995812.2013905-CDS-E-fasciculatus_F_contig16051:2529..2646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16051 2530..2646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16051.4143.1

>prot_E-fasciculatus_F_contig16051.4143.1 ID=prot_E-fasciculatus_F_contig16051.4143.1|Name=mRNA_E-fasciculatus_F_contig16051.4143.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
GGPFVENIGPWFQTRTMATSAHGDVGHTKGFREAEGNAERSGLMTRLGED
AASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYN
RDTIFDEEVANQVG
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mRNA from alignment at E-fasciculatus_F_contig16051:640..2646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16051.4143.1 ID=mRNA_E-fasciculatus_F_contig16051.4143.1|Name=mRNA_E-fasciculatus_F_contig16051.4143.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2007bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16051:640..2646- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGCCCTTCGTGGAGAACATCGGCCCCTGGTTCCAGACGAGGACGAT
GGCGACGTCGGCGCACGGGGATGTGGGCCACACCAAGGGGTTCCGCGAGG
CCGAAGGCAACGCTGAGGTAGGCACCTACGGCCGCGTCTCGTAAATAGCG
GTGGTAGTTTTTTGTGGTACTCAACTCGCTGTAAAGACTTCAACACATCC
CCTTCGACTGTGGCTATATCTCGAACGGATGGTCTTTCTGTGTTTATATT
TGTTTTTCGGAATGATTTAGTGGTACTACTGTGGATGACGCAAGATACCG
CACCCCCGAGGTACCGTACCGTGTCTCGTAAGCAGTAAATGGTACGGCTG
CAGTGATACCGGTTTATAGTGATGAGTGATAGTGATAGTGATAGTGATAG
TGATAGTGATGAGTGATAGCAGTACAGTCGTGGACCCGGTGTAGCGGTCC
ATGGTGTCACGAAATGTTTTGGCCGCTGTTGCTAGTATTACCTTTGAGGG
CTTCACCACTACACCGGTTTGATTGGCAGTTATGTTATGTTATGTGGTAG
TGTGACTACAGTACCGAGGTGCAGCCGTAGCCATGCCACGATATTTTGGA
ACCGCTATTCAGGGTATCCATCCCGCTGAACAGGCAACCGCTAAAGAGGG
ACCACGTGTGGTATAGTATCGTGGATGCTCAAGAGGGACCACGAGTGGTA
TTGTATGGTGGATGAAGTAGGGTATCACAGCCCCCCAGGCACAGGAATGT
CTCGTAACTTGGGTAGTAGTAATGTAGTATTGGTAGTATAGAGTTACCAT
AGATGACGGAGGATATCACACCCCGGAGGCACAGCAATGTCTCGTAAATA
CGGCAGCAGTGATAGCGGTAGTGGTATCGTGGATGACGCAGGGAACCACA
CACCCCAGGCACAGGAATGTCTCGTAAATTCGGTAGTAGTAATAGCAGTA
TAGAAGTGGTATATACCGTAGTTGACGTAAGGTAGCACACCCCCGGCAAC
GGTTTTTAAAAGCTCGATATATGTCAAAATTAATTATCTTGTATAGTACA
GAACGCGCTTTCCCACTTGACAACAACAACCTGGGAGTTGAGAAGAAATC
CAGACTAAAAAAAAAAAGTCAAAGACTGCCACGTACGGTACGCGACTCGC
GCTTCCTTCTCCTCTCCGCTGGTGTGTGTTGTGCCTTGTGCCGGGGTAAA
CTACGCGCGGGTTAAACGCAGAGGTCGGGCCTGATGACGCGGCTGGGCGA
GGACGCCGCGAGCCTCAGCGGGCAGGAGCTCGGGCAGCGAGAGCTTGCGG
ACGTGGCGAGGCGCAGGATAGCCCGGAGCGGCAAGCCTCCACTCATGACC
GAGGTGCATATGTATGCGACTTTTGTGACGGCTAGTTGTCCTGAATCTTT
ATCTTTTTTACCTCTTTTGGGGTCGTTTGGACGCCTCCCCAGCGTGACAG
AAACTCGGAGGATGTTGGTTGGTTCCGGTTCTAAAGAGCGGCGTGGTACT
GCTGTAGGGTCGGCCTGTCTTGTCCTTTGTGTGTAAATCTGTCTGTCTGT
CTGTCTACCTGCTGGTCAGACCCTATTAATAGATTAATAGTGTCCACTTC
TTTTTCCCGCGCGTTGTCGCTTTCATTGCTGGCCGCATCGGTTTTATGCC
GATACAACAACATGTTTTCGCTTTTGATGCCAGCACGAGCCTGGTCCCAA
ATGGGATACGTTACAATTGTAATGACTCTCGGAGAGGGGTCGCGCCGAAT
GCGCCCCCCCGCCCCCCACCCCCCACCCCAAAATTTTCAGTAGCCTTTGT
TGCCGGACTTGTTGCGTGCTCAACCGCTTTTTTCGCCCTCTTTCAGCTTT
GATGTATCTTCTGCCATAACTCCAACGGTTGTAGCTCCCTATTCTTCTTT
GATTCCTTGCACAGGTGATGAAGTGGCGGGCCCAGGCGCAGTACAGGTCA
GACGCCGTGTACAACAGGGACACCATCTTCGACGAGGAAGTCGCGAACCA
GGTGGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16051:640..2646-

>mRNA_E-fasciculatus_F_contig16051.4143.1 ID=mRNA_E-fasciculatus_F_contig16051.4143.1|Name=mRNA_E-fasciculatus_F_contig16051.4143.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16051:640..2646- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGCCCTTCGTGGAGAACATCGGCCCCTGGTTCCAGACGAGGACGAT
GGCGACGTCGGCGCACGGGGATGTGGGCCACACCAAGGGGTTCCGCGAGG
CCGAAGGCAACGCTGAGGGGGGGCCCTTCGTGGAGAACATCGGCCCCTGG
TTCCAGACGAGGACGATGGCGACGTCGGCGCACGGGGATGTGGGCCACAC
CAAGGGGTTCCGCGAGGCCGAAGGCAACGCTGAGAGGTCGGGCCTGATGA
CGCGGCTGGGCGAGGACGCCGCGAGCCTCAGCGGGCAGGAGCTCGGGCAG
CGAGAGCTTGCGGACGTGGCGAGGCGCAGGATAGCCCGGAGCGGCAAGCC
TCCACTCATGACCGAGAGGTCGGGCCTGATGACGCGGCTGGGCGAGGACG
CCGCGAGCCTCAGCGGGCAGGAGCTCGGGCAGCGAGAGCTTGCGGACGTG
GCGAGGCGCAGGATAGCCCGGAGCGGCAAGCCTCCACTCATGACCGAGGT
GATGAAGTGGCGGGCCCAGGCGCAGTACAGGTCAGACGCCGTGTACAACA
GGGACACCATCTTCGACGAGGAAGTCGCGAACCAGGTGGGTGTGATGAAG
TGGCGGGCCCAGGCGCAGTACAGGTCAGACGCCGTGTACAACAGGGACAC
CATCTTCGACGAGGAAGTCGCGAACCAGGTGGGT
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