mRNA_E-fasciculatus_F_contig160.4114.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig160.4114.1
Unique NamemRNA_E-fasciculatus_F_contig160.4114.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig160.4114.1 vs. uniprot
Match: D8LQU1_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.300e-23
Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 MSAEIRLERSREQNRQSSKKARIRRKGEEESLKDEIESLQVGQTASAWKIRLMRICAEAQAFYPSISQDC 210
            MSAEIRLERSREQN+QSSKKARIRRKGEEESLK EIESLQVGQ ASAW+I +  I AE     P++SQDC
Sbjct:    1 MSAEIRLERSREQNKQSSKKARIRRKGEEESLKHEIESLQVGQAASAWEIFVTPIHAEPVEGCPALSQDC 70
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig160.4114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQU1_ECTSI3.300e-2377.14BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig160contigE-fasciculatus_F_contig160:31760..31969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper domain protein
Ec32 orthologEc-24_002280.1
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928069.6331897-CDS-E-fasciculatus_F_contig160:31759..319691622928069.6331897-CDS-E-fasciculatus_F_contig160:31759..31969Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig160 31760..31969 -
1695995810.6332877-CDS-E-fasciculatus_F_contig160:31759..319691695995810.6332877-CDS-E-fasciculatus_F_contig160:31759..31969Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig160 31760..31969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig160.4114.1prot_E-fasciculatus_F_contig160.4114.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig160 31760..31969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig160.4114.1

>prot_E-fasciculatus_F_contig160.4114.1 ID=prot_E-fasciculatus_F_contig160.4114.1|Name=mRNA_E-fasciculatus_F_contig160.4114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=70bp
MSAEIRLERSREQNRQSSKKARIRRKGEEESLKDEIESLQVGQTASAWKI
RLMRICAEAQAFYPSISQDC
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mRNA from alignment at E-fasciculatus_F_contig160:31760..31969-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig160.4114.1 ID=mRNA_E-fasciculatus_F_contig160.4114.1|Name=mRNA_E-fasciculatus_F_contig160.4114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=210bp|location=Sequence derived from alignment at E-fasciculatus_F_contig160:31760..31969- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCGCTGAAATCCGTCTAGAGAGGAGTCGGGAGCAGAACAGGCAAAG
CTCGAAGAAAGCCCGGATACGCCGCAAAGGGGAGGAGGAGTCTCTCAAGG
ACGAAATCGAGAGCCTTCAGGTCGGTCAGACGGCGAGCGCTTGGAAAATA
CGCCTAATGCGCATTTGTGCAGAAGCTCAAGCATTTTATCCATCGATATC
GCAGGACTGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig160:31760..31969-

>mRNA_E-fasciculatus_F_contig160.4114.1 ID=mRNA_E-fasciculatus_F_contig160.4114.1|Name=mRNA_E-fasciculatus_F_contig160.4114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=420bp|location=Sequence derived from alignment at E-fasciculatus_F_contig160:31760..31969- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCGCTGAAATCCGTCTAGAGAGGAGTCGGGAGCAGAACAGGCAAAG
CTCGAAGAAAGCCCGGATACGCCGCAAAGGGGAGGAGGAGTCTCTCAAGG
ACGAAATCGAGAGCCTTCAGGTCGGTCAGACGGCGAGCGCTTGGAAAATA
CGCCTAATGCGCATTTGTGCAGAAGCTCAAGCATTTTATCCATCGATATC
GCAGGACTGTATGAGCGCTGAAATCCGTCTAGAGAGGAGTCGGGAGCAGA
ACAGGCAAAGCTCGAAGAAAGCCCGGATACGCCGCAAAGGGGAGGAGGAG
TCTCTCAAGGACGAAATCGAGAGCCTTCAGGTCGGTCAGACGGCGAGCGC
TTGGAAAATACGCCTAATGCGCATTTGTGCAGAAGCTCAAGCATTTTATC
CATCGATATCGCAGGACTGT
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