mRNA_E-fasciculatus_F_contig1600.4118.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1600.4118.1
Unique NamemRNA_E-fasciculatus_F_contig1600.4118.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: D7FQ95_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ95_ECTSI)

HSP 1 Score: 456 bits (1173), Expect = 7.520e-158
Identity = 287/315 (91.11%), Postives = 294/315 (93.33%), Query Frame = 1 
Query:    1 MDMDTRQELAEATALLETAKGPRVRKALSGLVASLQSAAAAEPAQAETDSSXXXXXXXXXXXXXXXXXXXXGVPAALSGSHLPEAEEGKAAAEAAAASV-PAAKVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAAKERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGSYENWANLAAKKAKKIDTKANPQAGIMDMMKDMYDDGDESTKKLIGEGAMLKSHQNRGGPPGSSFDKPDPYGSSSSGLGXXXXXXXXXXG---KSSSPFDGLG 933
            MDMDTRQELAEATALLETAKGPRVRKALSGLVASLQS AAAEPA+AETD  XXXXXXXXXXXXXXXXXXX  VPAALSGSHLPEAE G+AAAEAA A V PA KVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAAKERVSCSFTSRGFDLTVKDLNGK+YRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYG+Y+NWANLAAKKAK++D KANPQAGIMDMMKDMYDDGDESTKKLIGE AMLKSHQNRG PPGSSFDKPDPYGS SS   XXXXXXXXXX    KSSSPFDGLG
Sbjct:    1 MDMDTRQELAEATALLETAKGPRVRKALSGLVASLQSTAAAEPAEAETDXXXXXXXXXXXXXXXXXXXXXDDVPAALSGSHLPEAE-GQAAAEAAGAPVVPATKVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAAKERVSCSFTSRGFDLTVKDLNGKSYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGTYDNWANLAAKKAKRVDPKANPQAGIMDMMKDMYDDGDESTKKLIGE-AMLKSHQNRGAPPGSSFDKPDPYGSGSSSXXXXXXXXXXXXXXXXKSSSPFDGLG 313
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: A0A6H5L5T1_9PHAE (SGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T1_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 4.130e-111
Identity = 223/293 (76.11%), Postives = 234/293 (79.86%), Query Frame = 1 
Query:    1 MDMDTRQELAEATALLETAKGPRVRKALSGLVASLQSAAAAEPAQAETDSSXXXXXXXXXXXXXXXXXXXXG--VPAALSGSHLPEAEEGKAAAEAAAASV-PAAKVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAAKERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQK--------------------------------VKGEYGSYENWANLAAKKAKKIDTKANPQAGIMDMMKDMYDDGDESTKKLIGE 774
            MDMDTRQELAEATALLETAKGPRVRKALSGLVASLQS AAAEPA+AETD  XXXXXXXXXXXXXXXXXXXX   VPAALSGSHLPEAE G+AAAEAA A V PAAKVEGGVPAPPRAPER                +PKVSVYVPLEGVG AKERVSCSFT+RGFDLTVKDLNGK+YRLLQNNLDKDIVPGESKILVKRDKVIVKLQK                                VKGEYG+Y+NWANLAAKKAK++DTKA+PQAGIMDMMKDMYD+GDESTKKLIGE
Sbjct:    1 MDMDTRQELAEATALLETAKGPRVRKALSGLVASLQSTAAAEPAEAETDXXXXXXXXXXXXXXXXXXXXXXXDDVPAALSGSHLPEAE-GQAAAEAAGAPVVPAAKVEGGVPAPPRAPER----------------NPKVSVYVPLEGVGEAKERVSCSFTTRGFDLTVKDLNGKSYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKAYRLDQARLEFQEYGRELTIVDTCLPTPRPDKVKGEYGTYDNWANLAAKKAKRVDTKADPQAGIMDMMKDMYDEGDESTKKLIGE 276
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: A0A7S2Y2M6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2M6_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.320e-52
Identity = 88/155 (56.77%), Postives = 118/155 (76.13%), Query Frame = 1 
Query:  355 YATVEKFAWDQGSFSSPKVSVYVPLEGVGAAKERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGSYENWANLAAKKAKKIDTKANPQAGIMDMMKDMYDDGDESTKKLIGEGAMLKSHQNRGGPPG 819
            Y+T+  F WDQG ++SP V +Y+ L+GVGA K+RV+C FT   FDL V DL+GKNYRLL++NLDKDIVP ESK +VK++++ +KL+KVKGEY S+++W +L AKK K    K +P A IMDMMKDMY DGD++ KK+IGE AM+K+ +     PG
Sbjct:   76 YSTIATFGWDQGEYNSPWVFIYISLDGVGACKDRVACDFTKSSFDLKVIDLDGKNYRLLKDNLDKDIVPSESKCIVKKNRITIKLKKVKGEY-SFDHWTDLVAKKKKSDSKKEDPSASIMDMMKDMYQDGDDNMKKIIGE-AMMKAQRGEKSEPG 228
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: A0A7S3XYD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYD2_HETAK)

HSP 1 Score: 180 bits (457), Expect = 9.500e-52
Identity = 99/205 (48.29%), Postives = 142/205 (69.27%), Query Frame = 1 
Query:  247 PEAEEGKAAAEAAAASVPAAKVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAAKERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGSYENWANLAAKKAKKID----TKANPQAGIMDMMKDMYDDGDESTKKLIGEGAMLKSHQNRGGPPGSSFDKPDPYG 849
            PE ++ +A AE  AAS PA       PA    P++ + +++ F+WDQG +++P V++Y+ L+GVGA K+ V+ +FT+  FD+T+ DLNGKNYRL++ NLDK+I+P ESK +VK +K+I+KL+KVKGEY SY++W  L AK+AK       TK +P  G+M MMKDMY+DGD++ KK+IGE AM KS +     P SSF     +G
Sbjct:   53 PEEDKPEAGAEDGAASPPAP------PASSAQPKKVFTSIDSFSWDQGEYNTPWVTIYLFLDGVGAVKDNVTSNFTASSFDVTITDLNGKNYRLIKENLDKEIIPAESKHIVKANKIIIKLKKVKGEY-SYDHWTGLTAKRAKTGGAAGATKEDPMGGLMSMMKDMYEDGDDNMKKVIGE-AMEKSMRGEKSDPTSSFGGDSSFG 249
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: A0A7S2W426_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W426_9STRA)

HSP 1 Score: 173 bits (439), Expect = 5.670e-49
Identity = 97/180 (53.89%), Postives = 121/180 (67.22%), Query Frame = 1 
Query:  283 AAASVPAAKVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAAKERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGSYENWANLAAKKAK--KIDTKANPQAGIMDMMKDMYDDGDESTKKLIGEGAMLKSHQNRGGPP 816
            A AS P       VP P  A    +  + KFAWD G +++P V VY+ LEGVGA KE V CSF+  GFDL V  L GKNYRLL++NL+KDIV GESK +VK+D++ +KL+KVKG+Y SYE W NL AKK K  K    A+P  GIMDMMKDMY+DGD+S +K+I E +M K+    G  P
Sbjct:   72 ATASAPTVPEPAIVPVPRGA---SFIPISKFAWDSGEYNTPWVCVYITLEGVGAVKESVECSFSKDGFDLRVTGLGGKNYRLLKDNLEKDIVAGESKCIVKKDRITLKLRKVKGDY-SYETWTNLTAKKGKTEKKAKGADPMGGIMDMMKDMYEDGDDSMRKIIEE-SMRKARSGEGSSP 246
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: A0A835YKN5_9STRA (CS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN5_9STRA)

HSP 1 Score: 171 bits (432), Expect = 9.540e-48
Identity = 88/156 (56.41%), Postives = 121/156 (77.56%), Query Frame = 1 
Query:  340 APER-KYATVEKFAWDQGSFSSPKVSVYVPLEGVGAAKERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGSYENWANLAAKKAKKIDTKAN--PQAGIMDMMKDMYDDGDESTKKLIGEGAMLKSHQ 798
            AP++ K+  +  FAWDQG ++S  VSVYV L GVG AK+RV+C+F +  FDL V+DL GK+YRL+++NLDK+IVP +SK+LVK+DKV+VKL+K KG++G  E+WANL AK+  K     +  P A IM+MMKDMYD+GD++ +K+IGE +MLKS Q
Sbjct:   88 APDKPKFEAITTFAWDQGEYNSEWVSVYVTLPGVGTAKDRVACTFDTFAFDLQVRDLEGKSYRLIKDNLDKEIVPDQSKVLVKKDKVVVKLRKSKGQFGP-EHWANLTAKRPHKAAAAKDKDPSASIMEMMKDMYDEGDDNMRKIIGE-SMLKSQQ 241
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: A0A7S2EW43_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EW43_TRICV)

HSP 1 Score: 171 bits (433), Expect = 2.900e-47
Identity = 94/178 (52.81%), Postives = 128/178 (71.91%), Query Frame = 1 
Query:  268 AAAEAAAASVPAAKVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAA-KERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGSYENWANLAAKKAKKIDTKANPQAGIMDMMKDMYDDGDESTKKLIGEGAMLKSHQ 798
            AA+   A S PAA V+   P PP     K+  ++KF++D G ++S +V++YVPL GVG+  + +V+C FT+  FDLTV+DL GK+YRL ++NL+KDI    SK +VK DKVI+KL K KGEYGSY++W  L AKKAKK   K +P AGIM++MK+MYDDGD++ KK+IGE  MLK  +
Sbjct:  138 AASAVPAESKPAAPVKPVAP-PPIPSTAKFIPIDKFSFDAGGYNSDRVTLYVPLPGVGSIPRSQVTCDFTTGSFDLTVRDLKGKDYRLFKDNLEKDIDVSTSKRVVKADKVIIKLGKCKGEYGSYDHWQGLTAKKAKKKAGKEDPSAGIMNLMKEMYDDGDDNMKKMIGE-TMLKQRR 313
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: A0A7S2ESS6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ESS6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.130e-45
Identity = 83/160 (51.88%), Postives = 117/160 (73.12%), Query Frame = 1 
Query:  343 PERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAA-KERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGSYENWANLAAKKAKKID--TKANPQAGIMDMMKDMYDDGDESTKKLIGEGAMLKSHQNRGGP 813
            P   Y T+++F++D G + SP V++YVPL  VG+  K++++C FTS  FDL V+DL+GK+YRL ++NLD +I P +SK +VK DK++VKL K KGEYGSY++W++L AKKAKK    +K +P AGIMD+MKDMY+ GD+  KK+IGE  M +      GP
Sbjct:  141 PPAHYNTIDRFSFDAGKYDSPFVTLYVPLPSVGSHDKDKITCDFTSTQFDLIVRDLSGKSYRLFKDNLDNEIDPSKSKYIVKADKILVKLGKKKGEYGSYDHWSDLTAKKAKKKKGASKEDPAAGIMDLMKDMYESGDDKMKKMIGETMMKQRRGELNGP 300
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: A0A7S0FMR0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMR0_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.570e-43
Identity = 87/186 (46.77%), Postives = 122/186 (65.59%), Query Frame = 1 
Query:  256 EEGKAAAEAAAASVPAAKVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAA-KERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGSYENWANLAAKKAKKIDTKA--NPQAGIMDMMKDMYDDGDESTKKLIGEGAMLKSHQNR 804
            EE   ++  A  +VPA        AP   P + Y T++K+ +D G ++S  VS+YV L  VG+  ++ ++C FT   FDL V+DL GK+YRL+ +NL+ DIVP +SKILVK DK+++KL K K EYGSY++W+ L AKK KK       NP AGIMD+MK MYD+GD++ KK+IGE  M K  + +
Sbjct:   69 EETAPSSAPALTAVPAPAXXXAAVAPFIIPSQHYTTIDKYMFDAGGYNSATVSIYVALPNVGSIPRDSITCDFTPSSFDLIVRDLGGKSYRLVNDNLENDIVPDKSKILVKADKIVLKLGKKKSEYGSYDHWSQLTAKKDKKXXXXXXXNPAAGIMDLMKQMYDEGDDNMKKMIGE-TMQKQREGK 253
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Match: A0A1Z5J663_FISSO (Calcyclin binding protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J663_FISSO)

HSP 1 Score: 158 bits (399), Expect = 3.370e-43
Identity = 90/189 (47.62%), Postives = 127/189 (67.20%), Query Frame = 1 
Query:  253 AEEGKAAAEAAAASVPAAKVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGA-AKERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVK-GEYGSYENWANLAAKKAKKIDTKAN-PQAGIMDMMKDMYDDGDESTKKLIGEGAMLKSHQNRGG 810
            AE G+AA   AA  V AA  +   P    +P  KY ++++FA+D G + +P V++Y+PL GVG+ + + V CSFT   FDL V+DL GK+YRLL++NL+KDI P +SK ++K DKV++KL KVK  EYG Y+ W  L  KK +K  +K + PQ  IMD+MKDMY++GD++ KK+IGE  M +     GG
Sbjct:   60 AETGEAAPVPAAVPVVAA-TDSSAPVA-ASPSIKYVSIDRFAFDAGGYDAPFVTLYIPLSGVGSISADNVQCSFTKDSFDLIVRDLQGKSYRLLKDNLEKDIDPAKSKYIIKSDKVVLKLHKVKTSEYGGYDYWTKLTDKKDRKSSSKKDDPQKSIMDLMKDMYNEGDDNMKKVIGETFMKQQRGELGG 246
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1600.4118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ95_ECTSI7.520e-15891.11CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L5T1_9PHAE4.130e-11176.11SGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y2M6_9STRA1.320e-5256.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XYD2_HETAK9.500e-5248.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W426_9STRA5.670e-4953.89Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A835YKN5_9STRA9.540e-4856.41CS domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2EW43_TRICV2.900e-4752.81Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2ESS6_9STRA1.130e-4551.88Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0FMR0_9STRA1.570e-4346.77Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1Z5J663_FISSO3.370e-4347.62Calcyclin binding protein n=2 Tax=Fistulifera sola... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1600contigE-fasciculatus_F_contig1600:11970..17192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.1
Seed ortholog evalue4.3e-127
Seed eggNOG ortholog2880.D7FQ95
KEGG koko:K04507
KEGG Pathwayko04310,map04310
EggNOG free text desc.S100 protein binding
EggNOG OGsKOG3260@1,KOG3260@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-01_006980.1
Exons7
Model size954
Cds size954
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.160255-CDS-E-fasciculatus_F_contig1600:11969..120291622928070.160255-CDS-E-fasciculatus_F_contig1600:11969..12029Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 11970..12029 +
1695995810.8259704-CDS-E-fasciculatus_F_contig1600:11969..120291695995810.8259704-CDS-E-fasciculatus_F_contig1600:11969..12029Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 11970..12029 +
1622928070.1823072-CDS-E-fasciculatus_F_contig1600:12926..132191622928070.1823072-CDS-E-fasciculatus_F_contig1600:12926..13219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 12927..13219 +
1695995810.8359582-CDS-E-fasciculatus_F_contig1600:12926..132191695995810.8359582-CDS-E-fasciculatus_F_contig1600:12926..13219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 12927..13219 +
1622928070.1967576-CDS-E-fasciculatus_F_contig1600:13900..140411622928070.1967576-CDS-E-fasciculatus_F_contig1600:13900..14041Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 13901..14041 +
1695995810.8439357-CDS-E-fasciculatus_F_contig1600:13900..140411695995810.8439357-CDS-E-fasciculatus_F_contig1600:13900..14041Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 13901..14041 +
1622928070.2125378-CDS-E-fasciculatus_F_contig1600:14682..148031622928070.2125378-CDS-E-fasciculatus_F_contig1600:14682..14803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 14683..14803 +
1695995810.8519418-CDS-E-fasciculatus_F_contig1600:14682..148031695995810.8519418-CDS-E-fasciculatus_F_contig1600:14682..14803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 14683..14803 +
1622928070.2285883-CDS-E-fasciculatus_F_contig1600:15554..156451622928070.2285883-CDS-E-fasciculatus_F_contig1600:15554..15645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 15555..15645 +
1695995810.86003-CDS-E-fasciculatus_F_contig1600:15554..156451695995810.86003-CDS-E-fasciculatus_F_contig1600:15554..15645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 15555..15645 +
1622928070.2454019-CDS-E-fasciculatus_F_contig1600:16268..163391622928070.2454019-CDS-E-fasciculatus_F_contig1600:16268..16339Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 16269..16339 +
1695995810.868108-CDS-E-fasciculatus_F_contig1600:16268..163391695995810.868108-CDS-E-fasciculatus_F_contig1600:16268..16339Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 16269..16339 +
1622928070.2609103-CDS-E-fasciculatus_F_contig1600:17015..171921622928070.2609103-CDS-E-fasciculatus_F_contig1600:17015..17192Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 17016..17192 +
1695995810.876205-CDS-E-fasciculatus_F_contig1600:17015..171921695995810.876205-CDS-E-fasciculatus_F_contig1600:17015..17192Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 17016..17192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1600.4118.1prot_E-fasciculatus_F_contig1600.4118.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1600 11970..17192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1600.4118.1

>prot_E-fasciculatus_F_contig1600.4118.1 ID=prot_E-fasciculatus_F_contig1600.4118.1|Name=mRNA_E-fasciculatus_F_contig1600.4118.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=318bp
MDMDTRQELAEATALLETAKGPRVRKALSGLVASLQSAAAAEPAQAETDS
SSSSRTAAPAVAPAGGDGGGDGVPAALSGSHLPEAEEGKAAAEAAAASVP
AAKVEGGVPAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAAK
ERVSCSFTSRGFDLTVKDLNGKNYRLLQNNLDKDIVPGESKILVKRDKVI
VKLQKVKGEYGSYENWANLAAKKAKKIDTKANPQAGIMDMMKDMYDDGDE
STKKLIGEGAMLKSHQNRGGPPGSSFDKPDPYGSSSSGLGGLGGLGGGGA
GKSSSPFDGLGAGLGGLG
back to top

mRNA from alignment at E-fasciculatus_F_contig1600:11970..17192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1600.4118.1 ID=mRNA_E-fasciculatus_F_contig1600.4118.1|Name=mRNA_E-fasciculatus_F_contig1600.4118.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5223bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1600:11970..17192+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACATGGACACGAGACAAGAGCTGGCGGAAGCCACCGCTTTGCTGGA
GACGGCGAAGGTATAGTTGAAGCAGTGAGAGAATGCGATGCAGCAGACTG
CATCACATCACCAGTGCTTGGCTTGGGGGTGAGAGACGAGACGAGGAATG
GCGTTCTTCCCTGCCTTGCCTTCAGACAAACATAAGACGAGCAAGGCAAG
CACGCCCCAGCAAGACTCCCCCCACCGCAGGCAGTTTGGATTCACGAGGG
CACGTATTCTTCACGCCTACAGAGATACTGGTGGTCTACGGGTAACTGTG
GCTTCTAGGGCAGTGCTTAGGGAGGTGTCTCCTGGCGCTCGAAGTTTGGG
TTCCTTGAGCAAGACAGGGGGCATGTTGATGTTGATATGCAGCCTCACAC
GACATCGATCTCGTCTACTATTCAGAGTACGGAATATTGCAGACAGCGCA
GCTTCTTTGACACTCAACGGAGGGCGCGCGTTTTCACTTGATCGATCGCA
CTCTTTGCTGCAGGTATGAGCGTTTTGCGAAACTGTGGGATTCATGGTCT
GCGCGGCTCTGGCTTCGCTGTTTGTAGGGCTCAGCTAGGGACGACCAGTT
CCTGTCGGCGTAGCAAAATGCAACCGGCCGGTTGCCTTGACTTCGTTGCT
CCCAACCCTAGTCCTATGGTCGGAATCCCTCCACCGGCGCACCGGTGCAC
CCAGCGCGGCGCTGTTGCAGCACGCACCCCAAACCAAACTCCCTCAACAT
GGCAACATTGCATAGTGTCAACCGGTCCGTGTGTTGTGAGAGAGGGGTGG
TGGTGCCAACGGCGTAAACCTGCTTCGACCGCTCCGTACTTTCGGGACTC
CATTTTTTGAAAACATTACCCCCCCTCCCCCCCCAAGAAAACATTCCGAT
GCTCAAAAGCTGTTTCGGTTCCCCCTCGCTACCTTTCCCTCTTCCTCCCC
CGAAAAGGGCCCAAGGGTTCGAAAGGCCCTCTCAGGTCTTGTCGCCTCGC
TGCAGAGCGCCGCGGCGGCAGAGCCAGCGCAAGCCGAGACCGACAGCAGC
AGCAGCAGCAGAACGGCGGCGCCGGCGGTGGCGCCGGCCGGAGGTGATGG
TGGCGGAGACGGTGTCCCGGCGGCCTTGAGCGGGTCTCACTTGCCGGAGG
CGGAGGAGGGAAAAGCGGCAGCAGAAGCTGCAGCTGCTTCTGTTCCTGCC
GCCAAGGTGGAGGGAGGCGTGCCGGCCCCGCCTCGCGCGCCCGAGAGAAA
GTGAGACGGAAGAGGAAGTGGCGCAGATTAGTCGCTGGGCTTGGCTTGGC
TAGGCTGACACTTGACCTTGTTGACTCCCTGTTATTTTTGTTGCTATTTA
AGTGGTGCCCACGTACTTGGTAGTAGAAGTTTGTTTGGGGGAGGAGACGG
AGGCAGATGTGTACACGGTAAATCTTGTGGCTACTGGTTGTAGGCGTGGC
GTGGCGTGGCGTGTTGCCTCACAACTCCGGGTGCTCAGCCCCTTTCCCGA
GCGACCCCTCGCTCCCTGTGGCCCTGTATCGTTATCGCAATTGCTTTTTT
TCGCATCACCCCACCTGGCGGGTATCTACCACACCAGTTCAGTGTCGCCT
GATTTTGGTGTATGCCTGCCAAGAATATAATACAATATCGGTTGTGTGCT
TCGTGTTATGCATACGTGCACCGTTACATATCTTGGTGCTCGGGTTGTTT
GACTTGCTATCTGTCTTTCTCGCCCGACGAGGCGCCTTCGAAGAAAAAGA
CGGCCGGATTAGTTTCTCGAGAGAGGATGCGCCAGCCGCCATACTGCCCG
CGCGGTACTTCACAGACATTTTGCTTTCTGGGGGATTCCTTCTTCCCTAA
AGCACCAAACCACCACAATCCCGCCTGCGTACCGCGCCTGCCTCACGTTT
TCTTGCAAACAACACACGACGTCACGTCAAGGTACGCGACCGTCGAAAAG
TTCGCCTGGGACCAGGGGAGCTTCAGCAGCCCGAAGGTGTCCGTTTACGT
CCCGCTCGAGGGCGTCGGCGCGGCGAAAGAGCGTGTTTCGTGCTCCTTCA
CCTCCCGTGGGTTCGACCTCACGTAAGTGTACATGGTCTGTTCGGCTGGC
CTGTTTCCTACAATACTGGGTAGACACCCTCCCCCGGGTTAATACCCGTT
GGTAGCTGCTTTTCCGTTGTCCTCTTCCTCCACAGGGAGATTGACCCGCG
TGACGATGATGATGGCGTTCTGAGGCCGTCAGATGGCAGGGTTGGGACGT
AAATGACGCTTTGCTGCTTACTTGGTAGGGCAACGGGTACAGCGACAGCA
TACGAGACTGCCAGAATTCAAAAGTAAAATTACCCACTACTACGTGCGGC
GGTCGGCACACGTCATGTCATGTGATCATTCGGCAAGTCGGTGGAAGCTT
TTTTCGTTACCAAGCGAAGGACTGGGTTGTGGGCCACACGAATTTTTTGA
AAAGGAGCCTATGAGACGGTCACGACGTTACAAGGAGGCGTGCGTGTGCG
TGCGTGTGGGGAAGAATTTCGGTGACAAGGGAGGTGTGGGTCCTGCGTTG
TGATCGGCGGGCTCCTGTATGGATCGGGCGCCTATTTACTGCGGAGTTTT
TTCGACATCCCTCGTGGTTGACTTGATTGCTCGCATCTGCTGCTGCTGCT
GCTGCTGCTGTCGCTGTCGCTGTCGCTGCTTTTTTTTTGTCTGGACGTGT
CTTCGTTGTTCAGGGTGAAGGATCTTAACGGCAAGAACTACCGGCTGCTG
CAGAACAACCTCGACAAGGACATCGTGCCAGGCGAAAGCAAGATCCTGGT
GAAGAGAGACAAGGTCATCGTCAAGCTGCAGAAGGTATGCATACAACACT
ACGATTGCTAAGTTTTGTCCTTATCGAAGATAGATGTGAATCAGTCGATC
CGCCCAGCCTAGAAACCATGCAAATCCCTCCCCATTACGGACGACAGTGA
GGTAAATCCGAACCTGCACGTCTTTTGAAGGTGTAAGTCGCTAGACCTTG
TCGACACTACACAAACAAGCATTCGTGCAGGAGCAGTATTAATGCAATAT
TTTGTGGTATTTCTTGAGTGCTTGTTGTTGTGGGGTTGTACTGTTGTGGC
GTGCTAGTGTTGCTACTAACAGCGTTAAATCAAATTTTCGCATTTCTGGT
GGAACCCGGGTCTTTTTGCTCACTCCTCCAGTGGTGTGGCAAGTTTGGCC
GAAAGACACTCGTGAGCTTGAAAGGTCGCGTTAAAAAGTGGTTCCGCCCA
CCACCAACGCGGGCGTAGTTCCTTTCGTGATACGTGGAAGTTCCCTATCA
TTTCGATCGGGCTAGGTTGAGAGTTCCGAGAGTGTGGACAGGAGCTCACA
ATCGTGGACACCTGTCCGCCAACTCCAAGGTCGGACAAGGTGACCGCTGC
ATCTCTCGGGCAATAGCACCTCGGAACGTTACTCGGATTGGGGGTTGGAT
CTCTATTCACCAAATCTGTCTCCGGCGAACGTTCTCAAGTCTTGCATGCG
CGAACGTACCACCTTACGAAAGAGGTTCATCCTGGCCCCCCACGCCTGCA
CTGCTGTTTTGTCCCTCTTCTGTATTGTATTTTAGGTGAAGGGCGAGTAC
GGGAGCTACGAAAACTGGGCCAACTTGGCGGCGAAGAAGGCGAAGAAAAT
CGACACCAAGGCTAACCCACAAGCAGGTGACAACGCGCAACATTTTGGAA
CAATATTTTGGACGCTCAAACCTCCACCGCAGCCGGTCTTTCTTTGATGT
GGTATTGTATCGTCTGGGCTACTGGCTCTATGTCGTATCGTCTGGGCTAC
TCTATACTCTAGACAAGTAAACAAGCTCCGGAGAAATTGTCGCTGTTTGT
CGCAACGAAAGTAGGCGATGTGGACAGATGCATAGCACGAGGGGTTGACC
TGACGGAATCGATCGAAGCGTTGCTGAACGATAGGGAAGCTCTATTTTTT
GCGGTGATTATGACACGAAAGACATGCGAGGTTCGGTATGCAAAGGGTCG
AGCAGCCAGTAGCAGGCAGAGATGGGCAAAGCGGTTGTTGGCACCTCGAC
TCTCGAGCCAAACGGCAAAGCCTCCTCGCGTTTTTGTGACAGTTTTGTGT
GGTTGCTTTCGGAGAATCTCAGGTGTTCGTTGTCGGAACGCGGCAAGTAC
GCATAGCAGCGATGAAACGCCAGAAGGATGGCAGATGCTGAAACAAGCAC
GGGTACACTTCCCAAGATACGCTCAAGTTGTTTTTTGTTCTGTGTTCTGA
GCAAACACCGTTGCCTCTCCTCTCGGGTGCCGTGTGAAATATACCGCAGG
AATCATGGACATGATGAAGGACATGTACGACGACGGAGATGAATCTACCA
AGAAGCTCATTGGTGAGGGCGTGAGAGCTAGCTAGCAGGGTGGTAGGGTC
GCGAGTGTAACTGTCACGTCATGCGATACCTTTCGGGCTACGAGCGGCGA
TCAGCTGTGGCTGAGTGACAACACCAGACGAGCACAATTTTTACCTCAAG
GCGCATTTCACAAGCGCCGCATTTGCTGAACTTCCCCTGAAATACTGCAT
CGCATTCTCGCAAGACTCATTATTGTTGGTGTTCCACAGGCTTTCTGGCG
TTCATTCTGGCGCACTCGCCCCGATGCAGGTGTCGCCGAGTTGCTTTCGC
TTCTTCCCCGGCCCCTATCCCATCAATGCCAACGCATTTTCCGTCGGGTG
CAGTTGATGCTTTCACTCTTGAGTTTGTTGCGTGCAAAGCAAAGGGAGGT
TCAAGGTTGAACAACGAACACCTGAAAACATGCCCAGCTGTCACGCACAG
CAGGAAGAGGAAGAGGATAAGCAGGCTGCCGTTGGCGTGTAGGAGTAGTA
TTGTATCGGTATCAGTCACGGTAGACTTTGTTCCTTTGTTTTCCAAACGA
AAAATGTTTGTGACGCCCACCCGGACCTTGCTCGTGCGTCACACCGTACC
GAATTGTCGTCCCTTGTCCCTTACGGGCCGGCCCGCTTTGCCGTGCCCCC
GTTGTGTCGACGCCCGCTCCTCCGTCCACCCCCAACAACAGGAGAGGCGA
TGTTGAAATCGCACCAGAACCGAGGTGGCCCACCGGGGTCCTCGTTCGAC
AAGCCCGACCCCTACGGCAGCAGCAGCAGCGGCCTTGGCGGCCTCGGCGG
TCTCGGCGGGGGGGGCGCCGGCAAATCATCGTCGCCCTTCGATGGTCTCG
GGGCGGGGCTCGGCGGCCTTGGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1600:11970..17192+

>mRNA_E-fasciculatus_F_contig1600.4118.1 ID=mRNA_E-fasciculatus_F_contig1600.4118.1|Name=mRNA_E-fasciculatus_F_contig1600.4118.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1908bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1600:11970..17192+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACATGGACACGAGACAAGAGCTGGCGGAAGCCACCGCTTTGCTGGA
GACGGCGAAGATGGACATGGACACGAGACAAGAGCTGGCGGAAGCCACCG
CTTTGCTGGAGACGGCGAAGGGCCCAAGGGTTCGAAAGGCCCTCTCAGGT
CTTGTCGCCTCGCTGCAGAGCGCCGCGGCGGCAGAGCCAGCGCAAGCCGA
GACCGACAGCAGCAGCAGCAGCAGAACGGCGGCGCCGGCGGTGGCGCCGG
CCGGAGGTGATGGTGGCGGAGACGGTGTCCCGGCGGCCTTGAGCGGGTCT
CACTTGCCGGAGGCGGAGGAGGGAAAAGCGGCAGCAGAAGCTGCAGCTGC
TTCTGTTCCTGCCGCCAAGGTGGAGGGAGGCGTGCCGGCCCCGCCTCGCG
CGCCCGAGAGAAAGGCCCAAGGGTTCGAAAGGCCCTCTCAGGTCTTGTCG
CCTCGCTGCAGAGCGCCGCGGCGGCAGAGCCAGCGCAAGCCGAGACCGAC
AGCAGCAGCAGCAGCAGAACGGCGGCGCCGGCGGTGGCGCCGGCCGGAGG
TGATGGTGGCGGAGACGGTGTCCCGGCGGCCTTGAGCGGGTCTCACTTGC
CGGAGGCGGAGGAGGGAAAAGCGGCAGCAGAAGCTGCAGCTGCTTCTGTT
CCTGCCGCCAAGGTGGAGGGAGGCGTGCCGGCCCCGCCTCGCGCGCCCGA
GAGAAAGTACGCGACCGTCGAAAAGTTCGCCTGGGACCAGGGGAGCTTCA
GCAGCCCGAAGGTGTCCGTTTACGTCCCGCTCGAGGGCGTCGGCGCGGCG
AAAGAGCGTGTTTCGTGCTCCTTCACCTCCCGTGGGTTCGACCTCACGTA
CGCGACCGTCGAAAAGTTCGCCTGGGACCAGGGGAGCTTCAGCAGCCCGA
AGGTGTCCGTTTACGTCCCGCTCGAGGGCGTCGGCGCGGCGAAAGAGCGT
GTTTCGTGCTCCTTCACCTCCCGTGGGTTCGACCTCACGGTGAAGGATCT
TAACGGCAAGAACTACCGGCTGCTGCAGAACAACCTCGACAAGGACATCG
TGCCAGGCGAAAGCAAGATCCTGGTGAAGAGAGACAAGGTCATCGTCAAG
CTGCAGAAGGGTGAAGGATCTTAACGGCAAGAACTACCGGCTGCTGCAGA
ACAACCTCGACAAGGACATCGTGCCAGGCGAAAGCAAGATCCTGGTGAAG
AGAGACAAGGTCATCGTCAAGCTGCAGAAGGTGAAGGGCGAGTACGGGAG
CTACGAAAACTGGGCCAACTTGGCGGCGAAGAAGGCGAAGAAAATCGACA
CCAAGGCTAACCCACAAGCAGGTGAAGGGCGAGTACGGGAGCTACGAAAA
CTGGGCCAACTTGGCGGCGAAGAAGGCGAAGAAAATCGACACCAAGGCTA
ACCCACAAGCAGGAATCATGGACATGATGAAGGACATGTACGACGACGGA
GATGAATCTACCAAGAAGCTCATTGGTGAGGGCGAATCATGGACATGATG
AAGGACATGTACGACGACGGAGATGAATCTACCAAGAAGCTCATTGGTGA
GGGCGCGATGTTGAAATCGCACCAGAACCGAGGTGGCCCACCGGGGTCCT
CGTTCGACAAGCCCGACCCCTACGGCAGCAGCAGCAGCGGCCTTGGCGGC
CTCGGCGGTCTCGGCGGGGGGGGCGCCGGCAAATCATCGTCGCCCTTCGA
TGGTCTCGGGGCGGGGCTCGGCGGCCTTGGAGCGATGTTGAAATCGCACC
AGAACCGAGGTGGCCCACCGGGGTCCTCGTTCGACAAGCCCGACCCCTAC
GGCAGCAGCAGCAGCGGCCTTGGCGGCCTCGGCGGTCTCGGCGGGGGGGG
CGCCGGCAAATCATCGTCGCCCTTCGATGGTCTCGGGGCGGGGCTCGGCG
GCCTTGGA
back to top