mRNA_E-fasciculatus_F_contig16003.4120.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16003.4120.1
Unique NamemRNA_E-fasciculatus_F_contig16003.4120.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16003.4120.1 vs. uniprot
Match: D7FSW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 5.090e-41
Identity = 85/97 (87.63%), Postives = 85/97 (87.63%), Query Frame = -1 
Query:  285 HPAGGAARERMVLETTNAEECTALVDEINELVRRAGLQRGGGGSSARGRDLFDEWVRSAVGRDAHAVDLGEKGEAVEVAPEGRGSAEGDTPVALPAG 575
            HPAG A RERMVLETTNAEECTALVDEINELVRRAGLQRGGGGSSARGRDLFDEWVRSAVGRDA AVD G  GEA E A EGRGSA GD PVAL AG
Sbjct:  806 HPAG-ATRERMVLETTNAEECTALVDEINELVRRAGLQRGGGGSSARGRDLFDEWVRSAVGRDAQAVDPGANGEAAEGAQEGRGSAGGDAPVALLAG 901
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BLAST of mRNA_E-fasciculatus_F_contig16003.4120.1 vs. uniprot
Match: A0A6H5LEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEL5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.250e-32
Identity = 69/75 (92.00%), Postives = 69/75 (92.00%), Query Frame = -1 
Query:  351 HPAGGAARERMVLETTNAEECTALVDEINELVRRAGLQRGGGGSSARGRDLFDEWVRSAVGRDAHAVDLGEKGEA 575
            HPAG A RERMVLETTNAEECTALVDEINELVRRAGLQRGGGGSSARGRDLFDEWVRSAVGRDA AVD G  GEA
Sbjct:  782 HPAG-ATRERMVLETTNAEECTALVDEINELVRRAGLQRGGGGSSARGRDLFDEWVRSAVGRDAQAVDPGANGEA 855
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16003.4120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSW4_ECTSI5.090e-4187.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LEL5_9PHAE5.250e-3292.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16003contigE-fasciculatus_F_contig16003:2192..2772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size581
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.4189177-UTR-E-fasciculatus_F_contig16003:2191..24121622928070.4189177-UTR-E-fasciculatus_F_contig16003:2191..2412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16003 2192..2412 +
1695995810.9119582-UTR-E-fasciculatus_F_contig16003:2191..24121695995810.9119582-UTR-E-fasciculatus_F_contig16003:2191..2412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16003 2192..2412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.4636228-CDS-E-fasciculatus_F_contig16003:2412..27721622928070.4636228-CDS-E-fasciculatus_F_contig16003:2412..2772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16003 2413..2772 +
1695995810.9229162-CDS-E-fasciculatus_F_contig16003:2412..27721695995810.9229162-CDS-E-fasciculatus_F_contig16003:2412..2772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16003 2413..2772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16003.4120.1prot_E-fasciculatus_F_contig16003.4120.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16003 2413..2772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16003.4120.1

>prot_E-fasciculatus_F_contig16003.4120.1 ID=prot_E-fasciculatus_F_contig16003.4120.1|Name=mRNA_E-fasciculatus_F_contig16003.4120.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp
MALQTLERPPRSLEIAQLLLPPSRQSNRGVALGATPALRSNLHRLTLLTE
IDSVGVTPYRRPHPLVEEISPSRGRAASAALQAGPAHQLVDLVHEGGALL
GVGGLQHHPLPRRPPGRVRR
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mRNA from alignment at E-fasciculatus_F_contig16003:2192..2772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16003.4120.1 ID=mRNA_E-fasciculatus_F_contig16003.4120.1|Name=mRNA_E-fasciculatus_F_contig16003.4120.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=581bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16003:2192..2772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTCACTTGACTTGTCACTGTCCACTACCTGACTGACTGGCCCAATGTCT
GCACGCGATCGCTTGTAAGGGCTACAGCTTACAGGCTCTTTGGTTTCCCT
TGCCCTTTGTATCCGCCTTGCCTTTCGTCCCTTCCCCTCGTCAACCCAGC
GAGTATAAACAGCTTTTCCCAGCTCAAGAAAACGTTGAAGGAAACAAGAC
CCTGAGGCGTTCTACCGGTCAATGGCCCTCCAAACCTTGGAACGACCTCC
TCGCAGTCTAGAAATAGCGCAACTCTTACTCCCCCCCAGCAGGCAGAGCA
ACCGGGGTGTCGCCCTCGGCGCTACCCCTGCCCTCCGGAGCAACCTCCAC
CGCCTCACCCTTCTCACCGAGATCGACAGCGTGGGCGTCACGCCCTACCG
CCGACCGCACCCACTCGTCGAAGAGATCTCTCCCTCGCGCGGAAGAGCCG
CCTCCGCCGCGCTGCAGGCCGGCCCGGCGCACCAGCTCGTTGATCTCGTC
CACGAGGGCGGTGCACTCCTCGGCGTTGGTGGTCTCCAGCACCATCCTCT
CCCTCGCCGCCCCCCCGGCAGGGTGAGGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16003:2192..2772+

>mRNA_E-fasciculatus_F_contig16003.4120.1 ID=mRNA_E-fasciculatus_F_contig16003.4120.1|Name=mRNA_E-fasciculatus_F_contig16003.4120.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16003:2192..2772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCCTCCAAACCTTGGAACGACCTCCTCGCAGTCTAGAAATAGCGCA
ACTCTTACTCCCCCCCAGCAGGCAGAGCAACCGGGGTGTCGCCCTCGGCG
CTACCCCTGCCCTCCGGAGCAACCTCCACCGCCTCACCCTTCTCACCGAG
ATCGACAGCGTGGGCGTCACGCCCTACCGCCGACCGCACCCACTCGTCGA
AGAGATCTCTCCCTCGCGCGGAAGAGCCGCCTCCGCCGCGCTGCAGGCCG
GCCCGGCGCACCAGCTCGTTGATCTCGTCCACGAGGGCGGTGCACTCCTC
GGCGTTGGTGGTCTCCAGCACCATCCTCTCCCTCGCCGCCCCCCCGGCAG
GGTGAGGAGGATGGCCCTCCAAACCTTGGAACGACCTCCTCGCAGTCTAG
AAATAGCGCAACTCTTACTCCCCCCCAGCAGGCAGAGCAACCGGGGTGTC
GCCCTCGGCGCTACCCCTGCCCTCCGGAGCAACCTCCACCGCCTCACCCT
TCTCACCGAGATCGACAGCGTGGGCGTCACGCCCTACCGCCGACCGCACC
CACTCGTCGAAGAGATCTCTCCCTCGCGCGGAAGAGCCGCCTCCGCCGCG
CTGCAGGCCGGCCCGGCGCACCAGCTCGTTGATCTCGTCCACGAGGGCGG
TGCACTCCTCGGCGTTGGTGGTCTCCAGCACCATCCTCTCCCTCGCCGCC
CCCCCGGCAGGGTGAGGAGG
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