mRNA_E-fasciculatus_F_contig1600.4117.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1600.4117.1
Unique NamemRNA_E-fasciculatus_F_contig1600.4117.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 5.020e-123
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 552
            MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.280e-92
Identity = 138/184 (75.00%), Postives = 161/184 (87.50%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 552
            MRKLKYHEQKLLKKVDFLQWKSDQNIREI+VLRRY +Q+R+DYVKYN++VG +T L A+LKTL ++D FR+KMT QLL KL ++G+I+T+KSL K E  +VS+FCRRRLPVVMVR KMSETL EA T+IE GH+RVGP+ VTDPAFLVTR+MEDFVTWVD SKIKR I  Y DK+DDFDLLGEG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIKVLRRYHIQDREDYVKYNRLVGHVTSLAAKLKTLSSTDPFRVKMTSQLLSKLQSIGVIDTEKSLIKAEQLTVSAFCRRRLPVVMVRAKMSETLREAITFIESGHIRVGPNVVTDPAFLVTRTMEDFVTWVDSSKIKRTIAKYNDKLDDFDLLGEG 184
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA)

HSP 1 Score: 275 bits (703), Expect = 3.330e-90
Identity = 136/182 (74.73%), Postives = 158/182 (86.81%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 546
            MR+L++HEQKLLKKVDFLQWKSDQNIREI++LRRY +Q+R+DYVKYNKI G ITKLTA+LK L   DEFRIKMT+ LL KL+ MG+I TKKSL++ ET + S+FCRRRLPVVMVR+KM+ETL EA T+IEQGHVRVGP  VTDP FLVTRS EDF+TWVD SKIKRA+  Y DK+DDFDLLG
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK)

HSP 1 Score: 275 bits (702), Expect = 4.720e-90
Identity = 135/182 (74.18%), Postives = 157/182 (86.26%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 546
            MRKLK+HEQKLLKKVDFLQWKSDQNIREI+++RRYL+Q+R+DY KYNKI G + KL A+L+ L  +D+FRIKMTE LLEKLF MG+IN+KKSL   E  +VS+FCRRRLPVVMVRLKMSET+ EA T+IE GHVRVGPH VTDPAFLV R+MEDF+TWVD SKIKR I  Y DK+DD+DLLG
Sbjct:    1 MRKLKHHEQKLLKKVDFLQWKSDQNIREIKIIRRYLLQDREDYTKYNKICGHMWKLVAKLRALPPTDQFRIKMTEDLLEKLFNMGVINSKKSLQLVEKVNVSAFCRRRLPVVMVRLKMSETIKEAITFIEHGHVRVGPHCVTDPAFLVPRAMEDFLTWVDSSKIKRTIMKYNDKLDDYDLLG 182
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: D8UBE0_VOLCA (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=D8UBE0_VOLCA)

HSP 1 Score: 260 bits (664), Expect = 2.660e-84
Identity = 128/181 (70.72%), Postives = 153/181 (84.53%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 543
            MR+LKYHEQKLLKKVDFL+WKSD N+RE+QVLRRY +Q+RDDY KYNKI G+ITKLT+ LK LD  D  RI++T+QLLEKL+ MG++ TKKSL + +  + ++FCRRRL VVMVRLKMSETL EA T+IEQGHVRVGP  VTDPAF VTR+MEDFVTWVD SK+KR +  Y DK+DD+DLL
Sbjct:    1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCRRRLAVVMVRLKMSETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: A8IEP3_CHLRE (Small nucleolar ribonucleoprotein U3 component n=4 Tax=Chlamydomonadales TaxID=3042 RepID=A8IEP3_CHLRE)

HSP 1 Score: 259 bits (662), Expect = 5.350e-84
Identity = 128/181 (70.72%), Postives = 153/181 (84.53%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 543
            MR+LK+HEQKLLKKVDFL+WKSD N+RE+QV+RRY +Q+RDDY KYNKI G++TKLT+ LK LDA D  R+++T+QLLEKL AMGII TKKSL + +    +SFCRRRL VVMVRLKM+ETL EA T+IEQGHVRVGP  VTDPAF VTR+MEDFVTWVD SK+KR +  Y DK+DD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKISGMVTKLTSMLKQLDAKDPARVELTDQLLEKLHAMGIIPTKKSLVQCDKLPTASFCRRRLAVVMVRLKMAETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: E1ZQC4_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQC4_CHLVA)

HSP 1 Score: 258 bits (659), Expect = 1.580e-83
Identity = 127/181 (70.17%), Postives = 151/181 (83.43%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 543
            MRKLK+HE KLL+KVDFLQWK++ N RE+QV+RRY +Q+RDDY KYNK+ G++TKL A LK LDA D  RI++T+QLL+KL  MG+I TKKSL + E  S +SFCRRRL V+MVRLKMSETL EA T+IEQGHVRVGP  VTDPAFLVTRSMEDFVTWVD SKIKR +  Y DK+DDFD++
Sbjct:    1 MRKLKHHEHKLLRKVDFLQWKNEHNQRELQVMRRYHIQDRDDYSKYNKVCGMVTKLVATLKRLDARDSTRIELTDQLLDKLHNMGVITTKKSLVQLEKLSTASFCRRRLSVIMVRLKMSETLREACTFIEQGHVRVGPDTVTDPAFLVTRSMEDFVTWVDTSKIKRKVLRYNDKLDDFDIM 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: A0A7S1X290_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X290_9CHLO)

HSP 1 Score: 257 bits (656), Expect = 4.350e-83
Identity = 126/181 (69.61%), Postives = 154/181 (85.08%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 543
            MR+LK+HEQKLLKKV+FLQWKS+ N+RE+QV+RRY +QNRDDY  YNKI G +TKLTA L+ LD+ D  RI++T++LL+KL+ MG+++TKKSL + E  S +SFCRRRL VVMVRLKMSETL EA T+IEQGHVRVGP+ VTDPAFLVTR+ EDFVTWVD SKIKR +  Y DK+DD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVNFLQWKSEHNMREVQVMRRYHIQNRDDYKSYNKICGHVTKLTAVLRKLDSRDPVRIELTDKLLDKLYNMGVLSTKKSLLQVEKISTASFCRRRLAVVMVRLKMSETLKEAVTFIEQGHVRVGPNTVTDPAFLVTRNFEDFVTWVDTSKIKRKVMKYNDKLDDYDLL 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: A0A250X5I3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X5I3_9CHLO)

HSP 1 Score: 256 bits (655), Expect = 6.170e-83
Identity = 126/182 (69.23%), Postives = 156/182 (85.71%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 546
            MR+LK+HE+KLLKKVDFL+WK++ N+RE+QV+RRY +Q+RDDY KYNKIVGLITKLT+ LK LDA D  RI++T+QLLEKLF+MG++ TKKSL +TE  +VS+FCRRRL VVM+RLKM+ET+ EA T+IEQGHVRVG   VT+PAF VT +MEDFVTWVD SKIKR +  Y DK+DD+DLL 
Sbjct:    1 MRQLKFHEKKLLKKVDFLKWKNEDNLRELQVMRRYHIQDRDDYKKYNKIVGLITKLTSVLKQLDAKDTARIELTDQLLEKLFSMGVVPTKKSLVQTEKLAVSAFCRRRLSVVMMRLKMAETMKEAVTFIEQGHVRVGTETVTNPAFHVTTNMEDFVTWVDTSKIKRKVLMYNDKLDDYDLLN 182
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Match: A0A2P6VLZ6_9CHLO (U3 small nucleolar ribonucleo IMP3 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLZ6_9CHLO)

HSP 1 Score: 256 bits (654), Expect = 9.050e-83
Identity = 123/181 (67.96%), Postives = 153/181 (84.53%), Query Frame = 1 
Query:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 543
            MR+LK+HE KLLKKVDFLQWK++ N+RE+QV+RRY +Q+RDDY KYNK+ G++T+LTA LK LDA D  R ++T+QLL KL+ MG+I TKKSL + E  S +SFCRRRL VVMVRLKMSETL EA T+IEQGH+RVGP  +TDPAFLVTR+MEDFVTWVD S+I+R I+ Y DK+DD++LL
Sbjct:    1 MRQLKHHEHKLLKKVDFLQWKNEHNLREVQVMRRYHIQDRDDYKKYNKLCGMVTRLTATLKKLDARDTTRTELTDQLLNKLYGMGVITTKKSLVQLEKLSTASFCRRRLSVVMVRLKMSETLKEACTFIEQGHIRVGPDTITDPAFLVTRNMEDFVTWVDTSRIRRKIERYNDKLDDYELL 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1600.4117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ94_ECTSI5.020e-123100.00Small nucleolar ribonucleoprotein U3 component n=2... [more]
A0A836CN51_9STRA1.280e-9275.00Small nucleolar ribonucleoprotein U3 component n=1... [more]
W7TBD6_9STRA3.330e-9074.73Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae Ta... [more]
A0A6S9JYI8_HETAK4.720e-9074.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8UBE0_VOLCA2.660e-8470.72Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A8IEP3_CHLRE5.350e-8470.72Small nucleolar ribonucleoprotein U3 component n=4... [more]
E1ZQC4_CHLVA1.580e-8370.17Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S1X290_9CHLO4.350e-8369.61Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A250X5I3_9CHLO6.170e-8369.23Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A2P6VLZ6_9CHLO9.050e-8367.96U3 small nucleolar ribonucleo IMP3 n=1 Tax=Micract... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1600contigE-fasciculatus_F_contig1600:7165..10745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score361.3
Seed ortholog evalue2.7e-97
Seed eggNOG ortholog2880.D7FQ94
Preferred nameIMP3
KEGG koko:K14560
KEGG Pathwayko03008,map03008
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030532,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG0522@1,KOG4655@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S4/S9, N-terminal
Ec32 orthologEc-01_006990.1
Exons5
Model size900
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1600.4117.1prot_E-fasciculatus_F_contig1600.4117.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1600 7510..10745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.01005-UTR-E-fasciculatus_F_contig1600:7164..75091622928070.01005-UTR-E-fasciculatus_F_contig1600:7164..7509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1600 7165..7509 -
1695995810.766604-UTR-E-fasciculatus_F_contig1600:7164..75091695995810.766604-UTR-E-fasciculatus_F_contig1600:7164..7509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1600 7165..7509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.0236645-CDS-E-fasciculatus_F_contig1600:7509..76291622928070.0236645-CDS-E-fasciculatus_F_contig1600:7509..7629Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 7510..7629 -
1695995810.7791698-CDS-E-fasciculatus_F_contig1600:7509..76291695995810.7791698-CDS-E-fasciculatus_F_contig1600:7509..7629Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 7510..7629 -
1622928070.0421088-CDS-E-fasciculatus_F_contig1600:8571..86891622928070.0421088-CDS-E-fasciculatus_F_contig1600:8571..8689Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 8572..8689 -
1695995810.7895918-CDS-E-fasciculatus_F_contig1600:8571..86891695995810.7895918-CDS-E-fasciculatus_F_contig1600:8571..8689Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 8572..8689 -
1622928070.0578737-CDS-E-fasciculatus_F_contig1600:9552..96861622928070.0578737-CDS-E-fasciculatus_F_contig1600:9552..9686Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 9553..9686 -
1695995810.8006022-CDS-E-fasciculatus_F_contig1600:9552..96861695995810.8006022-CDS-E-fasciculatus_F_contig1600:9552..9686Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 9553..9686 -
1622928070.0792882-CDS-E-fasciculatus_F_contig1600:9978..100711622928070.0792882-CDS-E-fasciculatus_F_contig1600:9978..10071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 9979..10071 -
1695995810.808959-CDS-E-fasciculatus_F_contig1600:9978..100711695995810.808959-CDS-E-fasciculatus_F_contig1600:9978..10071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 9979..10071 -
1622928070.0919478-CDS-E-fasciculatus_F_contig1600:10655..107451622928070.0919478-CDS-E-fasciculatus_F_contig1600:10655..10745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 10656..10745 -
1695995810.8171108-CDS-E-fasciculatus_F_contig1600:10655..107451695995810.8171108-CDS-E-fasciculatus_F_contig1600:10655..10745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 10656..10745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1600.4117.1

>prot_E-fasciculatus_F_contig1600.4117.1 ID=prot_E-fasciculatus_F_contig1600.4117.1|Name=mRNA_E-fasciculatus_F_contig1600.4117.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=185bp
MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIV
GLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETAS
VSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTR
SMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG*
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mRNA from alignment at E-fasciculatus_F_contig1600:7165..10745-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1600.4117.1 ID=mRNA_E-fasciculatus_F_contig1600.4117.1|Name=mRNA_E-fasciculatus_F_contig1600.4117.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3581bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1600:7165..10745- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGAAGCTGAAGTACCATGAGCAGAAGCTCTTGAAGAAGGTCGACTT
CTTGCAGTGGAAGAGCGACCAGAACATCCGCGAGATTCAGGTGTGGAGTG
TGGACGTGCGGATGTTAAAATTGACAGTCTTGTGGTGCTCTCACCGCAAA
AGTTGCCGGTGTGCCCCTGTTGTCATCTGCAGCAGCCAGCGTACGCGGCT
GCTCATATCAAAGCTCTGCTACCGCAGTACCCACTGCTGTCCCTCAACGC
TGTCGGTATGTGGGGGTTTACTTTCCCTCGCCCTTGCGATAGTAGAGCTG
GAGGAAACACACACCGAGGGACCAGATCTACGTAGATCTATGCTACAGCA
GTGCATGGTTTACACATGTTCATGGGAAATGCCCGTCTTCGGCAGTAGCT
GGACCTTGACTTTGAATCTGTGTTCTAGGAGTCTGTCGGAGACCAAAGGG
AGCATGGCGTGCATGCATTTTGGCTCGTTGCGTCCGCGGTATGTATCATC
TTTGTTGTTCCCCTCTCTCTCGCTCTCTCTACGCTGTCGCTGAAGGGTAC
ATCGGACGACGTGGTACGGCACGGTATGTACATGCATATGCATATGAGAA
TCATTAGTACAGAGGTTCCTGACCCTTGGGGTGTACCCTGTTTTGTCAAC
TCCCGTCGGTGCTTGTTTTCACAGGTCCTTCGAAGATATCTGGTGCAAAA
CAGAGACGACTACGTCAAGTACAACAAGATCGTCGGGCTCATCACGAAGC
TCACGGCCAGACTCAAGGTACAGCAGTATGCATAGATTGCGGCAAGAAAA
ACTGCCGGGCGTTGTGTGTTGCCAACCCGGCAAGACGTGACGTGTACAAA
TGTAATGGCCAGTCAATACAATTGTAGCTGAGAATACTAAAAAAACTGTG
ACGGTCTTCGTCGGGTTTTAGCCCCTTTCGCCGCGCCGCCATCTTGCCCC
AACGATTTCGTTCGACATGGTCATGGTGTGCGTGCTTCGCGATTTGTGCG
ATTAACCACCGGATGAAACGACCTTGGTTGGTTTACCCGCCACACCCCCG
TTCTGGTAGACCTTGGATGCGAGCGACGAATTCCGGATAAAGATGACTGA
ACAGCTGCTGGAAAAGCTGTTTGCGATGGGGATCATCAACACGAAGAAAA
GCCTGGCTAAGACGGAGACAGCCAGCGTGTCTTCTTTCTGCAGGTGACAC
CTTAAGGTCCTCAACCGCCCGATCTATTTCCCTCCGGCTTCGTAACCCGT
TCGATAACACCATGTGCTATAACTAGGGCAAAACGAGCCAAGCAGAGCCA
CGCGCCAATAGCCGACAGCACGTGATTGTTCGCTGCTGACGCACACGTTT
TTTTTGTGACACAGCACGAGCACCTCGGAATCTGAGGTTTCTTGTTTCGA
CGGGACAGACTTGGCTGAATGGGTTTGTCTATTTACGAAAGGGCTCCACG
ACGCTCTCGCGAGGCTCACCCCGCTGGCTTTGTCGTGGCGCTGAAGGAGA
CGTATAGTAGCTGGACTTGCAGAGTTGCCTTCGTGGAGCCTCGGAGAGAA
CCTTGTGGCTGTGGCGGGCAAGTGCTACAACAACAATGTAGACATGGGTT
GATTCTGGGAGCCTTCGGGACAGGCTCACCAACGCTCGATCGCGTGCGCA
AGCAGACACCAAGTGACGGGTTCTTTGTGTGGGTGTGGGGCGGTCATCGA
AGCGTGATACGTTTCGTTGAAAAAGTCGCGTCGAGTCCCTCTGGCCAGTT
GTCGCCATTCCGACCCCTCCCCGAAAACTTGGTGCGTATTCCTTGGCATG
CGTGCAACCCCCTCCCCCCTGGATATGTACTGCTGCCCTCCATCCTCCCT
GCCCTCAACGCCTCTGATGGTTGACGAGAGTTTGGTTCGCAGGACACATT
CTTAAAATCTGTAAAGGATTGATTCGGCAGAAATGTTCCTACGCTAAGGG
TTCGAAGTGCTTGCAGCTTGTATCTTGGTGCCAAGGAGCGTGCTGCTCAA
TGGTTTTGTACCTTCTCGAAATGTGCACGTACTCGTTGCTTGCTCTCCTC
CTGCAGACGACGATTACCGGTGGTGATGGTGAGACTCAAGATGTCCGAAA
CGCTCACGGAGGCTACGACTTACATCGAGCAGGGGCACGTTAGGGTGGGT
CCCCACGCCGTCACGGATCCAGCGGTGAGTGGGGAAAGACTTCCTGTCGA
GCGTGCGGGCCGACTTTACCATAGCGGTCGGTATCAATTGAACTGCGTGG
CGATCCGATCCGTGCTCAGATTGGTGTTGAGTTTATCTTGAACCGGACTG
CATGGGAAACGAAACACACTTGATTTCCACAACGTGCGCCGTTTTTGTGT
TGTGCATCGTCGAAACCTGACGAAATAAGTGCTGCCTCCAAAGGGACTGC
TCGGGACCAACCCGCACTGCTATGCCTAAAATGAAACAGCGTTCGTTTAT
TGAGACACGTCATGTTGCACAAATTTGACATGTTGCTGTTGTACCCCATA
TACTGTCGAGGCTGTATCAATCGCCTCTCTTCACTGTGCGGGATATCAGC
CGAATGCCACTACAAGACTACTTTCCAACCTGTGTGCTGCACGCCTAAGC
ATCTATGGATTTTGACTTGGTGCGTGTGTAGACCTCTAGGTAGAGTACAT
CACGTCCTGTACTGGGCGGATCGACTATTTAAGTTGGATCTGAACCCATG
GCAGAGTTGCGTGTCACATAGGAGTATTTTTTCTACGTACTCTGCAGCGG
AAGGTTGTAGGCACCACATTCAATGTTCATAGCGGGACCATTCGTGCTCT
GGTGCCCTTTCGTGGAATCGACAAGTACTCCTGCCAGAATTGTGGTCTTC
AATTTCGGTTCTAGTGCGTTCTTCGACACGTCAGGGTACATATACGTTCC
GCACAAAAGTAGGCTCAGCAGGGTGAACCGGCGACTTTTCGGCCACGGTA
GGGTGGAAAGGGTTTCCACCATCCCGATGGGCTGTTTCAACCTGAACAAC
CAAAGGGTGCACCCTGTTGTGTCAAGCCCCCCCCTCTTGTCTTGTCACCT
TCGGACAGCACCGTTACTGACCAGGACGCCCTCAATGCTGCCCCTTGCTT
TTGCCATGGCACACAGTTTCTGGTGACCAGAAGTATGGAAGACTTCGTGA
CTTGGGTGGATGGCTCAAAGATCAAGCGCGCCATCAAGACATACGAGGAC
AAAGTGGATGATTTCGATCTACTGGGGGAGGGGTAGTGTTGGTTGGAGCG
ACGCCTGATCACAAAACGTTGTTTTTGGCTTTTTAGGGCCTGCCTTGTAA
GAAATATTTTGAGGTCCTGAGTGATGTGATGTCTGATTGTATTTTTGTAT
TCACGCAAATTGACGGTGTTTCTTGACACCAAGTACACGTCAGGTGTTTT
GGTCATACTTGGCCGATAAATATTGAGCGTGTAGTCTGTGTTCGTGCAAG
TGACCGTGCATGCGCAGGTGCCGTTTTTACGTTTTTTACGTTTTTTCCGA
CGAGAACAATCGGGTGTGAAGTGTGAAGATGAGTGTTGACGCTGCAAACT
TGAAGGCAACCTACCCTCCATTGCCATCTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1600:7165..10745-

>mRNA_E-fasciculatus_F_contig1600.4117.1 ID=mRNA_E-fasciculatus_F_contig1600.4117.1|Name=mRNA_E-fasciculatus_F_contig1600.4117.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1600:7165..10745- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGAAGCTGAAGTACCATGAGCAGAAGCTCTTGAAGAAGGTCGACTT
CTTGCAGTGGAAGAGCGACCAGAACATCCGCGAGATTCAGATGAGGAAGC
TGAAGTACCATGAGCAGAAGCTCTTGAAGAAGGTCGACTTCTTGCAGTGG
AAGAGCGACCAGAACATCCGCGAGATTCAGGTCCTTCGAAGATATCTGGT
GCAAAACAGAGACGACTACGTCAAGTACAACAAGATCGTCGGGCTCATCA
CGAAGCTCACGGCCAGACTCAAGGTCCTTCGAAGATATCTGGTGCAAAAC
AGAGACGACTACGTCAAGTACAACAAGATCGTCGGGCTCATCACGAAGCT
CACGGCCAGACTCAAGACCTTGGATGCGAGCGACGAATTCCGGATAAAGA
TGACTGAACAGCTGCTGGAAAAGCTGTTTGCGATGGGGATCATCAACACG
AAGAAAAGCCTGGCTAAGACGGAGACAGCCAGCGTGTCTTCTTTCTGCAG
ACCTTGGATGCGAGCGACGAATTCCGGATAAAGATGACTGAACAGCTGCT
GGAAAAGCTGTTTGCGATGGGGATCATCAACACGAAGAAAAGCCTGGCTA
AGACGGAGACAGCCAGCGTGTCTTCTTTCTGCAGACGACGATTACCGGTG
GTGATGGTGAGACTCAAGATGTCCGAAACGCTCACGGAGGCTACGACTTA
CATCGAGCAGGGGCACGTTAGGGTGGGTCCCCACGCCGTCACGGATCCAG
CGACGACGATTACCGGTGGTGATGGTGAGACTCAAGATGTCCGAAACGCT
CACGGAGGCTACGACTTACATCGAGCAGGGGCACGTTAGGGTGGGTCCCC
ACGCCGTCACGGATCCAGCGTTTCTGGTGACCAGAAGTATGGAAGACTTC
GTGACTTGGGTGGATGGCTCAAAGATCAAGCGCGCCATCAAGACATACGA
GGACAAAGTGGATGATTTCGATCTACTGGGGGAGGGGTAGTTTCTGGTGA
CCAGAAGTATGGAAGACTTCGTGACTTGGGTGGATGGCTCAAAGATCAAG
CGCGCCATCAAGACATACGAGGACAAAGTGGATGATTTCGATCTACTGGG
GGAGGGGTAG
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