mRNA_E-fasciculatus_F_contig1603.4132.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1603.4132.1
Unique NamemRNA_E-fasciculatus_F_contig1603.4132.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1603.4132.1 vs. uniprot
Match: D8LC39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC39_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.980e-19
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 TQKTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 153
            T KTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW
Sbjct:  229 TVKTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 279
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1603.4132.1 vs. uniprot
Match: A0A6H5JA78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA78_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.740e-18
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 TQKTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 153
            T KTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW
Sbjct:  436 TVKTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 486
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1603.4132.1 vs. uniprot
Match: A0A836C7Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Q5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.330e-9
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   31 QKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 153
            QKRKHQIN LA QAA+ E D+ME+ GA  LTKAQTHAKYGW
Sbjct:   70 QKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 110
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1603.4132.1 vs. uniprot
Match: A0A7S2WVM7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVM7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.840e-8
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 TQKTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 153
            T  TL+P   Q+RKHQIN LA +AA  E +LME+ G S  TKAQT AKYGW
Sbjct:   68 TDMTLKPNKTQRRKHQINSLAFEAAERELELMEKKGNSMKTKAQTQAKYGW 118
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1603.4132.1 vs. uniprot
Match: A0A6V1QUF6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QUF6_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 4.440e-7
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   10 TLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 153
            T +P+ +QKRKHQINQLA  AA  E +L++R G   LTKAQT AKYGW
Sbjct:  149 TDKPSKLQKRKHQINQLAFNAAERELELLDRRGQGMLTKAQTQAKYGW 196
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1603.4132.1 vs. uniprot
Match: A0A812U526_SYMPI (RIK protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812U526_SYMPI)

HSP 1 Score: 55.5 bits (132), Expect = 5.530e-5
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   19 PTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 153
            P+ +QKRKHQIN LA +A   E D++ER     L+KAQTHAKYGW
Sbjct:  237 PSKVQKRKHQINWLANEALENEADMLERGQQRILSKAQTHAKYGW 281
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1603.4132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LC39_ECTSI2.980e-1998.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA78_9PHAE2.740e-1898.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7Q5_9STRA6.330e-975.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WVM7_9STRA6.840e-860.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1QUF6_HETAK4.440e-762.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812U526_SYMPI5.530e-560.00RIK protein n=1 Tax=Symbiodinium pilosum TaxID=295... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1603contigE-fasciculatus_F_contig1603:152..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size1190
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1603.4132.1prot_E-fasciculatus_F_contig1603.4132.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1603 179..307 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928071.9392788-UTR-E-fasciculatus_F_contig1603:151..1781622928071.9392788-UTR-E-fasciculatus_F_contig1603:151..178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1603 152..178 +
1695995811.5934658-UTR-E-fasciculatus_F_contig1603:151..1781695995811.5934658-UTR-E-fasciculatus_F_contig1603:151..178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1603 152..178 +
1622928071.9715843-UTR-E-fasciculatus_F_contig1603:307..13411622928071.9715843-UTR-E-fasciculatus_F_contig1603:307..1341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1603 308..1341 +
1695995811.6205657-UTR-E-fasciculatus_F_contig1603:307..13411695995811.6205657-UTR-E-fasciculatus_F_contig1603:307..1341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1603 308..1341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928071.95962-CDS-E-fasciculatus_F_contig1603:178..3071622928071.95962-CDS-E-fasciculatus_F_contig1603:178..307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1603 179..307 +
1695995811.6108568-CDS-E-fasciculatus_F_contig1603:178..3071695995811.6108568-CDS-E-fasciculatus_F_contig1603:178..307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1603 179..307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1603.4132.1

>prot_E-fasciculatus_F_contig1603.4132.1 ID=prot_E-fasciculatus_F_contig1603.4132.1|Name=mRNA_E-fasciculatus_F_contig1603.4132.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=43bp
MQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW*
back to top

mRNA from alignment at E-fasciculatus_F_contig1603:152..1341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1603.4132.1 ID=mRNA_E-fasciculatus_F_contig1603.4132.1|Name=mRNA_E-fasciculatus_F_contig1603.4132.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1190bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1603:152..1341+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCCAGAAAACTCTGGAGCCGACGTCGATGCAGAAACGCAAGCACCAGAT
CAACCAGCTGGCGGCGCAGGCGGCCAGCATGGAGCGCGATTTGATGGAGC
GTAGCGGCGCGTCGAGATTAACAAAGGCGCAGACCCACGCCAAGTACGGC
TGGTAGTCCCTCCTGAGGTGCGTTGCGCGCGATCGTGAACGGCCCTGCCT
GGCTTGTCTGGTACGGGTGGGCGGTGGCCTACTGGGCCAACAACCGAACG
ATGCGACTGCCTTCTGAATTTGGCTCCTGCTCGTGTTGATTGAGTGTTGG
GGCTTTCGTCGAAACATGATCGATGAGGAAGCAACTCACCACGTGACGGA
GAGGTTTATTAAAGTACGTGATTTGTTGCATGTTTAGGTCGGTGCTCTCC
TTGGCCTCTTGCCCGGCTGCTCTGTGTTTTCCTAGCCGGACGGCCCCAGT
AGCTCTGTCAGGACTAGTCACTTCTAAACACGGTAATTTTATCCGAGGTG
CCTTGCTTTGTGGCAGGTGTTTAGGGTGTATGTACCCCACAGATGTCCTT
CAAAGTCTCAGGTAGTTTGCAACGTGCAGGCCAAGTTAAGCGAGCTAGAG
TCATCCTTGTTCTTATCGTAGACCCGGGCCGCGGCAGGGTGCGTGTATCA
CATGAACTGCGCGTTCAATACATCCCACCTAGCCTCTCTGGGCGTGAGTA
ATATTTTATAACGCATATGCATACCACAAGAAGACCCCTACATGTTAGCG
CACGGCGTGTTTGTGCGTGCTAGAGGCGCGAGAGGCGGTGCGGCCAATCC
ACGCGTTTCATGTTTTGTGAGAGTCTTTTTCCTGAAAGCTTCACATGCAT
CGCAATCGTCAGACTGCACGTACCAAACTGGCTCAGCCAGTGCTGTACAA
CGCCGCCAAGTGTCTGCATACTCCTGTGGATTTCGGGTGCGGCTTGTGGT
GGTGCTTGTGTTTCTCTGTGTGATACAGCGGTATGGCGTGTGTCAATACG
CGCCCACACACCGGTCTTTTCGCTGCTGGTCGGTCAGCGAACGCGGCCGA
TGCCTGTGAAAGAAGCACGCACACAGCGCGCGCAGATTTGTTTTGGGTCA
CGGTGTTACTCGTGCCGTATGTAGTTGTGTTCCATCATGAGACTGGTGTT
CTGTGGGTCATTGTCAACCCAACTCTTCCCCGCTTCCCCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1603:152..1341+

>mRNA_E-fasciculatus_F_contig1603.4132.1 ID=mRNA_E-fasciculatus_F_contig1603.4132.1|Name=mRNA_E-fasciculatus_F_contig1603.4132.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=258bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1603:152..1341+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGAAACGCAAGCACCAGATCAACCAGCTGGCGGCGCAGGCGGCCAG
CATGGAGCGCGATTTGATGGAGCGTAGCGGCGCGTCGAGATTAACAAAGG
CGCAGACCCACGCCAAGTACGGCTGGTAGATGCAGAAACGCAAGCACCAG
ATCAACCAGCTGGCGGCGCAGGCGGCCAGCATGGAGCGCGATTTGATGGA
GCGTAGCGGCGCGTCGAGATTAACAAAGGCGCAGACCCACGCCAAGTACG
GCTGGTAG
back to top