mRNA_E-fasciculatus_F_contig16002.4119.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16002.4119.1
Unique NamemRNA_E-fasciculatus_F_contig16002.4119.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: D8LDJ7_ECTSI (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ7_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.140e-47
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW
Sbjct:   51 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 129
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: A0A835YQU3_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.440e-37
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            VHP+VLFSVLDHYLRRPE Q RVIGTLLG V ANVVE+TNSFAVPH EKNDEVAVGKDFNK MLAL   VNG+E +VGW
Sbjct:   43 VHPVVLFSVLDHYLRRPEGQVRVIGTLLGKVNANVVEVTNSFAVPHQEKNDEVAVGKDFNKQMLALSGLVNGQERIVGW 121
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: K0TIU7_THAOC (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIU7_THAOC)

HSP 1 Score: 112 bits (281), Expect = 1.930e-28
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            VHP+VL SVLDH+ RR E   RVIGTLLG    + VEITNSFAVPH E+ DEVA+GKDFN+ ML+L  R N RE+VVGW
Sbjct:   44 VHPLVLLSVLDHHTRRQEGAGRVIGTLLGKRNGDTVEITNSFAVPHAERGDEVAIGKDFNRQMLSLHLRANPRETVVGW 122
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: A0A067D1T1_SAPPC (Eukaryotic translation initiation factor 3 subunit F n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D1T1_SAPPC)

HSP 1 Score: 111 bits (277), Expect = 3.520e-28
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTAN--VVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            +HP+V+F +LD +LRR E+QKRVIGTLLG V A   VV I+NSF VPHLEK DEVAVGKD+++ ML L QRVN  E VVGW
Sbjct:   15 IHPVVVFQILDRFLRRSEDQKRVIGTLLGVVDAEHGVVTISNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGW 95
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: A0A7S2WB79_9STRA (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB79_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.880e-28
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            VHP VLFS+LDH++RR E Q RVIGTLLG V  + VE+TN FAVPH +K DEVAVG+ FNK+M  L QRVN +E +VGW
Sbjct:   70 VHPAVLFSILDHFIRRQEGQVRVIGTLLGYVEESCVEVTNCFAVPHSDKQDEVAVGQAFNKTMYDLHQRVNPKEQIVGW 148
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: A0A7S2DND3_9STRA (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DND3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.720e-28
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            +HP VLFS++DH++RRPE Q RVIGTLLG  T   VE+ N FAVPH EK DEVAVG+ FNK+M +L  RVN +E +VGW
Sbjct:   34 IHPSVLFSIIDHFIRRPEGQTRVIGTLLGYSTDTHVELVNCFAVPHSEKQDEVAVGQTFNKNMCSLHTRVNTKEKIVGW 112
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: A0A7S1ZLF8_9STRA (Eukaryotic translation initiation factor 3 subunit F n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZLF8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.890e-28
Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            VHP+VL SVLDH+ RR E   RVIGTLLG    + VEITN FAVPH E+ DEVA+GKDFN+ MLAL  R N RESVVGW
Sbjct:   38 VHPLVLLSVLDHHTRRQEGAGRVIGTLLGRRDGDKVEITNCFAVPHAERGDEVAIGKDFNRQMLALHLRANKRESVVGW 116
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: B8LD20_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD20_THAPS)

HSP 1 Score: 110 bits (274), Expect = 1.020e-27
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            VHP+VL SVLDH+ RR E   RVIGTLLG    + VEITN FAVPH E+ DEVA+GKDFN+ MLAL  R N RE+V+GW
Sbjct:    3 VHPIVLLSVLDHHTRRQEGAGRVIGTLLGRRDGDKVEITNCFAVPHAERGDEVAIGKDFNRQMLALHLRANKRETVIGW 81
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: A0A6G0W460_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W460_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.360e-27
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTAN--VVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            +HP+V+F +LD YLRR E+Q+RVIGTLLG +     VV +TNSF VPHLEK DEVAVGKD+++ ML L QRVN  E VVGW
Sbjct:   15 IHPVVVFQILDRYLRRAEDQERVIGTLLGVLDTEHGVVTVTNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGW 95
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BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Match: A0A8J9TEL0_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TEL0_PHATR)

HSP 1 Score: 109 bits (273), Expect = 1.380e-27
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 VHPMVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGW 237
            VHP+VL  VLDH+ RR E   RVIGTLLG    NVVE+TN F+VPH E+ +EVA+GKDFNK+ML L  R N +E+VVGW
Sbjct:    3 VHPVVLLHVLDHHTRRQEESGRVIGTLLGRQNGNVVEVTNCFSVPHAERGEEVAIGKDFNKTMLGLHLRANRKETVVGW 81
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16002.4119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDJ7_ECTSI1.140e-47100.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A835YQU3_9STRA1.440e-3782.28Eukaryotic translation initiation factor 3 subunit... [more]
K0TIU7_THAOC1.930e-2867.09Eukaryotic translation initiation factor 3 subunit... [more]
A0A067D1T1_SAPPC3.520e-2866.67Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2WB79_9STRA3.880e-2865.82Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2DND3_9STRA5.720e-2863.29Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S1ZLF8_9STRA5.890e-2868.35Eukaryotic translation initiation factor 3 subunit... [more]
B8LD20_THAPS1.020e-2765.82Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A6G0W460_9STRA1.360e-2764.20Eukaryotic translation initiation factor 3 subunit... [more]
A0A8J9TEL0_PHATR1.380e-2763.29Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16002contigE-fasciculatus_F_contig16002:465..1117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D8LDJ7
Preferred nameEIF3F
KEGG koko:K03249
KEGG Pathwayko03013,map03013
GOsGO:0000003,GO:0000122,GO:0001732,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006355,GO:0006357,GO:0006412,GO:0006413,GO:0006464,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008593,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009790,GO:0009791,GO:0009793,GO:0009846,GO:0009856,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0016020,GO:0016032,GO:0016043,GO:0016282,GO:0016579,GO:0016787,GO:0019080,GO:0019081,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023056,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031369,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034622,GO:0034641,GO:0034645,GO:0036211,GO:0036459,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045747,GO:0045892,GO:0045934,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0075522,GO:0080090,GO:0097159,GO:0101005,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1310@1,KOG2975@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontranslation initiation factor eIF3 f subunit
Ec32 orthologEc-15_000300.1
Exons2
Model size240
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16002.4119.1prot_E-fasciculatus_F_contig16002.4119.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16002 465..1108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.3106658-CDS-E-fasciculatus_F_contig16002:464..5481622928070.3106658-CDS-E-fasciculatus_F_contig16002:464..548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16002 465..548 -
1695995810.8851826-CDS-E-fasciculatus_F_contig16002:464..5481695995810.8851826-CDS-E-fasciculatus_F_contig16002:464..548Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16002 465..548 -
1622928070.3328488-CDS-E-fasciculatus_F_contig16002:961..11081622928070.3328488-CDS-E-fasciculatus_F_contig16002:961..1108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16002 962..1108 -
1695995810.8954854-CDS-E-fasciculatus_F_contig16002:961..11081695995810.8954854-CDS-E-fasciculatus_F_contig16002:961..1108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16002 962..1108 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.353919-UTR-E-fasciculatus_F_contig16002:1108..11171622928070.353919-UTR-E-fasciculatus_F_contig16002:1108..1117Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16002 1109..1117 -
1695995810.9035897-UTR-E-fasciculatus_F_contig16002:1108..11171695995810.9035897-UTR-E-fasciculatus_F_contig16002:1108..1117Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16002 1109..1117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16002.4119.1

>prot_E-fasciculatus_F_contig16002.4119.1 ID=prot_E-fasciculatus_F_contig16002.4119.1|Name=mRNA_E-fasciculatus_F_contig16002.4119.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
MVLFSVLDHYLRRPENQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEV
AVGKDFNKSMLALQQRVNGRESVVGW*
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mRNA from alignment at E-fasciculatus_F_contig16002:465..1117-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16002.4119.1 ID=mRNA_E-fasciculatus_F_contig16002.4119.1|Name=mRNA_E-fasciculatus_F_contig16002.4119.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=653bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16002:465..1117- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCACCCAATGGTGCTGTTCTCGGTGCTGGACCACTACCTGCGACGACC
GGAGAACCAGAAGCGCGTTATCGGAACCTTGTTGGGCACCGTGACGGCGA
ACGTTGTCGAGATCACTAACTCGTTCGCCGTGCCCCACCTGGAGAAGAAC
GACGAGGTACATTCATGCGACATGTATTGTTTCTTTGGAACATCGGCTGT
TTATTCACTCTCTGACAAGGTGTGACATCTATTCTCAAGATCAGTTGTAC
ACCTGTGTGCTGGCGTTGTTTCATTTTTCTGGACATGATTGTTTGCGTGT
TGCTTAATACAGACGATGGTGATCGGTACGAGCAGTTTTTCCTTGGTGAC
TTGTGTCAGTCATTACACCTTTCCTAGCACAACTTTTTTTGTAAAAGAGT
GCCGCATTTTGTTGTTTTGTTTTTCTTCTCGCATGTCACCGTCTTGTTGC
CATCGTCCTACACGTGCTACTCGTCTTCCTCTTTCGTTTCCTCGCTCGCT
CTCGATGTTTCTCTCGCCAAACAACTGCTCATGTTGGTGGTCCGTGTCTG
TCCTGGTTGCCCCTCAAAGGTCGCCGTGGGTAAAGACTTCAACAAGTCCA
TGCTCGCGTTGCAGCAGCGGGTCAACGGGAGAGAATCAGTCGTCGGCTGG
TAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16002:465..1117-

>mRNA_E-fasciculatus_F_contig16002.4119.1 ID=mRNA_E-fasciculatus_F_contig16002.4119.1|Name=mRNA_E-fasciculatus_F_contig16002.4119.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16002:465..1117- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGCTGTTCTCGGTGCTGGACCACTACCTGCGACGACCGGAGAACCA
GAAGCGCGTTATCGGAACCTTGTTGGGCACCGTGACGGCGAACGTTGTCG
AGATCACTAACTCGTTCGCCGTGCCCCACCTGGAGAAGAACGACGAGATG
GTGCTGTTCTCGGTGCTGGACCACTACCTGCGACGACCGGAGAACCAGAA
GCGCGTTATCGGAACCTTGTTGGGCACCGTGACGGCGAACGTTGTCGAGA
TCACTAACTCGTTCGCCGTGCCCCACCTGGAGAAGAACGACGAGGTCGCC
GTGGGTAAAGACTTCAACAAGTCCATGCTCGCGTTGCAGCAGCGGGTCAA
CGGGAGAGAATCAGTCGTCGGCTGGTAAGTCGCCGTGGGTAAAGACTTCA
ACAAGTCCATGCTCGCGTTGCAGCAGCGGGTCAACGGGAGAGAATCAGTC
GTCGGCTGGTAA
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