mRNA_E-fasciculatus_F_contig16011.4126.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE) HSP 1 Score: 159 bits (402), Expect = 7.120e-44 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query: 1 LCYIRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISDS 228
LCYIRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSL+DQ KKMGLGAWEEISDS
Sbjct: 60 LCYIRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLMDQVKKMGLGAWEEISDS 135
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI) HSP 1 Score: 119 bits (298), Expect = 2.410e-29 Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query: 1 LCYIRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISD 225
LCYIRC ECK VDLC +CFF+G EP HKKTHSYRVMDKL KPI++E W+A EEL+L D +K GLGAWEEI+D
Sbjct: 23 LCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWSAVEELALADLTRKRGLGAWEEIAD 97
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: A0A1Y1W9F9_9FUNG (Transcriptional adapter 2 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W9F9_9FUNG) HSP 1 Score: 84.7 bits (208), Expect = 3.970e-17 Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1
Query: 10 IRCEECK--QEVDLCAACFFAGMEPLGHKKTHSYRVM------DKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISDSVRIDSPLPSRQLFLSIYVAN 288
IRC EC+ +E DLCAACF G+E HKKTHSYR++ ++ PIFTEDW+A EEL L+D ++ G+G W + ++ V + Q + +YVA+
Sbjct: 25 IRCHECEKFEEFDLCAACFAKGIEIGRHKKTHSYRIVRAWQLIEQHRFPIFTEDWSADEELLLIDGLRQFGMGNWRDAAEHVGTKTKEECEQHYKDVYVAS 125
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: A0A2G5BFS6_COERN (Transcriptional adapter 2 n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BFS6_COERN) HSP 1 Score: 83.2 bits (204), Expect = 1.360e-16 Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 10 IRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISDSVRIDSPLPSRQLFLSIYV 282
I C EC E DLC CF G+E HK HSYRV+ + PIFTEDW+A EEL L+D ++ G+G W++ ++ V + Q +LS+YV
Sbjct: 37 ISCNECP-EFDLCTTCFSRGIELGSHKNDHSYRVVTRHRFPIFTEDWSADEELLLIDGLRQFGMGNWKDAAEHVGTKTKEECEQHYLSVYV 126
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: A0A4D8XTF3_9ALVE (Uncharacterized protein n=1 Tax=Perkinsus sp. BL_2016 TaxID=2494336 RepID=A0A4D8XTF3_9ALVE) HSP 1 Score: 82.0 bits (201), Expect = 2.790e-16 Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 1
Query: 10 IRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISDSVRIDSPLPSRQLFLSIYV 282
IRC EC QE DLC CF G E HK+THSYRVM+KLD + + DWTA EEL L+ GLG W E++ V S + + Y+
Sbjct: 58 IRCAEC-QEFDLCLDCFSVGAEISSHKRTHSYRVMEKLDFSVLSSDWTAHEELMLLQALDLYGLGNWVEVAMHVGSQSKSKCEEHYYQYYI 147
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: A0A507CK27_9FUNG (Transcriptional adapter 2 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CK27_9FUNG) HSP 1 Score: 78.2 bits (191), Expect = 7.960e-15 Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 10 IRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISDSVRIDSPLPSRQLFLSIYVAN 288
IRC C + DLC CF +G E H+ H YRV+ LD PIF +DWTA EEL LV+ + G+G W+++S+ + S + +++ Y+AN
Sbjct: 45 IRCAACP-DYDLCVECFASGKETGTHQNDHPYRVIQVLDFPIFDKDWTAEEELLLVEGLEIFGMGNWDQVSEHLGNKSAPECKAHYINTYIAN 136
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: D2VY53_NAEGR (Transcriptional adapter n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VY53_NAEGR) HSP 1 Score: 77.8 bits (190), Expect = 1.120e-14 Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 10 IRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISDSV 231
IRC EC E DLCA CFF G+E HK H+YRVM+ L P+ + WTA EEL L++ + GLG W +I++ +
Sbjct: 70 IRCAEC-DEFDLCADCFFVGVETKEHKNDHAYRVMEYLQAPLLSTTWTADEELQLLEGISQKGLGNWLDIAEHI 142
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: A0A1R1YFA7_9FUNG (Transcriptional adapter 2 n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YFA7_9FUNG) HSP 1 Score: 77.4 bits (189), Expect = 1.290e-14 Identity = 44/91 (48.35%), Postives = 50/91 (54.95%), Query Frame = 1
Query: 10 IRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISDSVRIDSPLPSRQLFLSIYV 282
I C EC E DLC CF G+E HK HSY V+ K PIF+ DWTA EEL L+D K GLG WEE+S V S + IYV
Sbjct: 40 ISCFECS-EFDLCVTCFSKGIELGSHKYDHSYTVVSKHKFPIFSIDWTADEELLLIDGLLKFGLGNWEEVSIYVGSKSKKECESHYNKIYV 129
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: A0A507D1U5_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D1U5_9FUNG) HSP 1 Score: 77.4 bits (189), Expect = 1.560e-14 Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 10 IRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISDSVRIDSPLPSRQLFLSIYVAN 288
IRC C + DLC CF G E HK H YRV+ LD PIF +DWTA EEL LV+ + GLG W+++SD + + + ++ ++A+
Sbjct: 241 IRCAACT-DYDLCVECFSTGKESGTHKNDHPYRVIQVLDFPIFQKDWTAEEELLLVEGLEIFGLGNWDQVSDHLGSKNAAECKAHYIHTFIAS 332
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Match: A0A1R0H035_9FUNG (Transcriptional adapter 2 n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0H035_9FUNG) HSP 1 Score: 75.9 bits (185), Expect = 2.700e-14 Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 1
Query: 10 IRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLVDQAKKMGLGAWEEISDSVRIDSPLPSRQLFLSIYV 282
I C EC E DLC CF G+E HK +H+Y V+ K PIF DW+A EEL L+D + GLG WEE+S V S + +L YV
Sbjct: 40 ISCSECP-EFDLCVTCFSKGIELGSHKSSHAYAVVSKHKFPIFNIDWSADEELLLIDGLLQFGLGNWEEVSAYVGSKSIKECERHYLQTYV 129 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16011.4126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16011.4126.1 >prot_E-fasciculatus_F_contig16011.4126.1 ID=prot_E-fasciculatus_F_contig16011.4126.1|Name=mRNA_E-fasciculatus_F_contig16011.4126.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=96bp LCYIRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWback to top mRNA from alignment at E-fasciculatus_F_contig16011:175..683+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16011.4126.1 ID=mRNA_E-fasciculatus_F_contig16011.4126.1|Name=mRNA_E-fasciculatus_F_contig16011.4126.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=509bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16011:175..683+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16011:175..683+ >mRNA_E-fasciculatus_F_contig16011.4126.1 ID=mRNA_E-fasciculatus_F_contig16011.4126.1|Name=mRNA_E-fasciculatus_F_contig16011.4126.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16011:175..683+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |