mRNA_E-fasciculatus_F_contig1602.4128.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1602.4128.1
Unique NamemRNA_E-fasciculatus_F_contig1602.4128.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: D8LAZ7_ECTSI (Transcription initiation factor TFIID subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ7_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 3.820e-115
Identity = 178/189 (94.18%), Postives = 184/189 (97.35%), Query Frame = 2 
Query:  176 VRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVHDEAGEMDVDPEQAQDQPSGNRNKKAKTTPGLETKKPLTLKEKKDQEEASRAKAEAKAARRRLQAQNARRG 742
            ++LLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGR+DLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLP IPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVHDEAGEMDVDPEQA    SGNRNKKAKTTPGLETKKPLTLKEKK+QEEA+RAKAEAKAARRRLQAQNA+RG
Sbjct:    1 MQLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVHDEAGEMDVDPEQAPSPLSGNRNKKAKTTPGLETKKPLTLKEKKEQEEANRAKAEAKAARRRLQAQNAKRG 189
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: F4P4F0_BATDJ (Uncharacterized protein (Fragment) n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4P4F0_BATDJ)

HSP 1 Score: 102 bits (253), Expect = 7.580e-23
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 2 
Query:  158 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQ 502
            RD K I  +L+ A V  YEPR++  L++   RY ++VL D++ +ADHAG  DL + D+RLA+  +      GPPSRE  +  A++ N IPLP IP+KFG+RLPP +   T  N Q
Sbjct:    2 RDAKLISLILQAAEVDDYEPRIIPQLLEFAHRYVQDVLQDSQVFADHAGHKDLEVDDIRLAIESRVAHSFTGPPSRETMMELAEKKNCIPLPLIPEKFGLRLPPERNTLTKANFQ 116
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: A0A177WG97_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WG97_BATDL)

HSP 1 Score: 102 bits (253), Expect = 1.210e-21
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 2 
Query:  158 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQ 502
            RD K I  +L+ A V  YEPR++  L++   RY ++VL D++ +ADHAG  DL + D+RLA+  +      GPPSRE  +  A++ N IPLP IP+KFG+RLPP +   T  N Q
Sbjct:   16 RDAKLISLILQAAEVDDYEPRIIPQLLEFAHRYVQDVLQDSQVFADHAGHKDLEVDDIRLAIESRVAHSFTGPPSRETMMELAEKKNCIPLPLIPEKFGLRLPPERNTLTKANFQ 130
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: A0A151Z337_9MYCE (Transcription initiation factor TFIID subunit n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z337_9MYCE)

HSP 1 Score: 103 bits (257), Expect = 1.790e-21
Identity = 55/123 (44.72%), Postives = 85/123 (69.11%), Query Frame = 2 
Query:  137 TKAALDQ-RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQ 502
            T+  LD+ RD + I  +L   GV SY+PRVV+ L++ M +Y  ++L D++ YA+H+G++++ + DVRL+++ + +  S  PP RE  +  A+E N+IPLPAIP+KFGV LPP +Y  T PN Q
Sbjct:   55 TQTNLDEPRDARIIKSILNTMGVQSYDPRVVNQLLEFMTKYVFDILQDSQVYAEHSGKTEMDVSDVRLSIQSRVNHTST-PPPREMVVGIAEEQNKIPLPAIPNKFGVFLPPDEYCITNPNYQ 176
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: A0A1S8VMC7_9FUNG (Uncharacterized protein n=3 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VMC7_9FUNG)

HSP 1 Score: 100 bits (250), Expect = 3.010e-21
Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 2 
Query:  158 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQ 502
            RD K +  +L+ A V  YEPR++  L++   RY ++VL D++ +ADHAG  +L + DVRLA+  +      GPPSRE  +  A++ N IPLP IP+KFG+RLPP +   T  N Q
Sbjct:   16 RDAKLVSLILQAADVDDYEPRLIPQLLEFAHRYVQDVLQDSQVFADHAGHKELEVDDVRLAIESRVAHSFTGPPSRETMMELAEKKNSIPLPLIPEKFGLRLPPERNTLTKANFQ 130
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: UPI000644E8C7 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E8C7)

HSP 1 Score: 102 bits (255), Expect = 5.810e-21
Identity = 54/123 (43.90%), Postives = 81/123 (65.85%), Query Frame = 2 
Query:  137 TKAALDQ-RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQ 502
            T+  LD+ RD + I  +LK  GV S++PRVV+ L++ M +Y  EVL D+  Y++H+GRS++ + D+RL+++ + +     PP RE  +  ++E NRIPLP IP KFGV LPP +Y    PN Q
Sbjct:  164 TQTNLDEPRDSRVIKNILKTMGVQSHDPRVVNQLLEFMFKYVYEVLQDSIAYSEHSGRSEIDISDIRLSIQSRVNFSFTQPPPRELLLSISEEKNRIPLPPIPQKFGVLLPPDEYCLNYPNYQ 286
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: A0A8H7PEA1_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PEA1_MORIS)

HSP 1 Score: 97.8 bits (242), Expect = 2.410e-20
Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 2 
Query:  158 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQWEAHAEPP 526
            RD K I  LL+  GV  ++P+VV  L++   RYT +V  DA  YA+HAGR D+ + DV+LAV+ +       PP RE  +  A E N++PLP IP+K+G+RLP  ++  T  N Q   +A PP
Sbjct:   17 RDAKIISLLLQSHGVHDFDPKVVHQLLEFAHRYTSDVFQDALVYAEHAGRQDIDLADVQLAVQGRVSHSFTSPPPREFLLELAQEKNKVPLPLIPEKYGIRLPHEKHCLTAINFQVLPNAPPP 139
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: A0A261Y2B0_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y2B0_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 4.820e-20
Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = 2 
Query:  158 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQ 502
            RD K I  +L+   V  YEP+VV  L++   RYT +V  DA  Y++HAG+S+L + D++LA++ + +     PP +E  +  ADE N+ PLP IP+K+G+RLPP ++  T  N Q
Sbjct:   11 RDAKIISLILRSLNVDDYEPKVVHQLLEFAYRYTSDVFQDALVYSEHAGKSELDIDDIQLAIQGRVNHSFTTPPPKEFLLELADEKNKQPLPLIPEKYGIRLPPERHTLTAINYQ 125
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: D3BFF9_POLPP (Transcription initiation factor TFIID subunit n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BFF9_POLPP)

HSP 1 Score: 100 bits (248), Expect = 1.030e-19
Identity = 54/123 (43.90%), Postives = 80/123 (65.04%), Query Frame = 2 
Query:  137 TKAALDQ-RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQ 502
            T+  LD+ RD + I  +LK  GV +++PRVV+ L++ M +Y  EVL D+  Y+DH+GRSD+ + D+RL+++ + +     PP RE  +   +E N+IPLP IP KFG+ LPP  Y  T PN Q
Sbjct:  236 TQTNLDEPRDARVIKNILKTMGVQAHDPRVVNQLLEFMFKYVYEVLQDSVAYSDHSGRSDIDISDIRLSIQSRVNFSFTQPPPRE--VCLFEEKNKIPLPPIPQKFGILLPPDDYCLTYPNYQ 356
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BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Match: A0A197JZG0_9FUNG (TFIID-31kDa-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JZG0_9FUNG)

HSP 1 Score: 95.9 bits (237), Expect = 1.280e-19
Identity = 49/125 (39.20%), Postives = 75/125 (60.00%), Query Frame = 2 
Query:  158 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVH 532
            RD K I  +L+   V   + +V+  L++   RYT +V  DA  Y++HAGR+D+G+ DVRLA++ + +     PP +E  +  A+E NR+PLP IP+K+G+RLP  ++  T  N Q      PP H
Sbjct:    8 RDAKVISLILQSLAVEDADQKVIHQLLEFAHRYTTDVFQDALLYSEHAGRTDVGLDDVRLAIQGRVNHSFTSPPPKEFLLELAEEKNRVPLPLIPEKYGIRLPHERHCLTAVNFQLIPELPPPTH 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1602.4128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAZ7_ECTSI3.820e-11594.18Transcription initiation factor TFIID subunit n=2 ... [more]
F4P4F0_BATDJ7.580e-2345.22Uncharacterized protein (Fragment) n=1 Tax=Batrach... [more]
A0A177WG97_BATDL1.210e-2145.22Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]
A0A151Z337_9MYCE1.790e-2144.72Transcription initiation factor TFIID subunit n=1 ... [more]
A0A1S8VMC7_9FUNG3.010e-2144.35Uncharacterized protein n=3 Tax=Batrachochytrium s... [more]
UPI000644E8C75.810e-2143.90hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8H7PEA1_MORIS2.410e-2043.09Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A261Y2B0_9FUNG4.820e-2041.74Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
D3BFF9_POLPP1.030e-1943.90Transcription initiation factor TFIID subunit n=1 ... [more]
A0A197JZG0_9FUNG1.280e-1939.20TFIID-31kDa-domain-containing protein n=1 Tax=Linn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1602contigE-fasciculatus_F_contig1602:6353..9835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score343.6
Seed ortholog evalue7e-92
Seed eggNOG ortholog2880.D8LAZ7
Preferred nameTAF9
KEGG koko:K02868,ko:K03133,ko:K05030,ko:K14535
KEGG TC1.A.13.1
KEGG Pathwayko03010,ko03022,ko04924,ko04972,ko05168,map03010,map03022,map04924,map04972,map05168
KEGG ModuleM00177
GOsGO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032947,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0043966,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046695,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcriptional preinitiation complex assembly
EggNOG OGsCOG5094@1,KOG3334@2759
Ec32 ortholog descriptionTranscription initiation factor TFIID subunit 9B
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021,ko03036,ko04040
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTranscription initiation factor TAFII31
Ec32 orthologEc-27_005820.1
Exons5
Model size1112
Cds size672
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928071.5714378-UTR-E-fasciculatus_F_contig1602:6352..67191622928071.5714378-UTR-E-fasciculatus_F_contig1602:6352..6719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1602 6353..6719 -
1695995811.467412-UTR-E-fasciculatus_F_contig1602:6352..67191695995811.467412-UTR-E-fasciculatus_F_contig1602:6352..6719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1602 6353..6719 -
1622928071.712312-UTR-E-fasciculatus_F_contig1602:9762..98351622928071.712312-UTR-E-fasciculatus_F_contig1602:9762..9835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1602 9763..9835 -
1695995811.5230803-UTR-E-fasciculatus_F_contig1602:9762..98351695995811.5230803-UTR-E-fasciculatus_F_contig1602:9762..9835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1602 9763..9835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928071.5901122-CDS-E-fasciculatus_F_contig1602:6719..69171622928071.5901122-CDS-E-fasciculatus_F_contig1602:6719..6917Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 6720..6917 -
1695995811.4819386-CDS-E-fasciculatus_F_contig1602:6719..69171695995811.4819386-CDS-E-fasciculatus_F_contig1602:6719..6917Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 6720..6917 -
1622928071.6052122-CDS-E-fasciculatus_F_contig1602:7461..76201622928071.6052122-CDS-E-fasciculatus_F_contig1602:7461..7620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 7462..7620 -
1695995811.4900813-CDS-E-fasciculatus_F_contig1602:7461..76201695995811.4900813-CDS-E-fasciculatus_F_contig1602:7461..7620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 7462..7620 -
1622928071.631213-CDS-E-fasciculatus_F_contig1602:8334..84711622928071.631213-CDS-E-fasciculatus_F_contig1602:8334..8471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 8335..8471 -
1695995811.498-CDS-E-fasciculatus_F_contig1602:8334..84711695995811.498-CDS-E-fasciculatus_F_contig1602:8334..8471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 8335..8471 -
1622928071.648595-CDS-E-fasciculatus_F_contig1602:8761..88311622928071.648595-CDS-E-fasciculatus_F_contig1602:8761..8831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 8762..8831 -
1695995811.5061166-CDS-E-fasciculatus_F_contig1602:8761..88311695995811.5061166-CDS-E-fasciculatus_F_contig1602:8761..8831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 8762..8831 -
1622928071.6608002-CDS-E-fasciculatus_F_contig1602:9654..97621622928071.6608002-CDS-E-fasciculatus_F_contig1602:9654..9762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 9655..9762 -
1695995811.514235-CDS-E-fasciculatus_F_contig1602:9654..97621695995811.514235-CDS-E-fasciculatus_F_contig1602:9654..9762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 9655..9762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1602.4128.1prot_E-fasciculatus_F_contig1602.4128.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1602 6720..9762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1602.4128.1

>prot_E-fasciculatus_F_contig1602.4128.1 ID=prot_E-fasciculatus_F_contig1602.4128.1|Name=mRNA_E-fasciculatus_F_contig1602.4128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=224bp
MASKSKKILLSGEPLHQAQARTKAALDQRDEKSIVRLLKDAGVTSYEPRV
VSHLVDRMRRYTREVLIDARDYADHAGRSDLGMQDVRLAVRKKQDALSAG
PPSREDQIRQADEVNRIPLPAIPDKFGVRLPPFQYQNTLPNLQWEAHAEP
PVHDEAGEMDVDPEQAQDQPSGNRNKKAKTTPGLETKKPLTLKEKKDQEE
ASRAKAEAKAARRRLQAQNARRG*
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mRNA from alignment at E-fasciculatus_F_contig1602:6353..9835-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1602.4128.1 ID=mRNA_E-fasciculatus_F_contig1602.4128.1|Name=mRNA_E-fasciculatus_F_contig1602.4128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3483bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1602:6353..9835- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTTGTGTTCTGTGTTGGCCGTGGCTGGTGCATCGTGCCGCACGAAGGC
AGCAGTCGTCCACGCGGCAAAGCATGGCGTCTAAATCGAAGAAGATTTTG
TTGTCAGGAGAGCCTCTCCACCAAGCCCAGGCCCGAACAAAGGCGGCTCT
GGACCAGCGGGACGAGAAATCGATTGTCAGGGTACGAGTCTGCTGTGTTG
GCTTGAACAACGTTGCTCGCCGCATGATTGATCATCCGCACACCCATAAC
TGCTGTCCAAGCCCGTCGAAAAATGTATGCATGTGTTGATCTCAGCAGCA
GGGGTTGTGGTGGATATCTGTTCAAGTTGGTACTCCGAGTTTCGGTGCTT
CGTGTGTGGGTTGTGATTGGAGGGCGCGGTGGGTATTGCAGAACTCCTCC
AGAAAGAAACATAGAAACTAAGAAATGGACAGGGCCATGTACGGAGTACA
TGTACTACTGCTGTACAGAGCCTGCTACGCAGCAGTTTCAAGACTAAGAT
TGGTTCGTGAAGCGATTTCGACATTGGCGGGTCATATGCATGGGGTCAAT
TTTGGAGATGTGGTTAGGTTTGCAGCTCGATCCCTCTCTCCATCGGGATA
GCTCCCGCTGGAAATGGGGGCCCGAGGGTAGCTGTCGGTCGCGATGTTTT
CAAATCTAGCTCTATTTTCACGTACGTACAGCAGTATTCGCGAAGTGAGC
GGGCGCTTCTGAGTTATCCACAAAAAGCGGTAGTTTTAAATTTTGGGCTG
AGAAAGGGCATGGATTTTGCTTAACGCAACATCCTCCGTTTACCGCTAGT
CTCCTCTGGTTCACAAGGACTTGTTCGGGTGGAACCGCCCTATACTTTTT
TCAAGTGATGCGCCCCCCCGGATTCCAATCCACCCCGCATGTGTCCTTTT
GCCCACCGTGGCCTTTACAACAGGAGGTTGTTGACCATACCCGGACTCTC
CTCCCTCGTTCTTGCCCGCGTCGAATGCATCGTGTTGACTTCTCCGCGCT
ACAGCTCCTCAAGGATGCAGGGGTGACATCCTACGAGCCTAGGGTGGTGA
GCCACCTGGTGGATCGCATGCGCAGTGAGTGCAGTTGTGTCACAAGCAGC
AGCAAAGTGCGGTGTTGGTGGTCTTGATCAATGTTCACGACGAGTGCCCA
ATGACGTGTGCGAGCTCGGCACCAGTTTCACGCGGCAGCGCTGCTATGTA
CTCAGCTTCCCTTTTCATTTTAGTTCTTTCGGTTGAACAACAGTTCGCTA
GCGGACGTTGGACTTGCTCTTGTCCTGTAGTTTGCGCACTCACACTTTTC
TCCGCACTCAAACCATACGCACATGCTCGCGGATAACGTACCTACCCTCA
TCTCCATGTGCTAGGATATACGCGGGAGGTGTTGATTGATGCGAGGGACT
ACGCTGACCACGCGGGGAGAAGCGACCTCGGCATGCAGGACGTGCGATTA
GCCGTGCGCAAGAAGCAGGATGCGTTGTCCGCCGGCCCTCCATCACGAGA
GGTACGGGAACGGCCCTTTTGCCGTATTCGTAAGACTAAGCACTCGGGCA
AACCTATTATAGCATGGGCCAGCCTTTTCACGTGGCGCTTGCGCCGGATG
TTGCGAGGTGGTGCAGTTGCCACTTTTGACGCAAGCTATGTTTTCCGATG
TTGGCCAAAGGGTTCTATGTATCTAACCGTTTTTCGGGGGCCATGGATAC
TGTAAGCGTTCCAAGGCCCTGCCACCATGGCGGCGGTTGGCCGAGCAATC
TAGCGCGCGCGAAGCCACCCGTCGTACCACCCGTACTGGTCAAGCAAACA
GCGGAATGGCCCGCTTGGTGATGTGATAAGCCTGGTCCGGTGAAAACCCG
GCGTGCTCGGTCAATTTTGGAGATGAGGTTAAGGTTGCTGCTCGATCCCT
GTCTCCATCGGAATAGCCCCCGCCGGACATGGGGGCCCAAGGGTAGCGGG
TCTGTTGATAATGTTTCTTGTTAAAATCTAGCTTTGCGTAGATACGTATT
CGCGAAGCGTGCGGACGCTTCTGTACTCATAGCCGTGCATGTCGTAGCCG
TTAGACCATTGACCTCGCATTCCTACAAAAGCCGAGACGGAGCTCCGCCA
AAGCCGAGCACCCCCCCACTCGCGCACCCGCTACAACAGCACTGCTGCAA
GATACTGACTGCTGTTATTGTGTTTTTTCACGTCTTGTGTGTGAATCTTT
TCGCCTGCCCCGCAGGACCAAATACGACAGGCCGACGAGGTCAACCGGAT
ACCCTTGCCGGCAATCCCCGACAAGTTCGGGGTGCGACTGCCGCCCTTCC
AATACCAAAACACGCTCCCCAACCTGCAGTGGGAAGCCCACGCAGAACCG
CCAGTCCACGATGAAGCGGGCGAGGTAAGCCCTCCCCGCGGACCATCCCA
TGCTTGTTCGCCACCTCGTTATCTCCAACGATTTTGGCCTTTTGGGTGTT
TACCACTACGTCAGAACCCCTTCTCTCTGTTTGTCTCGTGGGTTTTGTTG
CGTGGAATCTGTCGTGTGTACCTACTACCTACATCCAGGGTGGTGTTGCA
GTGTGGGGCGACCCGCTTAGTTTTGCCGTGCACATGACGGTCCGATCGGT
GCATGATGGTATTGCAACTCACTTGTCGTTCGGCGGGACAAGGCTGGCGC
CGCAGAGTAAAATGTCATGTGCCCAGGTATGACTCGGAACTTGTGCCGTG
CGTCAATCCTACAACACCCGTGCGGAATGCCAAACGCGCCACCCTCTTCT
CGCACGTGCTCAGAAATATCGATAATATCTTTTCTTCTCGGCCTGTCTCT
GTTTGCCCACTTCACTTCGTTGCTTTGCCTTGGGACTCCTTACTCCCAAG
GCGTCATGTCGCCGCCAATCTGAGGCATTTTCTCCTGATCCAAACTTTCG
CCCAACCCCTCTCCACAGATGGACGTGGACCCAGAGCAAGCTCAGGACCA
GCCTAGCGGCAACCGCAATAAGAAGGCCAAGACGACCCCGGGACTAGAGA
CGAAGAAGCCCTTGACTCTGAAAGAGAAGAAGGACCAGGAGGAGGCCAGC
AGGGCTAAGGCAGAAGCGAAGGCTGCGCGGAGACGACTGCAGGCGCAAAA
CGCGAGGAGGGGTTGATTGCGTATTGCCTTGGCACCGCGGGTCTCGTGGC
GCACGCCGGTTGTAGCGGCTTGACCTCCGCCGATGCGACGAACGGATGTG
GTGTGTGGAAGGATGGGGGTGGAGCAAGTGTACAGGAAGCACGATGAGGA
TCAGCGGAGTGTGGTGTAGTCCTGTAGTTTTTTGCGTTTTTCTTGTTCGT
CAAAGCAAAAGAAAGAGGCTCGAAAGGCCGGCTGTGTCGTGATTGGGAAC
AGTACGGCTTCCTGGATTCGAAAAAATAGCACATCTGCACCGCCTGCTTT
GGGCCCCTCAGCTGCATGTGCTTCCATGTTCCCGATGCGTCTCGGCTCAA
CTGCCTCTGTAGCGCCGGGCGTGTGTGGGGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1602:6353..9835-

>mRNA_E-fasciculatus_F_contig1602.4128.1 ID=mRNA_E-fasciculatus_F_contig1602.4128.1|Name=mRNA_E-fasciculatus_F_contig1602.4128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1602:6353..9835- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGTCTAAATCGAAGAAGATTTTGTTGTCAGGAGAGCCTCTCCACCA
AGCCCAGGCCCGAACAAAGGCGGCTCTGGACCAGCGGGACGAGAAATCGA
TTGTCAGGATGGCGTCTAAATCGAAGAAGATTTTGTTGTCAGGAGAGCCT
CTCCACCAAGCCCAGGCCCGAACAAAGGCGGCTCTGGACCAGCGGGACGA
GAAATCGATTGTCAGGCTCCTCAAGGATGCAGGGGTGACATCCTACGAGC
CTAGGGTGGTGAGCCACCTGGTGGATCGCATGCGCACTCCTCAAGGATGC
AGGGGTGACATCCTACGAGCCTAGGGTGGTGAGCCACCTGGTGGATCGCA
TGCGCAGATATACGCGGGAGGTGTTGATTGATGCGAGGGACTACGCTGAC
CACGCGGGGAGAAGCGACCTCGGCATGCAGGACGTGCGATTAGCCGTGCG
CAAGAAGCAGGATGCGTTGTCCGCCGGCCCTCCATCACGAGAGGATATAC
GCGGGAGGTGTTGATTGATGCGAGGGACTACGCTGACCACGCGGGGAGAA
GCGACCTCGGCATGCAGGACGTGCGATTAGCCGTGCGCAAGAAGCAGGAT
GCGTTGTCCGCCGGCCCTCCATCACGAGAGGACCAAATACGACAGGCCGA
CGAGGTCAACCGGATACCCTTGCCGGCAATCCCCGACAAGTTCGGGGTGC
GACTGCCGCCCTTCCAATACCAAAACACGCTCCCCAACCTGCAGTGGGAA
GCCCACGCAGAACCGCCAGTCCACGATGAAGCGGGCGAGGACCAAATACG
ACAGGCCGACGAGGTCAACCGGATACCCTTGCCGGCAATCCCCGACAAGT
TCGGGGTGCGACTGCCGCCCTTCCAATACCAAAACACGCTCCCCAACCTG
CAGTGGGAAGCCCACGCAGAACCGCCAGTCCACGATGAAGCGGGCGAGAT
GGACGTGGACCCAGAGCAAGCTCAGGACCAGCCTAGCGGCAACCGCAATA
AGAAGGCCAAGACGACCCCGGGACTAGAGACGAAGAAGCCCTTGACTCTG
AAAGAGAAGAAGGACCAGGAGGAGGCCAGCAGGGCTAAGGCAGAAGCGAA
GGCTGCGCGGAGACGACTGCAGGCGCAAAACGCGAGGAGGGGTTGAATGG
ACGTGGACCCAGAGCAAGCTCAGGACCAGCCTAGCGGCAACCGCAATAAG
AAGGCCAAGACGACCCCGGGACTAGAGACGAAGAAGCCCTTGACTCTGAA
AGAGAAGAAGGACCAGGAGGAGGCCAGCAGGGCTAAGGCAGAAGCGAAGG
CTGCGCGGAGACGACTGCAGGCGCAAAACGCGAGGAGGGGTTGA
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