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Homology
BLAST of mRNA_E-fasciculatus_F_contig1605.4141.1 vs. uniprot
Match: D8LLF2_ECTSI (Kinetochore protein NDC80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF2_ECTSI) HSP 1 Score: 300 bits (767), Expect = 7.700e-95 Identity = 165/181 (91.16%), Postives = 171/181 (94.48%), Query Frame = 1
Query: 1 VKRKEEAYNKSKYALDKQVAGGKSETEHEERRLESQNGSAERLDRVAAENKASSDVLRVQIEALKERKEMEKRQSENVLQSTLETVLDYKEREEKCLAGLKDRYRQHHGAILHGQSAFEVVLSEGGVLLDDEQPAAGEEEGLGGAEDHLRLQEEEGETQEEGEEGGSHGRISLWPSVPSSS 543
VKRKEEAYNKSKYALDKQVAGGKSETEHEERRLESQNGSAERLDRVAAENKASSDVLRVQIEALKERKEMEKRQSENVLQSTLET LDYKEREEKCLAGLKDRYRQHHGAILHGQ+AF++VLSEGG+LLD EQPA EEGLGGAE HLRLQEE GETQE+GEE HGRI+LWPSVPSSS
Sbjct: 564 VKRKEEAYNKSKYALDKQVAGGKSETEHEERRLESQNGSAERLDRVAAENKASSDVLRVQIEALKERKEMEKRQSENVLQSTLETALDYKEREEKCLAGLKDRYRQHHGAILHGQTAFDLVLSEGGILLDHEQPAEEGEEGLGGAEGHLRLQEE-GETQEDGEEDTLHGRIALWPSVPSSS 743
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 302.8 |
| Seed ortholog evalue | 1.1e-79 |
| Seed eggNOG ortholog | 2880.D8LLF2 |
| Preferred name | NDC80 |
| KEGG ko | ko:K11547 |
| GOs | GO:0000003,GO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000940,GO:0000942,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007127,GO:0007163,GO:0007346,GO:0008104,GO:0008150,GO:0008608,GO:0009987,GO:0010564,GO:0010965,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030010,GO:0030071,GO:0031109,GO:0031262,GO:0031617,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034622,GO:0040001,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045787,GO:0045931,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051276,GO:0051293,GO:0051294,GO:0051303,GO:0051310,GO:0051315,GO:0051316,GO:0051321,GO:0051383,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051726,GO:0051783,GO:0051983,GO:0060341,GO:0061982,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071459,GO:0071840,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090268,GO:0097435,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1902850,GO:1903046,GO:1903047,GO:1903504,GO:1903827,GO:1903829,GO:1905340,GO:1905342,GO:1905818 |
| EggNOG free text desc. | Phage-related minor tail protein |
| EggNOG OGs | COG5185@1,KOG0995@2759 |
| COG Functional cat. | D |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03036 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Putative: similar to kinetochore associated 2 |
| Ec32 ortholog | Ec-27_002420.1 |
| Exons | 4 |
| Model size | 546 |
| Cds size | 546 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1605.4141.1 >prot_E-fasciculatus_F_contig1605.4141.1 ID=prot_E-fasciculatus_F_contig1605.4141.1|Name=mRNA_E-fasciculatus_F_contig1605.4141.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=182bp
VKRKEEAYNKSKYALDKQVAGGKSETEHEERRLESQNGSAERLDRVAAEN
KASSDVLRVQIEALKERKEMEKRQSENVLQSTLETVLDYKEREEKCLAGL
KDRYRQHHGAILHGQSAFEVVLSEGGVLLDDEQPAAGEEEGLGGAEDHLR
LQEEEGETQEEGEEGGSHGRISLWPSVPSSS* back to topmRNA from alignment at E-fasciculatus_F_contig1605:14879..16700+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1605.4141.1 ID=mRNA_E-fasciculatus_F_contig1605.4141.1|Name=mRNA_E-fasciculatus_F_contig1605.4141.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1605:14879..16700+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCAAGCGCAAGGAAGAGGCGTACAACAAGAGCAAGTACGCCCTGGACAA
GCAGGTGGCGGGCGGCAAGAGCGAGACAGAGCACGAGGAGAGGCGCCTGG
AATCGCAGAACGGCTCGGCGGAGAGGCTGGACAGGGTGGCGGCGGAGAAC
AAGGCCAGCTCGGACGTGCTGCGGGTGCAGATCGAGGTGTGAATTTAACG
GTTTGTGTGTTGGTTGGTTGGTTTGGCCGAGAGAGGAAGAGGTGGCATGT
GGAGAGCTTTGTTTCTTAACCTTGGCAAAGCATCAACAAAGTCAAGGCTT
GAATTGAATTTGCGGCATCATCGAGAACCACGTTGTCGTATCAAGACGGG
ACGAAGGTGTGTCACCCAGCATTCGCGGTGCTCTGGAATGACATGAACCT
AATGTGCACGTTCTTGCGATGGCGACCAACCCTTACTAAGCGCTTCGACA
CGAACGTTATGTGCTGTATGGCTCCGTTCTGTACCGACAGGCGCTGAAGG
AGAGGAAGGAGATGGAGAAGAGGCAAAGCGAGAACGTGTTGCAGAGTACG
CTGGAAACTGTCCTGGACTACAAGGTACAGCAGTACAGCAGTCGCAGTAA
CTAGAGATCTTATTGTCAGCTGGTCGGACCGCCAAGTATCGTTGTTGAGG
AAAAATACGATGGGCTTACGTGCTTGGCGTTGCTTGTCGAATTCAGCCTT
ACACACTGCCGATGTTGCGAACAGCAGTGGACGGTACCCTGGGTGTTCGG
CCCGCCGAGGTAGTTTACAACGCGTTCTAGATATTTCCGGAGTCTGTCGC
CGTGGCCTCCCCCGCCCCTCCAGGACGTTGGAATCTGTACGCCTACTGGC
GATTTGACTCTGGGTACGACTGCCCGTTGTAAAAGGACCACTCGCGGCCT
TCCAAATTTTTCCAAACGTACTCTACGGAGACGGGAGTTCTCCTTTCCCG
CAGTTCTTGCCGTTGATAGTGGTTGTTTCGTAGCCCGCTGGAAACAAATT
GGTGTGTTACCGCAGCACTGTCCGATAGTGTTCTCTGAGGATGCTGCTCG
CTCACCGCATCCTGCCTTGGCAATGCGGGGGTGCGTTCAATTCCCCAACC
TCGATTCCAGCTTGCAAGAACGCTTGGTTGTTGCGATGTGTTTTTTTTTG
CCCAGGTGCCAAGTGTTGAATGCTTGCTGCTAGTGCTTTTGGCTTCTGAT
GCTGATACTGATGCCTTTCGCTGCGATGCTTACGTTGTCCGACGGTCGCC
GGCAACTCGTTCGCCCGCACGCGTGCACATGGCCGTGTACAACCGTAAGC
AGGAGCGAGAGGAGAAGTGCTTGGCCGGTCTCAAGGACAGGTATCGTCAG
CACCACGGGGCTATCCTTCACGGCCAGTCGGCGTTCGAGGTCGTGCTGTC
CGAGGGAGGTGTTTTGCTGGACGACGAACAGCCGGCGGCGGGGGAGGAAG
AGGGACTCGGAGGGGCGGTAAGTTCGCACCACCCTTCGCGTGTGTATCCT
ATAGGGGGGGAGCCCGCAGTGCGCATCTTTTGATAATTGGTCGTCGGCCT
GGCAGCCGCTAACGACAATTTAGAAGTAGCTTGGTTTCGTTGATTGGGCG
ACGTTGAGTTAACTTACGGTTCGTTGTTGGGCCGCATGATCTTTATGTTT
TGTGTGACCGGTTCGCTATGCCGTTACGTCGTTTCGTTTCGTCATCGTAC
ATGTGTCGCAGGAGGACCACCTTCGGCTACAGGAGGAGGAAGGGGAGACG
CAGGAGGAGGGCGAGGAGGGCGGCTCGCACGGCCGGATATCCCTGTGGCC
CTCCGTGCCCTCGTCCTCATGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1605:14879..16700+ >mRNA_E-fasciculatus_F_contig1605.4141.1 ID=mRNA_E-fasciculatus_F_contig1605.4141.1|Name=mRNA_E-fasciculatus_F_contig1605.4141.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1605:14879..16700+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCAAGCGCAAGGAAGAGGCGTACAACAAGAGCAAGTACGCCCTGGACAA
GCAGGTGGCGGGCGGCAAGAGCGAGACAGAGCACGAGGAGAGGCGCCTGG
AATCGCAGAACGGCTCGGCGGAGAGGCTGGACAGGGTGGCGGCGGAGAAC
AAGGCCAGCTCGGACGTGCTGCGGGTGCAGATCGAGGTCAAGCGCAAGGA
AGAGGCGTACAACAAGAGCAAGTACGCCCTGGACAAGCAGGTGGCGGGCG
GCAAGAGCGAGACAGAGCACGAGGAGAGGCGCCTGGAATCGCAGAACGGC
TCGGCGGAGAGGCTGGACAGGGTGGCGGCGGAGAACAAGGCCAGCTCGGA
CGTGCTGCGGGTGCAGATCGAGGCGCTGAAGGAGAGGAAGGAGATGGAGA
AGAGGCAAAGCGAGAACGTGTTGCAGAGTACGCTGGAAACTGTCCTGGAC
TACAAGGCGCTGAAGGAGAGGAAGGAGATGGAGAAGAGGCAAAGCGAGAA
CGTGTTGCAGAGTACGCTGGAAACTGTCCTGGACTACAAGGAGCGAGAGG
AGAAGTGCTTGGCCGGTCTCAAGGACAGGTATCGTCAGCACCACGGGGCT
ATCCTTCACGGCCAGTCGGCGTTCGAGGTCGTGCTGTCCGAGGGAGGTGT
TTTGCTGGACGACGAACAGCCGGCGGCGGGGGAGGAAGAGGGACTCGGAG
GGGCGGAGCGAGAGGAGAAGTGCTTGGCCGGTCTCAAGGACAGGTATCGT
CAGCACCACGGGGCTATCCTTCACGGCCAGTCGGCGTTCGAGGTCGTGCT
GTCCGAGGGAGGTGTTTTGCTGGACGACGAACAGCCGGCGGCGGGGGAGG
AAGAGGGACTCGGAGGGGCGGAGGACCACCTTCGGCTACAGGAGGAGGAA
GGGGAGACGCAGGAGGAGGGCGAGGAGGGCGGCTCGCACGGCCGGATATC
CCTGTGGCCCTCCGTGCCCTCGTCCTCATGAGAGGACCACCTTCGGCTAC
AGGAGGAGGAAGGGGAGACGCAGGAGGAGGGCGAGGAGGGCGGCTCGCAC
GGCCGGATATCCCTGTGGCCCTCCGTGCCCTCGTCCTCATGA back to top
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