mRNA_E-fasciculatus_F_contig1600.4116.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1600.4116.1
Unique NamemRNA_E-fasciculatus_F_contig1600.4116.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1600.4116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1600contigE-fasciculatus_F_contig1600:6382..6772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size391
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1600.4116.1prot_E-fasciculatus_F_contig1600.4116.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1600 6436..6747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928069.6722846-UTR-E-fasciculatus_F_contig1600:6381..64351622928069.6722846-UTR-E-fasciculatus_F_contig1600:6381..6435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1600 6382..6435 +
1695995810.643419-UTR-E-fasciculatus_F_contig1600:6381..64351695995810.643419-UTR-E-fasciculatus_F_contig1600:6381..6435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1600 6382..6435 +
1622928069.6930578-UTR-E-fasciculatus_F_contig1600:6747..67721622928069.6930578-UTR-E-fasciculatus_F_contig1600:6747..6772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1600 6748..6772 +
1695995810.6685033-UTR-E-fasciculatus_F_contig1600:6747..67721695995810.6685033-UTR-E-fasciculatus_F_contig1600:6747..6772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1600 6748..6772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928069.6830606-CDS-E-fasciculatus_F_contig1600:6435..67471622928069.6830606-CDS-E-fasciculatus_F_contig1600:6435..6747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 6436..6747 +
1695995810.654862-CDS-E-fasciculatus_F_contig1600:6435..67471695995810.654862-CDS-E-fasciculatus_F_contig1600:6435..6747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1600 6436..6747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1600.4116.1

>prot_E-fasciculatus_F_contig1600.4116.1 ID=prot_E-fasciculatus_F_contig1600.4116.1|Name=mRNA_E-fasciculatus_F_contig1600.4116.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
MPAARPGLFRSTCVFPWSAMLPLFEWLFVRALNSFETLRFGRERGVVCEL
NSLATLRSRRERMMSWGDRSPTVPAAVPVAVPAAVALKRDRYGHVRASMC
VLN*
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mRNA from alignment at E-fasciculatus_F_contig1600:6382..6772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1600.4116.1 ID=mRNA_E-fasciculatus_F_contig1600.4116.1|Name=mRNA_E-fasciculatus_F_contig1600.4116.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=391bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1600:6382..6772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGAGTTGAAAGGCTCTTGGTTCTTGGTTGTTTGGACCAAATTGTGCTAA
TGTAATGCCCGCTGCTAGGCCCGGACTTTTTCGTTCAACTTGCGTGTTTC
CGTGGAGTGCGATGTTGCCCTTGTTTGAGTGGCTGTTTGTGCGTGCACTA
AACAGTTTTGAGACATTGAGGTTCGGACGTGAGAGAGGAGTTGTGTGTGA
GCTGAACAGTCTTGCGACATTGAGGTCCAGGCGTGAGAGAATGATGAGCT
GGGGAGACCGGAGCCCTACAGTACCAGCAGCAGTACCAGTAGCAGTACCA
GCAGCAGTGGCCTTAAAGAGGGACCGTTATGGGCATGTACGTGCGTCGAT
GTGTGTGTTGAATTGAAGTGAGGCCCAAAATAGGAGCGGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1600:6382..6772+

>mRNA_E-fasciculatus_F_contig1600.4116.1 ID=mRNA_E-fasciculatus_F_contig1600.4116.1|Name=mRNA_E-fasciculatus_F_contig1600.4116.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1600:6382..6772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCGCTGCTAGGCCCGGACTTTTTCGTTCAACTTGCGTGTTTCCGTG
GAGTGCGATGTTGCCCTTGTTTGAGTGGCTGTTTGTGCGTGCACTAAACA
GTTTTGAGACATTGAGGTTCGGACGTGAGAGAGGAGTTGTGTGTGAGCTG
AACAGTCTTGCGACATTGAGGTCCAGGCGTGAGAGAATGATGAGCTGGGG
AGACCGGAGCCCTACAGTACCAGCAGCAGTACCAGTAGCAGTACCAGCAG
CAGTGGCCTTAAAGAGGGACCGTTATGGGCATGTACGTGCGTCGATGTGT
GTGTTGAATTGAATGCCCGCTGCTAGGCCCGGACTTTTTCGTTCAACTTG
CGTGTTTCCGTGGAGTGCGATGTTGCCCTTGTTTGAGTGGCTGTTTGTGC
GTGCACTAAACAGTTTTGAGACATTGAGGTTCGGACGTGAGAGAGGAGTT
GTGTGTGAGCTGAACAGTCTTGCGACATTGAGGTCCAGGCGTGAGAGAAT
GATGAGCTGGGGAGACCGGAGCCCTACAGTACCAGCAGCAGTACCAGTAG
CAGTACCAGCAGCAGTGGCCTTAAAGAGGGACCGTTATGGGCATGTACGT
GCGTCGATGTGTGTGTTGAATTGA
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