mRNA_E-fasciculatus_F_contig16033.4134.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16033.4134.1
Unique NamemRNA_E-fasciculatus_F_contig16033.4134.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: A0A6H5L474_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L474_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.990e-20
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV
Sbjct:   42 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 86
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: A0A485B0R5_RAOPL (Heat shock protein J n=2 Tax=Bacteria TaxID=2 RepID=A0A485B0R5_RAOPL)

HSP 1 Score: 65.1 bits (157), Expect = 5.890e-13
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSKTA E+EI  AYK+LAMKYHPDR +GD EA  KFKEI  AY +
Sbjct:   12 VSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEI 56
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: A0A379V179_SALET (DnaJ protein n=1 Tax=Salmonella enterica I TaxID=59201 RepID=A0A379V179_SALET)

HSP 1 Score: 65.5 bits (158), Expect = 6.150e-13
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSKTA E+EI  AYK+LAMKYHPDR +GD EA  KFKEI  AY V
Sbjct:   12 VSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEV 56
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: A0A485DUW0_ECOLX (Chaperone protein DnaJ n=1 Tax=Escherichia coli TaxID=562 RepID=A0A485DUW0_ECOLX)

HSP 1 Score: 65.5 bits (158), Expect = 6.150e-13
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSKTA E+EI  AYK+LAMKYHPDR +GD EA  KFKEI  AY V
Sbjct:   12 VSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEV 56
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: UPI001ABFFDCA (DnaJ domain-containing protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001ABFFDCA)

HSP 1 Score: 65.5 bits (158), Expect = 7.330e-13
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSKTA E+EI  AYK+LAMKYHPDR +GD EA  KFKEI  AY V
Sbjct:   12 VSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEV 56
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: A0A336N2P0_AGGAP (Heat shock protein J n=1 Tax=Aggregatibacter aphrophilus TaxID=732 RepID=A0A336N2P0_AGGAP)

HSP 1 Score: 66.6 bits (161), Expect = 8.070e-13
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSK A EKEI  AYKKLAM+YHPDRT+GD E  EKFKEI  AY +
Sbjct:   12 VSKNADEKEIKRAYKKLAMQYHPDRTKGDKEKEEKFKEIQEAYEI 56
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: UPI000F25396A (DnaJ domain-containing protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI000F25396A)

HSP 1 Score: 65.1 bits (157), Expect = 8.510e-13
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSKTA E+EI  AYK+LAMKYHPDR +GD EA  KFKEI  AY +
Sbjct:   12 VSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEI 56
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: UPI001135A308 (DnaJ domain-containing protein n=3 Tax=Enterobacteriaceae TaxID=543 RepID=UPI001135A308)

HSP 1 Score: 65.5 bits (158), Expect = 8.970e-13
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSKTA E+EI  AYK+LAMKYHPDR +GD EA  KFKEI  AY V
Sbjct:   12 VSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEV 56
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: A0A7C4ML78_9DELT (J domain-containing protein n=1 Tax=Desulfatirhabdium butyrativorans TaxID=340467 RepID=A0A7C4ML78_9DELT)

HSP 1 Score: 69.3 bits (168), Expect = 1.020e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSKTATE EI  AY+KLAMKYHPD+T+GD  A EKFK+I+ AYAV
Sbjct:   12 VSKTATEDEIKKAYRKLAMKYHPDKTKGDKAAEEKFKQISEAYAV 56
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BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Match: A0A376W0F7_ECOLX (Chaperone protein DnaJ n=3 Tax=Enterobacteriaceae TaxID=543 RepID=A0A376W0F7_ECOLX)

HSP 1 Score: 65.5 bits (158), Expect = 1.040e-12
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAV 135
            VSKTA E+EI  AYK+LAMKYHPDR +GD EA  KFKEI  AY V
Sbjct:   12 VSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEV 56
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16033.4134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L474_9PHAE2.990e-20100.00J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A485B0R5_RAOPL5.890e-1368.89Heat shock protein J n=2 Tax=Bacteria TaxID=2 RepI... [more]
A0A379V179_SALET6.150e-1371.11DnaJ protein n=1 Tax=Salmonella enterica I TaxID=5... [more]
A0A485DUW0_ECOLX6.150e-1371.11Chaperone protein DnaJ n=1 Tax=Escherichia coli Ta... [more]
UPI001ABFFDCA7.330e-1371.11DnaJ domain-containing protein n=1 Tax=Escherichia... [more]
A0A336N2P0_AGGAP8.070e-1371.11Heat shock protein J n=1 Tax=Aggregatibacter aphro... [more]
UPI000F25396A8.510e-1368.89DnaJ domain-containing protein n=1 Tax=Klebsiella ... [more]
UPI001135A3088.970e-1371.11DnaJ domain-containing protein n=3 Tax=Enterobacte... [more]
A0A7C4ML78_9DELT1.020e-1273.33J domain-containing protein n=1 Tax=Desulfatirhabd... [more]
A0A376W0F7_ECOLX1.040e-1271.11Chaperone protein DnaJ n=3 Tax=Enterobacteriaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16033contigE-fasciculatus_F_contig16033:172..315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D8LLG4
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005515,GO:0008092,GO:0008150,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009719,GO:0009725,GO:0009737,GO:0009958,GO:0010033,GO:0033993,GO:0042221,GO:0050896,GO:0097305,GO:1901700
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0713@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928072.1242762-CDS-E-fasciculatus_F_contig16033:171..3151622928072.1242762-CDS-E-fasciculatus_F_contig16033:171..315Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16033 172..315 +
1695995811.7069166-CDS-E-fasciculatus_F_contig16033:171..3151695995811.7069166-CDS-E-fasciculatus_F_contig16033:171..315Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16033 172..315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16033.4134.1prot_E-fasciculatus_F_contig16033.4134.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16033 172..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16033.4134.1

>prot_E-fasciculatus_F_contig16033.4134.1 ID=prot_E-fasciculatus_F_contig16033.4134.1|Name=mRNA_E-fasciculatus_F_contig16033.4134.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=48bp
VSKTATEKEINTAYKKLAMKYHPDRTRGDLEAAEKFKEIATAYAVRA*
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mRNA from alignment at E-fasciculatus_F_contig16033:172..315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16033.4134.1 ID=mRNA_E-fasciculatus_F_contig16033.4134.1|Name=mRNA_E-fasciculatus_F_contig16033.4134.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=144bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16033:172..315+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTCGAAAACTGCAACGGAGAAGGAGATCAACACGGCCTACAAGAAGCT
GGCGATGAAGTACCACCCCGACCGCACCCGCGGGGACCTGGAGGCCGCGG
AAAAGTTCAAGGAGATCGCCACCGCCTACGCGGTACGTGCATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16033:172..315+

>mRNA_E-fasciculatus_F_contig16033.4134.1 ID=mRNA_E-fasciculatus_F_contig16033.4134.1|Name=mRNA_E-fasciculatus_F_contig16033.4134.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16033:172..315+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTCGAAAACTGCAACGGAGAAGGAGATCAACACGGCCTACAAGAAGCT
GGCGATGAAGTACCACCCCGACCGCACCCGCGGGGACCTGGAGGCCGCGG
AAAAGTTCAAGGAGATCGCCACCGCCTACGCGGTACGTGCATAGGTGTCG
AAAACTGCAACGGAGAAGGAGATCAACACGGCCTACAAGAAGCTGGCGAT
GAAGTACCACCCCGACCGCACCCGCGGGGACCTGGAGGCCGCGGAAAAGT
TCAAGGAGATCGCCACCGCCTACGCGGTACGTGCATAG
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