mRNA_E-fasciculatus_F_contig16028.4130.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16028.4130.1
Unique NamemRNA_E-fasciculatus_F_contig16028.4130.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16028.4130.1 vs. uniprot
Match: D7FJX3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX3_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 3.540e-59
Identity = 181/262 (69.08%), Postives = 189/262 (72.14%), Query Frame = 1 
Query:    1 YDRVLFRAAPGLRDSIPAQEALPTWAQLARFAAAFEPPKPGAAAPLGSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPVQPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIIDAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAWLEVGKGGAKAVVNTPDPRKK------------------------LDXXXXXXXXASPQNNIWTETVSAGRGXXXXXSTWGSGTGGFDSSNG 714
            + +VLFRAAPGLRDS+PA+EALPTWAQLARFAAAFEPPKPGAAAPL +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AEPV PDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEI+DAK                  XXXXXXXXXXX          +DAWLEVGKGGAKAVVN PDPRKK                        L+         SPQNNIWTETVS G  XXXXX  WGSGTGGFDSSNG
Sbjct:  308 FVQVLFRAAPGLRDSVPAREALPTWAQLARFAAAFEPPKPGAAAPL-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDAKKNNPKPASDGGSGGVSADXXXXXXXXXXXGEGEE-----DDAWLEVGKGGAKAVVNAPDPRKKVTGLFYRMFRSEVKKNGNPQSSVTLELDLDLPSSTSPQNNIWTETVS-GXXXXXXXXAWGSGTGGFDSSNG 562
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BLAST of mRNA_E-fasciculatus_F_contig16028.4130.1 vs. uniprot
Match: A0A6H5JV52_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV52_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 7.400e-58
Identity = 169/278 (60.79%), Postives = 176/278 (63.31%), Query Frame = 1 
Query:    1 YDRVLFRAAPGLRDSIPAQEALPTWAQLARFAAAFEPPKPGAAAPLGSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPVQPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIIDAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAWLEVGKGGAKAVVNTPDPRKK------------------------------------LDXXXXXXXXASPQNNIWTETVSAG--RGXXXXXSTWGSGTGGFDSSNGGG 720
            + +VLFRAAPGLRDSIPA+EALPTWAQLARFAAAFEPPKPG AAPLGSG               XXXXXXXXXXXXXXX AAEPV PDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEI+DAK                     XXXXXXXXXXXX      +DAWLEVGKGGAKAVVN PDPRKK                                    L          SP+NNIW ET + G    XXXXX  WGSGTGGFDSSNGGG
Sbjct:  275 FVQVLFRAAPGLRDSIPAKEALPTWAQLARFAAAFEPPKPGDAAPLGSGGSSSAKGAWSTAGGRXXXXXXXXXXXXXXX-AAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDAKKNKPKPASDGGDRGGSADSGTXXXXXXXXXXXXE-----DDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLDLPSSPSPRNNIWPETFTGGGXXXXXXXXXAWGSGTGGFDSSNGGG 546
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BLAST of mRNA_E-fasciculatus_F_contig16028.4130.1 vs. uniprot
Match: W7TN80_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN80_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.700e-7
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  250 PVQPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIIDA 381
            P++PD+ +  AF AFR++  GEQEDAQEFLAF LD+LHEE + A
Sbjct:  284 PLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 327
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BLAST of mRNA_E-fasciculatus_F_contig16028.4130.1 vs. uniprot
Match: A0A4D9D9D9_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9D9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.180e-6
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  250 PVQPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIIDA 381
            P++PD+ +  AF AFR++  GEQEDAQEFLAF LD+LHEE + A
Sbjct:  378 PLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 421
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BLAST of mRNA_E-fasciculatus_F_contig16028.4130.1 vs. uniprot
Match: A0A836CGA5_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.080e-5
Identity = 33/104 (31.73%), Postives = 45/104 (43.27%), Query Frame = 1 
Query:  241 AAEPVQPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIIDAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAWLEVGKGGAKAVVN 552
            A + V P + + +  G+FR A  GEQEDA+EFLA+FL +LH+E+                                           +D W EVG+GG  AVVN
Sbjct:  189 AGKAVNPQDTLRQVLGSFRGAVAGEQEDAEEFLAYFLGKLHDEV---------------------ERLVKKQAKDAEQHAVLQQAAVDDEWQEVGRGGVAAVVN 271
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16028.4130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJX3_ECTSI3.540e-5969.08USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JV52_9PHAE7.400e-5860.79USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
W7TN80_9STRA8.700e-761.36USP domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A4D9D9D9_9STRA1.180e-661.36USP domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A836CGA5_9STRA5.080e-531.73USP domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16028contigE-fasciculatus_F_contig16028:172..2540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue1.6e-52
Seed eggNOG ortholog2880.D7FJX3
Preferred nameUBP24
KEGG koko:K11841
KEGG Pathwayko04139,map04139
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016579,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0070646,GO:0070647,GO:0071704,GO:1901564
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1871@1,KOG1871@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-10_000790.1
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size729
Cds size729
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16028.4130.1prot_E-fasciculatus_F_contig16028.4130.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16028 172..2540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928071.8190465-CDS-E-fasciculatus_F_contig16028:171..3271622928071.8190465-CDS-E-fasciculatus_F_contig16028:171..327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16028 172..327 -
1695995811.5448446-CDS-E-fasciculatus_F_contig16028:171..3271695995811.5448446-CDS-E-fasciculatus_F_contig16028:171..327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16028 172..327 -
1622928071.8323445-CDS-E-fasciculatus_F_contig16028:1508..18141622928071.8323445-CDS-E-fasciculatus_F_contig16028:1508..1814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16028 1509..1814 -
1695995811.5582025-CDS-E-fasciculatus_F_contig16028:1508..18141695995811.5582025-CDS-E-fasciculatus_F_contig16028:1508..1814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16028 1509..1814 -
1622928071.8461552-CDS-E-fasciculatus_F_contig16028:2273..25401622928071.8461552-CDS-E-fasciculatus_F_contig16028:2273..2540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16028 2274..2540 -
1695995811.5681756-CDS-E-fasciculatus_F_contig16028:2273..25401695995811.5681756-CDS-E-fasciculatus_F_contig16028:2273..2540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16028 2274..2540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16028.4130.1

>prot_E-fasciculatus_F_contig16028.4130.1 ID=prot_E-fasciculatus_F_contig16028.4130.1|Name=mRNA_E-fasciculatus_F_contig16028.4130.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=243bp
YDRVLFRAAPGLRDSIPAQEALPTWAQLARFAAAFEPPKPGAAAPLGSGS
SSSSAKGAWSTAGGRNRGGGGGRYHRASSAAAEPVQPDEAMSRAFGAFRA
ASLGEQEDAQEFLAFFLDQLHEEIIDAKKKKRPKPAAASDGGGGSADSGT
GGGGGGQVGEQQGGGGEEDAWLEVGKGGAKAVVNTPDPRKKLDLDLDLPS
PASPQNNIWTETVSAGRGGGGGGSTWGSGTGGFDSSNGGGTTG
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mRNA from alignment at E-fasciculatus_F_contig16028:172..2540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16028.4130.1 ID=mRNA_E-fasciculatus_F_contig16028.4130.1|Name=mRNA_E-fasciculatus_F_contig16028.4130.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2369bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16028:172..2540- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGACAGGGTACTGTTTCGAGCGGCCCCGGGGCTGCGAGATTCCATCCC
CGCCCAGGAGGCGTTGCCGACATGGGCGCAGCTAGCGCGATTTGCGGCCG
CGTTCGAACCACCCAAGCCTGGAGCCGCCGCACCCCTCGGCAGCGGTAGC
AGCAGCAGTAGTGCTAAGGGGGCTTGGTCTACCGCGGGTGGTAGAAATAG
GGGCGGCGGTGGCGGGCGCTACCACCGGGCAAGTTCGGCGGCGGCGGAGC
CTGTGCAGCCGGACGAGGTGTGTTTGCGACTCATCGCGTACGTTGCGAAA
GCTTACATTGATAATACACCGCCGCGGTGGGATGGTTGGTCGATAACTTT
TTGGCATTCGTTTGGCAACACGCTACATGCTACTGTGCGAGGCTTCCTTG
GAGAATGGATCAAGTACATCATCCTACGTGTAGCATGTAGCGTGTTGCCA
AACGGGTGTCAAGAAGTTATCAATCAATGTTCTCGAGTTCTTTTTGCAAG
CAATATCCTTAGGCCATCTGCTTGAACTCAGTCTGTAGATGATTTGGGAT
CTTTTGATATGTCACGAGCCTTGCCAACAACCACACTACTACATGAAAGT
GCCAGCATTCACGAAACATAAGGCCGAAAAATGCCGGCAGAAGCATCAAA
TTGCCTCTCGACTACAACAATCCAGCATCCATTGCCGTGCGCGATCTGAT
TCCCCGCGCGAACGAACCACCCGCAGGCCATGTCAAGAGCCTTCGGGGCT
TTCCGGGCAGCCAGCCTGGGGGAGCAGGAGGACGCGCAGGAGTTCCTCGC
CTTCTTCCTGGACCAGCTGCACGAAGAGATCATAGACGCGAAAAAGAAGA
AGAGACCGAAGCCCGCTGCTGCTTCCGACGGGGGTGGGGGGTCCGCAGAT
TCTGGGACAGGCGGGGGGGGTGGTGGGCAGGTTGGAGAGCAGCAGGGGGG
AGGAGGAGAAGAAGACGCCTGGCTGGAGGTTGGGAAAGGAGGAGCCAAGG
CTGTGGTGAACACGCCGGACCCGCGGAAGAAGGTTTCCAATTCATCCGTG
GTGCGTTAGCGTTATTCTTTATTTTGTGTTTTTTTGGGTCGGTTGTGTGG
CCCTGGAGGTTGTAGTTGTACGAAAAATGCAAGGAAAAGTGTAGTATTTA
CACGTCTCACGACGGAAAAAGGGGGGACTGTCGCCATTATAACGGACGAA
AACACACACACACGGTTGGCCGTCTGTATATATACTTCAGAAGAAAGAGC
ATTTTCTAGACTGCCGCTACTATGTTGGGCGGCTGCTGCTGTCCTTCCGT
GTCTTCACGTGCCCTGTGGCTCCCACGCGTTACTCAGCTTGTTTCAACCG
CTGCGCGCTCTCGTGCACGAAATGGCAACGAAGGCTAAAGTTTCTGACAG
CCATGACCCCAGGTTTTCCGACAGAAATGAAGGCAAAATTTAATTCGACC
GACTATAGTAAACCCCATATTTGTTCGTTCTGCCGGACGACTAAACTGTC
CAGTCGGTTGTCCGTCCATATATATACATGGAGAGAGAACACCCGCGACG
ATTGTTAAAGATCCTGGCAGTTATGAATTCCTGCGTCAGAGTTATGTAAG
GTGTATCGGAACTTGACCATGAGGACAGATGCTCAGTCAATCCTACACTA
CAATAGCGCCTACAACATCGATGTTGGGTGAGTTACCCCAGAGCAGAGAA
AGTCAGGAACGAGCCTCGGTCAAAAGGAGGAACTTTCGAACGTGCGGGCG
AGTTTTGTACATACCCTCTTAGAGCTTTCATCCCCACCTGCATGCCCCCT
CCTCTTTTGCTTTTCTGCGACAGGTGACGGGACTGTTCTACGGAATGTTC
CGGTCGGAGGTGAAGAAGAGCGGCAACGCCAAGTCCTCCGTCACTCTTGA
GGCCTTCCATTGCTTGCAGGTAATTCTGCAACAGGCATAGCATTGGCTGT
ACCGTCTACCCACAGTGCAGCACCACACAAGATACGAAACGAAAACAACC
CTGGAGTAGGCAGGTACTCGGCAGGCGGTTCCTTGTATTTTTTGCTGTCG
GTTTCAGGTTATTACACTGGAAATAGAGTGGAAGAAAAGTTAGTATATCC
AAAATCGCGAAAGAAATCGCCTACCGAGTGTAAGCCTTCCCTAGACCGAT
TTTCACAGCTCGATCACAAACCCGTTTCCGTGCCCTCCCTCTCCCTTGGA
AAACGCGAAACAGTTGGATCTAGATCTAGACCTGCCATCACCGGCATCAC
CTCAGAACAACATTTGGACCGAGACCGTTTCAGCGGGAAGAGGAGGAGGG
GGAGGGGGCTCCACGTGGGGATCGGGGACCGGGGGTTTTGACTCATCAAA
CGGCGGAGGTACGACCGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16028:172..2540-

>mRNA_E-fasciculatus_F_contig16028.4130.1 ID=mRNA_E-fasciculatus_F_contig16028.4130.1|Name=mRNA_E-fasciculatus_F_contig16028.4130.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16028:172..2540- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGACAGGGTACTGTTTCGAGCGGCCCCGGGGCTGCGAGATTCCATCCC
CGCCCAGGAGGCGTTGCCGACATGGGCGCAGCTAGCGCGATTTGCGGCCG
CGTTCGAACCACCCAAGCCTGGAGCCGCCGCACCCCTCGGCAGCGGTAGC
AGCAGCAGTAGTGCTAAGGGGGCTTGGTCTACCGCGGGTGGTAGAAATAG
GGGCGGCGGTGGCGGGCGCTACCACCGGGCAAGTTCGGCGGCGGCGGAGC
CTGTGCAGCCGGACGAGTACGACAGGGTACTGTTTCGAGCGGCCCCGGGG
CTGCGAGATTCCATCCCCGCCCAGGAGGCGTTGCCGACATGGGCGCAGCT
AGCGCGATTTGCGGCCGCGTTCGAACCACCCAAGCCTGGAGCCGCCGCAC
CCCTCGGCAGCGGTAGCAGCAGCAGTAGTGCTAAGGGGGCTTGGTCTACC
GCGGGTGGTAGAAATAGGGGCGGCGGTGGCGGGCGCTACCACCGGGCAAG
TTCGGCGGCGGCGGAGCCTGTGCAGCCGGACGAGGCCATGTCAAGAGCCT
TCGGGGCTTTCCGGGCAGCCAGCCTGGGGGAGCAGGAGGACGCGCAGGAG
TTCCTCGCCTTCTTCCTGGACCAGCTGCACGAAGAGATCATAGACGCGAA
AAAGAAGAAGAGACCGAAGCCCGCTGCTGCTTCCGACGGGGGTGGGGGGT
CCGCAGATTCTGGGACAGGCGGGGGGGGTGGTGGGCAGGTTGGAGAGCAG
CAGGGGGGAGGAGGAGAAGAAGACGCCTGGCTGGAGGTTGGGAAAGGAGG
AGCCAAGGCTGTGGTGAACACGCCGGACCCGCGGAAGAAGGCCATGTCAA
GAGCCTTCGGGGCTTTCCGGGCAGCCAGCCTGGGGGAGCAGGAGGACGCG
CAGGAGTTCCTCGCCTTCTTCCTGGACCAGCTGCACGAAGAGATCATAGA
CGCGAAAAAGAAGAAGAGACCGAAGCCCGCTGCTGCTTCCGACGGGGGTG
GGGGGTCCGCAGATTCTGGGACAGGCGGGGGGGGTGGTGGGCAGGTTGGA
GAGCAGCAGGGGGGAGGAGGAGAAGAAGACGCCTGGCTGGAGGTTGGGAA
AGGAGGAGCCAAGGCTGTGGTGAACACGCCGGACCCGCGGAAGAAGTTGG
ATCTAGATCTAGACCTGCCATCACCGGCATCACCTCAGAACAACATTTGG
ACCGAGACCGTTTCAGCGGGAAGAGGAGGAGGGGGAGGGGGCTCCACGTG
GGGATCGGGGACCGGGGGTTTTGACTCATCAAACGGCGGAGGTACGACCG
GCTTGGATCTAGATCTAGACCTGCCATCACCGGCATCACCTCAGAACAAC
ATTTGGACCGAGACCGTTTCAGCGGGAAGAGGAGGAGGGGGAGGGGGCTC
CACGTGGGGATCGGGGACCGGGGGTTTTGACTCATCAAACGGCGGAGGTA
CGACCGGC
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