mRNA_E-fasciculatus_F_contig16007.4122.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16007.4122.1
Unique NamemRNA_E-fasciculatus_F_contig16007.4122.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16007.4122.1 vs. uniprot
Match: D7G442_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G442_ECTSI)

HSP 1 Score: 473 bits (1216), Expect = 1.160e-158
Identity = 235/243 (96.71%), Postives = 241/243 (99.18%), Query Frame = 1 
Query:    1 EGHLAEAVSLQVPTKLPLVVVFSAVYGSPGEPSRGRGKMDVTEFMQGRVDLADGKYLFMSRKEPLTDLFGDPCPGRDKCLVLRYEIVGTEGRAEAIESDGRLLTPISISCTPMLAPLILVESATYGQTREGIDERLQLVQRDLSDLFAIQNRKDIGLPLSREDNRRLMGLRPLIGDLEYLKKLTPRYVDIRARLQARVEEHGGGLLEFVAAQTDVNQLFGNPMPGKRKELRVRYLVVVSESER 729
            EGHLAEAVSLQVPTKLPLVVVFSAVYGSPGEPSRGRGKMDVTEFMQGRVDLADGKYLFMSRKEPLTDLFGDPCPGRDKCLV+RYEIVGTEGRAEAIESDGRLLTPISISCTPMLAPLILVESATYGQTREGIDERLQLVQR+LSDLFAIQNRKDIG+PLSREDN+RLMGLRPLIGDL+YLKKLTPRYVDIRARLQARVEEHGGGLLEFVAAQTDVNQLFGNPMPGKRKELRVRYLVV  +SER
Sbjct:  105 EGHLAEAVSLQVPTKLPLVVVFSAVYGSPGEPSRGRGKMDVTEFMQGRVDLADGKYLFMSRKEPLTDLFGDPCPGRDKCLVIRYEIVGTEGRAEAIESDGRLLTPISISCTPMLAPLILVESATYGQTREGIDERLQLVQRELSDLFAIQNRKDIGMPLSREDNKRLMGLRPLIGDLKYLKKLTPRYVDIRARLQARVEEHGGGLLEFVAAQTDVNQLFGNPMPGKRKELRVRYLVVGHDSER 347
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BLAST of mRNA_E-fasciculatus_F_contig16007.4122.1 vs. uniprot
Match: A0A7S1UG82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG82_9STRA)

HSP 1 Score: 194 bits (494), Expect = 4.820e-57
Identity = 107/243 (44.03%), Postives = 151/243 (62.14%), Query Frame = 1 
Query:    1 EGHLAEAVSLQVPTKLPLVVVFSAVYGSPGEPSRGRGKMDVTEFMQGRVDLADGKYLFMSRKEPLTDLFGDPCPGRDKCLVLRYEIVGTEGRAEAIESDGRLLTPISISCTPMLAPLILVESATYGQTREGIDERLQLVQRDLSDLFAIQNRKDIGLPLSREDNRRLMGLRPLIGDLEYLKKLTPRYVDIRARLQARVEEHGGGLLEFVAAQTDVNQLFGNPMPGKRKELRVRYLVVVSESER 729
            +G +AE + ++VP + P + V +A+YG P    RGR  +DV+E +  RV   +GKYL +   E L  LFGDP PGRDK L L YEI G +GR  AIESDG L +PI+IS  P +AP+I++E A++G   EGI  R++ + + L  L     R+  GL LSR++   L     L  +L  L+  TP + DI   +QARV++ GGG  + V A  D+N++FGNPMPG  KELR+ Y ++  +SER
Sbjct:  119 DGFVAEDMLVRVPQERPYIKVRNAIYGHPRGIIRGRFAVDVSEVLNNRVIATEGKYLEIKATENLEPLFGDPQPGRDKELRLDYEITGAQGRVSAIESDGFLQSPIAISSYPQIAPMIIIEHASWGLDAEGIRLRIEALMKQLFKLTTYAARESAGLSLSRKEVLALSKADELQVELMDLENATPHFHDITRDIQARVDKDGGGRFD-VGADEDLNEVFGNPMPGHDKELRITYSIMGHDSER 360
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BLAST of mRNA_E-fasciculatus_F_contig16007.4122.1 vs. uniprot
Match: A0A7S0SUF6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUF6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.560e-33
Identity = 87/233 (37.34%), Postives = 127/233 (54.51%), Query Frame = 1 
Query:   37 PTKLPLVVVFSAVYGSP-GEPSRGRGKMDVTEFMQGRVDLADGKYLFMSRKEPLTDLFGDPCPGRDKCLVLRYEIVGTEGRAEAIESDGRLLTPISISCTPMLAPLILVESATYGQTREGIDERLQLVQRDLSDLFAIQNRKDIGLPLSREDNRRLMGLRP-LIGDLEYLKKLTPRYVDIRARLQARVEEHGGGLLEFVAAQTDVNQLFGNPMPGKRKELRVRYLVVVSESER 729
            PTK  L ++  A+YG P G  S G    DVTE +QG VDL  G YL +S +  ++ +FGDPCPG  K L + YE+ G  G     E  G L   I I  TP +APL+LV+ ATYG T     +RL+ ++++L  +  ++++   GL +S +D   L   +  +I D+   ++    ++DI  +LQ R+ + GG  L+      D N +FGNPMPG  K L V       +SER
Sbjct:  172 PTKRHLQII-RALYGHPKGRSSTGAMCTDVTEIVQGFVDLMGGSYLNLSPQSSVSQMFGDPCPGYTKDLRIEYEVSGRNGSIVRDEFRGHLKKRIYIEETPTVAPLLLVDKATYGVTPTSRRDRLRQLEKELIRIKTLEHKIHSGLYVSPDDYNYLNNNKQKIIDDMAATREAPISFLDITTKLQ-RLADKGGISLKLDKETFDPNLVFGNPMPGALKFLEVNLTCPGHDSER 402
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16007.4122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G442_ECTSI1.160e-15896.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1UG82_9STRA4.820e-5744.03Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0SUF6_9STRA7.560e-3337.34Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16007contigE-fasciculatus_F_contig16007:1128..2719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score474.6
Seed ortholog evalue2.9e-131
Seed eggNOG ortholog2880.D7G442
EggNOG OGs2EP30@1,2SSCD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size729
Cds size729
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16007.4122.1prot_E-fasciculatus_F_contig16007.4122.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16007 1128..2719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.5538437-CDS-E-fasciculatus_F_contig16007:1127..13231622928070.5538437-CDS-E-fasciculatus_F_contig16007:1127..1323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16007 1128..1323 -
1695995810.9499512-CDS-E-fasciculatus_F_contig16007:1127..13231695995810.9499512-CDS-E-fasciculatus_F_contig16007:1127..1323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16007 1128..1323 -
1622928070.57161-CDS-E-fasciculatus_F_contig16007:1582..17831622928070.57161-CDS-E-fasciculatus_F_contig16007:1582..1783Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16007 1583..1783 -
1695995810.9667172-CDS-E-fasciculatus_F_contig16007:1582..17831695995810.9667172-CDS-E-fasciculatus_F_contig16007:1582..1783Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16007 1583..1783 -
1622928070.5866265-CDS-E-fasciculatus_F_contig16007:2111..23291622928070.5866265-CDS-E-fasciculatus_F_contig16007:2111..2329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16007 2112..2329 -
1695995810.977561-CDS-E-fasciculatus_F_contig16007:2111..23291695995810.977561-CDS-E-fasciculatus_F_contig16007:2111..2329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16007 2112..2329 -
1622928070.6014404-CDS-E-fasciculatus_F_contig16007:2605..27191622928070.6014404-CDS-E-fasciculatus_F_contig16007:2605..2719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16007 2606..2719 -
1695995810.988176-CDS-E-fasciculatus_F_contig16007:2605..27191695995810.988176-CDS-E-fasciculatus_F_contig16007:2605..2719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16007 2606..2719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16007.4122.1

>prot_E-fasciculatus_F_contig16007.4122.1 ID=prot_E-fasciculatus_F_contig16007.4122.1|Name=mRNA_E-fasciculatus_F_contig16007.4122.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=243bp
EGHLAEAVSLQVPTKLPLVVVFSAVYGSPGEPSRGRGKMDVTEFMQGRVD
LADGKYLFMSRKEPLTDLFGDPCPGRDKCLVLRYEIVGTEGRAEAIESDG
RLLTPISISCTPMLAPLILVESATYGQTREGIDERLQLVQRDLSDLFAIQ
NRKDIGLPLSREDNRRLMGLRPLIGDLEYLKKLTPRYVDIRARLQARVEE
HGGGLLEFVAAQTDVNQLFGNPMPGKRKELRVRYLVVVSESER
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mRNA from alignment at E-fasciculatus_F_contig16007:1128..2719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16007.4122.1 ID=mRNA_E-fasciculatus_F_contig16007.4122.1|Name=mRNA_E-fasciculatus_F_contig16007.4122.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1592bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16007:1128..2719- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGGACACCTTGCGGAGGCGGTATCTCTCCAAGTGCCGACGAAGTTGCC
CCTCGTGGTGGTGTTTTCTGCGGTGTATGGCTCTCCCGGCGAGCCTTCGC
GGGGGCGTGGCAAGGTGAGACACCTACCGGAATAAACGAGCACACGTTGA
TTATGAAACTGGACGTATAAGATCTTGTTCATGCCTATTTCGGGCCTCAA
GTTATTGGTTTACGCTACATTGTGTGTGGTACAGAAGTTGTGCAGACCTC
AGCGTTAATGGCATCTAGGGACCTCTTGCTGCTGCTGCTGCTGCGTGCAA
GACTCGAATAGGAATAGGACTCAAAACGCTCATCAGTAAAACCTTTGTCC
GTGTATCTCTCAACCCAACCTTGTAACTGTCTACACTCAGATGGACGTGA
CAGAGTTCATGCAGGGCAGGGTCGACCTCGCGGACGGAAAGTACCTCTTC
ATGTCTCGAAAGGAACCGCTCACAGATCTCTTCGGCGACCCTTGCCCTGG
CCGAGATAAATGCTTGGTGCTTCGGTACGAGATCGTCGGTACGGAAGGGA
GGGCGGAGGCGATCGAGTCAGACGGGCGGCTGTTGACACCAATTAGCATC
AGCTGCACGTGAGAAATATAGGAGTATCAAGACGAAACACTGATGAGCAA
TAGCCCCTGTGGGCGAGCAAAGTGGTGACCAGCTGCTTTCGCCAACCTGC
TTGGTTGGGTAGCTTGGTGTATTTCTTCAAGGCAACGTTCGGTTTCAAGG
TAGACACTGTTGTCAATGAACACTACTTGTGCCCGATGAAGATTTATTGT
TGGCCCCCGCCGCGGTACAGTAATTAAGCAGGATCACAAAAAAACTGGTC
GACAACTTGGTCAATCACCTCCACGCACCTTTTGACCGAAAACAACATGC
TTGTAATTACTGGTACACTTTGTATCGCTTTCGCAGGCCTATGTTGGCGC
CACTGATCCTCGTGGAATCCGCAACCTATGGGCAGACACGAGAGGGCATC
GATGAACGTCTGCAGCTGGTGCAGAGAGATCTTTCCGACCTGTTCGCCAT
CCAGAACCGCAAAGACATTGGGTTGCCCCTCAGCCGTGAGGACAACAGGA
GGCTCATGGGGCTCAGGCCTCTCATCGGCGATCTCGAGTGAGTTGTGTCG
ATGGAGGAAAATAACCCGGAGGCCACGGATGGTGTCTGTCTCAAGCGAGG
ATTGGGGCTAAAAAGGCACACGTCCGGGGTGTTGATCGCGCCTATATCAC
ACCAAGGGATGGTGGGAGAGGCTTTGGCGTTTACATGTCTATGACCCCCT
GTACTCCTACAAGTTTCACCCAACACTTACCACCAATGCCTGACTATGTA
AGTGCGTTATTCCTTCCTTTCACCGCTGCTTTCCATTGTCCCTCAGGTAC
CTGAAGAAGCTGACTCCCAGGTACGTTGATATCAGGGCGCGTCTGCAGGC
GAGGGTGGAGGAGCACGGTGGGGGACTGCTGGAATTCGTGGCGGCCCAAA
CAGATGTCAATCAGCTCTTCGGGAACCCAATGCCGGGAAAAAGAAAGGAG
CTGCGGGTGCGGTATCTCGTCGTGGTGAGCGAGAGCGAGCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16007:1128..2719-

>mRNA_E-fasciculatus_F_contig16007.4122.1 ID=mRNA_E-fasciculatus_F_contig16007.4122.1|Name=mRNA_E-fasciculatus_F_contig16007.4122.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16007:1128..2719- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGGACACCTTGCGGAGGCGGTATCTCTCCAAGTGCCGACGAAGTTGCC
CCTCGTGGTGGTGTTTTCTGCGGTGTATGGCTCTCCCGGCGAGCCTTCGC
GGGGGCGTGGCAAGGAGGGACACCTTGCGGAGGCGGTATCTCTCCAAGTG
CCGACGAAGTTGCCCCTCGTGGTGGTGTTTTCTGCGGTGTATGGCTCTCC
CGGCGAGCCTTCGCGGGGGCGTGGCAAGATGGACGTGACAGAGTTCATGC
AGGGCAGGGTCGACCTCGCGGACGGAAAGTACCTCTTCATGTCTCGAAAG
GAACCGCTCACAGATCTCTTCGGCGACCCTTGCCCTGGCCGAGATAAATG
CTTGGTGCTTCGGTACGAGATCGTCGGTACGGAAGGGAGGGCGGAGGCGA
TCGAGTCAGACGGGCGGCTGTTGACACCAATTAGCATCAGCTGCACATGG
ACGTGACAGAGTTCATGCAGGGCAGGGTCGACCTCGCGGACGGAAAGTAC
CTCTTCATGTCTCGAAAGGAACCGCTCACAGATCTCTTCGGCGACCCTTG
CCCTGGCCGAGATAAATGCTTGGTGCTTCGGTACGAGATCGTCGGTACGG
AAGGGAGGGCGGAGGCGATCGAGTCAGACGGGCGGCTGTTGACACCAATT
AGCATCAGCTGCACGCCTATGTTGGCGCCACTGATCCTCGTGGAATCCGC
AACCTATGGGCAGACACGAGAGGGCATCGATGAACGTCTGCAGCTGGTGC
AGAGAGATCTTTCCGACCTGTTCGCCATCCAGAACCGCAAAGACATTGGG
TTGCCCCTCAGCCGTGAGGACAACAGGAGGCTCATGGGGCTCAGGCCTCT
CATCGGCGATCTCGAGCCTATGTTGGCGCCACTGATCCTCGTGGAATCCG
CAACCTATGGGCAGACACGAGAGGGCATCGATGAACGTCTGCAGCTGGTG
CAGAGAGATCTTTCCGACCTGTTCGCCATCCAGAACCGCAAAGACATTGG
GTTGCCCCTCAGCCGTGAGGACAACAGGAGGCTCATGGGGCTCAGGCCTC
TCATCGGCGATCTCGAGTACCTGAAGAAGCTGACTCCCAGGTACGTTGAT
ATCAGGGCGCGTCTGCAGGCGAGGGTGGAGGAGCACGGTGGGGGACTGCT
GGAATTCGTGGCGGCCCAAACAGATGTCAATCAGCTCTTCGGGAACCCAA
TGCCGGGAAAAAGAAAGGAGCTGCGGGTGCGGTATCTCGTCGTGGTGAGC
GAGAGCGAGCGCGTACCTGAAGAAGCTGACTCCCAGGTACGTTGATATCA
GGGCGCGTCTGCAGGCGAGGGTGGAGGAGCACGGTGGGGGACTGCTGGAA
TTCGTGGCGGCCCAAACAGATGTCAATCAGCTCTTCGGGAACCCAATGCC
GGGAAAAAGAAAGGAGCTGCGGGTGCGGTATCTCGTCGTGGTGAGCGAGA
GCGAGCGC
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