mRNA_E-fasciculatus_F_contig16034.4135.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16034.4135.1
Unique NamemRNA_E-fasciculatus_F_contig16034.4135.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: D8LEX4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX4_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 2.660e-130
Identity = 192/197 (97.46%), Postives = 194/197 (98.48%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 591
            P   +VVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEA+MKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV
Sbjct:  100 PSSHEVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEARMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 296
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: K0R6K1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6K1_THAOC)

HSP 1 Score: 323 bits (829), Expect = 3.520e-107
Identity = 156/197 (79.19%), Postives = 178/197 (90.36%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 591
            P   +VV+WIKRILRV+KTGHSGTLDPKVTGCLIVC+DRATRLVKAQQSAGKEY+G+ R HSA+D +      K+ +AV  LTGALFQRPPLISAVKRQLRIRTIY+SKLIEYD+ R+LGIFWVSC+AGTYVRTLCVHLGL+VGTGGHMQELRRVRSGV++E+ NLVTMHDV+DAQHV+DT KDE YLRR++MPLEV
Sbjct:  119 PSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQSAGKEYIGVVRLHSAIDDN-----KKLHRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDDQRNLGIFWVSCEAGTYVRTLCVHLGLLVGTGGHMQELRRVRSGVMAEKDNLVTMHDVMDAQHVFDTTKDEKYLRRVVMPLEV 310
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: A0A7S3V9Q7_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9Q7_9STRA)

HSP 1 Score: 323 bits (829), Expect = 6.070e-107
Identity = 155/197 (78.68%), Postives = 176/197 (89.34%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 591
            P   +VV+WIKRILRV+KTGHSGTLDPKVTGCLIVC+DRATRLVKAQQSAGKEY+G+ R HSA+     E   ++ +AV  LTGALFQRPPLISAVKRQLRIRTIY+SKLIE+D DR+LGIFWVSC+AGTY+RTLCVHLGL+VGTGGHMQELRRVRSG+L E+ NLVTMHDVLDAQHVYDT KDE YLRR++MPLE+
Sbjct:   91 PSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQSAGKEYIGVVRLHSAI-----EDTKQLNRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEFDKDRNLGIFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGILGEDNNLVTMHDVLDAQHVYDTTKDEKYLRRVVMPLEI 282
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: A0A7S2KWJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KWJ2_9STRA)

HSP 1 Score: 320 bits (820), Expect = 6.730e-106
Identity = 155/197 (78.68%), Postives = 175/197 (88.83%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 591
            P   +VV+WIKRILRV+KTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEY+G+ R HSA+     E    + +AV  LTGALFQRPPLISAVKRQLRIRTIY+SKLIEYD  R+LGIFWVSC+AGTY+RT+CVHLGL+VGTGGHMQELRRVRSGV++E+ NLVTMHDV+DAQHVYDT KDE YLRR++MPLEV
Sbjct:   92 PSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYIGVVRLHSAI-----EDTKALHRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDEKRNLGIFWVSCEAGTYIRTMCVHLGLLVGTGGHMQELRRVRSGVMAEKDNLVTMHDVMDAQHVYDTTKDEKYLRRVVMPLEV 283
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: B8C572_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C572_THAPS)

HSP 1 Score: 320 bits (820), Expect = 9.400e-106
Identity = 158/196 (80.61%), Postives = 173/196 (88.27%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLE 588
            P   +VV+WIKRILRV+KTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVG+ R HSA+     E   ++ +AV  LTGALFQRPPLISAVKRQLRIRTIY+SKLIEYD  R+LGIFWVSC+AGTYVRTLCVHLGL+VGTGGHMQELRRVRSGVL E  NLVTMHDV+DAQHVYDT KDE YLRR++MPLE
Sbjct:   64 PSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGVVRLHSAL-----EDTKQLHRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDEKRNLGIFWVSCEAGTYVRTLCVHLGLLVGTGGHMQELRRVRSGVLDENDNLVTMHDVMDAQHVYDTTKDEKYLRRVVMPLE 254
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: A0A7S4VRT4_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VRT4_9STRA)

HSP 1 Score: 320 bits (820), Expect = 2.670e-105
Identity = 154/197 (78.17%), Postives = 175/197 (88.83%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 591
            P   +VV+WIKRILR +KTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVG+ R HSA+D + V     + +AV  LTGALFQRPPLISAVKRQLRIRTIY+SKLIEYD+ R+LGIFWVSC+AGTY+RT+CVHLGL+VGTGGHMQELRR RSG++ EE N+VTMHDV+DAQHVYDT KDE YLRR++MPLEV
Sbjct:   97 PSSHEVVSWIKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGVVRLHSAIDDTKV-----LNRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDDKRNLGIFWVSCEAGTYIRTMCVHLGLLVGTGGHMQELRRARSGIMREEDNMVTMHDVMDAQHVYDTTKDEKYLRRVVMPLEV 288
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: A0A2D4CBX7_PYTIN (H/ACA ribonucleoprotein complex subunit 4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBX7_PYTIN)

HSP 1 Score: 320 bits (819), Expect = 3.360e-105
Identity = 155/197 (78.68%), Postives = 174/197 (88.32%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 591
            P   +VVAWI+RILRV+KTGHSGTLDPKVTGCLIVCIDRATRLVKAQQ AGKEYV + R HSA++G A     K+ +A+  LTGALFQRPPLISAVKRQLRIRTIYDSKLIEYD DRHLG+FWVSC+AGTY+RTLCVHLGL++G GGHMQELRRVRSGVL E+ ++VTMHDVLDAQ+ YDT KDESYLRRI+ PLEV
Sbjct:   98 PSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVAVVRLHSAIEGQA-----KLARAIETLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDQDRHLGVFWVSCEAGTYIRTLCVHLGLVLGVGGHMQELRRVRSGVLGEQDSMVTMHDVLDAQYQYDTYKDESYLRRIVRPLEV 289
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: A0A482RXZ4_9ARCH (RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXZ4_9ARCH)

HSP 1 Score: 316 bits (809), Expect = 3.200e-104
Identity = 152/197 (77.16%), Postives = 174/197 (88.32%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 591
            P   +VVAWIKRILRV+KTGHSGTLDPKVTGCLIVC+DRATRLVKAQQSAGKEYVG+ R HSA+     E +  + KA+  LTGALFQRPPLI+AVKRQLRIRTIY+SK+IEYD  RHLG+FWVSC+AGTY+RTLCVHLGL+VGTGGHMQELRRVRSG+LSE  NLVTMHD+LDAQHV D  +DE+YLR+++MPLEV
Sbjct:   64 PSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQSAGKEYVGIVRLHSAI-----ENESALYKALETLTGALFQRPPLIAAVKRQLRIRTIYESKMIEYDAQRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGILSENQNLVTMHDLLDAQHVLDQSRDEAYLRKVVMPLEV 255
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: A0A448Z292_9STRA (Uncharacterized protein n=3 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z292_9STRA)

HSP 1 Score: 315 bits (808), Expect = 1.020e-103
Identity = 154/197 (78.17%), Postives = 174/197 (88.32%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 591
            P   +VV+WIK+ILRV+KTGHSGTLDPKVTGCLIVCIDRATRLVK+QQSAGKEYV +AR HSA D +      KV+++V  LTGALFQRPPLISAVKRQLRIRTIY+SKLI+YD DR+LG+ WVSC+AGTY+RTLCVHLGL+ G GGHMQELRRVRSG LSE  NLVTMHDVLDAQ+VYDT KDESYLRR++MPLEV
Sbjct:   85 PSSHEVVSWIKKILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAVARLHSACDVA------KVQRSVETLTGALFQRPPLISAVKRQLRIRTIYESKLIQYDEDRNLGVLWVSCEAGTYIRTLCVHLGLLTGAGGHMQELRRVRSGALSENDNLVTMHDVLDAQYVYDTTKDESYLRRVVMPLEV 275
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BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Match: W7U954_9STRA (H aca ribonucleoprotein complex subunit 4 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U954_9STRA)

HSP 1 Score: 316 bits (809), Expect = 3.070e-103
Identity = 152/197 (77.16%), Postives = 174/197 (88.32%), Query Frame = 1 
Query:    1 PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV 591
            P   +VVAWIKRILRV+KTGHSGTLDPKVTGCLIVCIDRATRLVKAQQ AGKEYVG+ R H A++G +     K+ +AV  LTGALFQRPPLI+AVKRQLRIRTIY+SKL+EYD  RHLG+FWVSC+AGTY+RTLCVHLGL+VGTGGHMQELRRVRSGVL+E  +L+TMHDVLDAQ+ YDT KDESYLRR ++PLE+
Sbjct:  118 PSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGES-----KLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEI 309
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16034.4135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEX4_ECTSI2.660e-13097.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K0R6K1_THAOC3.520e-10779.19Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3V9Q7_9STRA6.070e-10778.68Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2KWJ2_9STRA6.730e-10678.68Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B8C572_THAPS9.400e-10680.61Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4VRT4_9STRA2.670e-10578.17Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A2D4CBX7_PYTIN3.360e-10578.68H/ACA ribonucleoprotein complex subunit 4 n=1 Tax=... [more]
A0A482RXZ4_9ARCH3.200e-10477.16RNA-guided pseudouridylation complex pseudouridine... [more]
A0A448Z292_9STRA1.020e-10378.17Uncharacterized protein n=3 Tax=Pseudo-nitzschia T... [more]
W7U954_9STRA3.070e-10377.16H aca ribonucleoprotein complex subunit 4 n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16034contigE-fasciculatus_F_contig16034:479..2842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.7
Seed ortholog evalue6.4e-105
Seed eggNOG ortholog2880.D8LEX4
Preferred nameDKC1
KEGG rclassRC00055,RC00523
KEGG koko:K01868,ko:K11131
KEGG ReactionR03663
KEGG Pathwayko00970,ko03008,map00970,map03008
KEGG ModuleM00359,M00360,M00425
GOsGO:0000003,GO:0000154,GO:0000454,GO:0000455,GO:0000495,GO:0000723,GO:0001522,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003720,GO:0003723,GO:0003824,GO:0003964,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006403,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007275,GO:0007276,GO:0007281,GO:0007444,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0009058,GO:0009059,GO:0009451,GO:0009506,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009982,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010638,GO:0010833,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016556,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0016853,GO:0016866,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022412,GO:0022414,GO:0022613,GO:0030054,GO:0030154,GO:0030515,GO:0031118,GO:0031120,GO:0031123,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031429,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033979,GO:0034061,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034964,GO:0035220,GO:0035295,GO:0040031,GO:0042127,GO:0042221,GO:0042254,GO:0042592,GO:0043085,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043489,GO:0043628,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0045934,GO:0045935,GO:0046483,GO:0046689,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0055044,GO:0060249,GO:0060255,GO:0060341,GO:0060429,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070201,GO:0070202,GO:0070203,GO:0071704,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0080090,GO:0090304,GO:0090661,GO:0090666,GO:0090669,GO:0090670,GO:0090685,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902369,GO:1902494,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:1990481,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.mRNA pseudouridine synthesis
EggNOG OGsCOG0130@1,KOG2529@2759
EC6.1.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03009,ko03016,ko03032
Hectar predicted targeting categoryother localisation
Exons3
Model size591
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16034.4135.1prot_E-fasciculatus_F_contig16034.4135.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16034 479..2842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928072.1653113-CDS-E-fasciculatus_F_contig16034:478..6631622928072.1653113-CDS-E-fasciculatus_F_contig16034:478..663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16034 479..663 +
1695995811.7206242-CDS-E-fasciculatus_F_contig16034:478..6631695995811.7206242-CDS-E-fasciculatus_F_contig16034:478..663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16034 479..663 +
1622928072.1768904-CDS-E-fasciculatus_F_contig16034:1485..16581622928072.1768904-CDS-E-fasciculatus_F_contig16034:1485..1658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16034 1486..1658 +
1695995811.7363534-CDS-E-fasciculatus_F_contig16034:1485..16581695995811.7363534-CDS-E-fasciculatus_F_contig16034:1485..1658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16034 1486..1658 +
1622928072.192147-CDS-E-fasciculatus_F_contig16034:2609..28421622928072.192147-CDS-E-fasciculatus_F_contig16034:2609..2842Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16034 2610..2842 +
1695995811.7450492-CDS-E-fasciculatus_F_contig16034:2609..28421695995811.7450492-CDS-E-fasciculatus_F_contig16034:2609..2842Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16034 2610..2842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16034.4135.1

>prot_E-fasciculatus_F_contig16034.4135.1 ID=prot_E-fasciculatus_F_contig16034.4135.1|Name=mRNA_E-fasciculatus_F_contig16034.4135.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=197bp
PRPQQVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSA
GKEYVGLARFHSAVDGSAVEAKMKVEKAVGLLTGALFQRPPLISAVKRQL
RIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQ
ELRRVRSGVLSEEGNLVTMHDVLDAQHVYDTKKDESYLRRIIMPLEV
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mRNA from alignment at E-fasciculatus_F_contig16034:479..2842+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16034.4135.1 ID=mRNA_E-fasciculatus_F_contig16034.4135.1|Name=mRNA_E-fasciculatus_F_contig16034.4135.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2364bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16034:479..2842+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCGGCCACAACAGGTGGTGGCGTGGATCAAGCGCATCCTCCGGGTGGA
CAAGACCGGCCACAGCGGAACGCTCGACCCCAAGGTTACCGGGTGCTTGA
TCGTGTGCATAGACCGAGCCACGAGGCTGGTGAAGGCGCAGCAGAGCGCG
GGGAAGGAGTACGTGGGTCTAGCGAGGTTTCACAGGTGCGGCGGGATCTG
GTAGGTATCTCCGTAGAATCATACTTCCGGAGTGGACTGGCTCATGAAAG
CACAGCAGTGTCATCAAGGTGTGATGCAAGATGAAAATGCAGCAGGGAGG
CAGGACCAACCCACAGCTGGCTGCCAGCTGCTGGTTGTGACGTTTCCATG
TTCACACAGCTGACGTGTTTTTGACTCGAACAGCCAACCTCAACGAACCA
AGAATAACAGTTTGCAAATCTGCAGTCTCACGACGACGGTGTCGGCTTGA
GCGGCATGTTGGCGCGGCAGCTGGAGGGCTCTAGTTACCGGAGTGGGGGT
GGGTGGGAGAGGAACAAAGCAATGCAACAGCGAAGCGGTTTTGGTTAAAA
CGACGGTGTTATGATTTTGGTAACTCACCTGCATCCGATCGAGCTACAGC
TGGAGGACCATAGTTGCGTCCGAAAGCCGTGACGAGTCGGTTGTTCCAAT
CAACCAATCAACGTATTGACTATCGTATCGACCAGTCAAACCCATATCCG
AAAAACGAAATTTCATTGCCAATGTGCTGTAGACCAAGTAATTTGACCAG
CGACGGGGCAATCAAGCCAGCCCATCGATGAATCCAATAGGCAAATCGAG
CAGCCCGCCGATCAACGCACACCGCCATCCGAATCCCGCGACGAGCAGTC
AGTGTTGCATGTCAACACCCACTCTCTGCGTTTCGGCTCGCCGTCCCTCT
CTCTCTCTCTCTTTCAGAAACTCACCGTCTATTTCTCTCTCTCTCCCTCT
GTCTTTCTCTTTCTTTTCCTTTTTCTCTTAATCTTTTTCTCTTCACGGCA
ATGACAGTGCGGTGGACGGGAGCGCGGTAGAGGCGAAGATGAAGGTGGAG
AAAGCGGTGGGGTTGCTGACGGGGGCCCTCTTCCAACGGCCACCTTTGAT
CTCCGCCGTTAAGCGGCAGCTCCGAATCCGAACCATCTACGACAGCAAGC
TCATCGAGTACGACAACGACCGTCATCTAGGTGAGGTGACAACCGAGCAT
GTTTTATTTGGATTTTCGGGACCCCGCAGTAGTAGGTTTGGTTTATGTTG
GTGACCGTCATCTAGGTGACCAGACAACGCGCATTTTTTATTTGGTTTTT
CGGAACCCCGCAGTAGTAGGTTTGGTTTATGTTGCTAACGTATCGTACAC
GTCGGGGGAAGCGTGAGAGAGCAACAGCACGCGGAATGGGGGATGAGATA
CAGAAACACACCGACAACATACTGGTTTAGCATGTTCGTCTACGTGTTTT
GCCCCGCTATCAGACTGGCGCCTTTACATTGGTTACTCTGTTCGCGCGGA
CGATGCTGGCTGCGTCGGGAAGCACACTCATGAATCAGAGCGGGCAGCAG
TAGCAGTACAGTCGACAGTCGAAAGAGGGAAGAAAGGACGAGATGCGTCT
GCTTGTGCTGCTGCTGCTGCTGCTGCTGCGCTTAGCGGTGGCTTAGATGC
CGTACACAACCAGTCCAGTGTGCGCACGGCGACTCTGTCCTGCCCTCGCA
CACACACGCGTGCACACGCCCTGCACGCAACAAATCGCGCGCGCGGTCAC
ACGTAAAGCGCTGTCGAAAGCACAAAACGCAAGAAAGCAAGAAAGCGAGT
AGCACACCGACACCGACACACGTACGCGAAACCAGCAGCGGAAGCGCTAG
TACAGGGGTTGGGGCTGGTGATTGTTTACGATGAAAGAGTCCAACGCTCT
CCCCCCCTCCCCCTCTTGATCACAAAAAAAAAAAGTATACAAGTATTCTC
CTCTGAGCTAACGATGTCTATCCGCCCCTTCTTTGCCTTGCCAGGCTTAA
TCACAAAACAGCAGTCGAATCGAAACATTTTTTTTGTGATTGTTCTTGCA
TCGTCTTCCAGAAGAATTTTTCTCATTGTTTTCTTGGCTTGCTTTTTCTT
TTTTGGGGGGGTTTCTTGCGTCATTTTCCAGGAATTTTCTGGGTGAGCTG
CCAGGCGGGGACCTACGTGCGCACGCTGTGCGTCCACCTGGGCCTGATCG
TCGGCACGGGGGGGCACATGCAGGAGCTCCGGCGGGTGCGGTCGGGGGTT
TTGTCGGAGGAGGGTAACCTGGTGACAATGCACGACGTGCTGGACGCGCA
GCACGTGTACGACACCAAGAAGGACGAGTCTTACCTCAGGAGGATCATCA
TGCCGCTCGAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16034:479..2842+

>mRNA_E-fasciculatus_F_contig16034.4135.1 ID=mRNA_E-fasciculatus_F_contig16034.4135.1|Name=mRNA_E-fasciculatus_F_contig16034.4135.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1182bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16034:479..2842+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCGGCCACAACAGGTGGTGGCGTGGATCAAGCGCATCCTCCGGGTGGA
CAAGACCGGCCACAGCGGAACGCTCGACCCCAAGGTTACCGGGTGCTTGA
TCGTGTGCATAGACCGAGCCACGAGGCTGGTGAAGGCGCAGCAGAGCGCG
GGGAAGGAGTACGTGGGTCTAGCGAGGTTTCACAGCCGCGGCCACAACAG
GTGGTGGCGTGGATCAAGCGCATCCTCCGGGTGGACAAGACCGGCCACAG
CGGAACGCTCGACCCCAAGGTTACCGGGTGCTTGATCGTGTGCATAGACC
GAGCCACGAGGCTGGTGAAGGCGCAGCAGAGCGCGGGGAAGGAGTACGTG
GGTCTAGCGAGGTTTCACAGTGCGGTGGACGGGAGCGCGGTAGAGGCGAA
GATGAAGGTGGAGAAAGCGGTGGGGTTGCTGACGGGGGCCCTCTTCCAAC
GGCCACCTTTGATCTCCGCCGTTAAGCGGCAGCTCCGAATCCGAACCATC
TACGACAGCAAGCTCATCGAGTACGACAACGACCGTCATCTAGTGCGGTG
GACGGGAGCGCGGTAGAGGCGAAGATGAAGGTGGAGAAAGCGGTGGGGTT
GCTGACGGGGGCCCTCTTCCAACGGCCACCTTTGATCTCCGCCGTTAAGC
GGCAGCTCCGAATCCGAACCATCTACGACAGCAAGCTCATCGAGTACGAC
AACGACCGTCATCTAGGAATTTTCTGGGTGAGCTGCCAGGCGGGGACCTA
CGTGCGCACGCTGTGCGTCCACCTGGGCCTGATCGTCGGCACGGGGGGGC
ACATGCAGGAGCTCCGGCGGGTGCGGTCGGGGGTTTTGTCGGAGGAGGGT
AACCTGGTGACAATGCACGACGTGCTGGACGCGCAGCACGTGTACGACAC
CAAGAAGGACGAGTCTTACCTCAGGAGGATCATCATGCCGCTCGAGGTGG
AATTTTCTGGGTGAGCTGCCAGGCGGGGACCTACGTGCGCACGCTGTGCG
TCCACCTGGGCCTGATCGTCGGCACGGGGGGGCACATGCAGGAGCTCCGG
CGGGTGCGGTCGGGGGTTTTGTCGGAGGAGGGTAACCTGGTGACAATGCA
CGACGTGCTGGACGCGCAGCACGTGTACGACACCAAGAAGGACGAGTCTT
ACCTCAGGAGGATCATCATGCCGCTCGAGGTG
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