mRNA_E-fasciculatus_F_contig16.4110.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16.4110.1
Unique NamemRNA_E-fasciculatus_F_contig16.4110.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: TBA2_PELFA (Tubulin alpha-2 chain n=45 Tax=cellular organisms TaxID=131567 RepID=TBA2_PELFA)

HSP 1 Score: 180 bits (457), Expect = 1.460e-49
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 281
            TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY
Sbjct:  361 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 453
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BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: A0A7S0Q113_9EUKA (Tubulin alpha chain n=24 Tax=Eukaryota TaxID=2759 RepID=A0A7S0Q113_9EUKA)

HSP 1 Score: 177 bits (448), Expect = 3.040e-48
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 281
            TVVPGGDLARVQRAVCMV+NTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEED GEEY
Sbjct:  361 TVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDMGEEY 453
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BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: A0A6A3JM66_9STRA (Uncharacterized protein (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JM66_9STRA)

HSP 1 Score: 165 bits (418), Expect = 5.550e-48
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 281
            +VVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAE EGE+E+FGEEY
Sbjct:    7 SVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEAEGEDEEFGEEY 99
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BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: A0A067C433_SAPPC (Tubulin_C domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C433_SAPPC)

HSP 1 Score: 166 bits (421), Expect = 3.000e-47
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 281
            TVVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAF HWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAEGEGEEE+ GEEY
Sbjct:   94 TVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGEGEEEELGEEY 186
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BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: A0A7S2X5D0_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2X5D0_PROMC)

HSP 1 Score: 163 bits (413), Expect = 8.510e-47
Identity = 81/93 (87.10%), Postives = 89/93 (95.70%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 281
            TVVPGGDLA+VQRAVCM++N+TAIAE  SR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA+GE  +ED+GEEY
Sbjct:   39 TVVPGGDLAKVQRAVCMISNSTAIAEVFSRVDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADGEEGQEDYGEEY 131
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BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: A0A662YHN3_9STRA (Tubulin_C domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHN3_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.310e-45
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 281
            +VVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAEGEGE+E  GEEY
Sbjct:  128 SVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGEGEDEMLGEEY 220
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BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: A0A7S2RG20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG20_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.400e-45
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGE 275
            TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG E+ +G GEE DF E
Sbjct:   10 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMESTDGAGEE-DFDE 99
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BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: A0A6G0R1R0_9STRA (Tubulin_C domain-containing protein (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0R1R0_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.840e-45
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 281
            +VVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAEGE EE  FGEEY
Sbjct:   29 SVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGEDEE--FGEEY 119
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: A0A6G0SC45_9STRA (Tubulin_C domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A6G0SC45_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.900e-45
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 281
            +VVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAE + ++EDFGEEY
Sbjct:   61 SVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEADMKDEDFGEEY 153
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Match: A0A329STK5_9STRA (Tubulin alpha-2 chain n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329STK5_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.670e-45
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 3 
Query:    3 TVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 281
            TVVPGGDLARVQRAV M++NT+AIAE  SRIDHKFDLMYAKRAFVHW+VGEGMEEGEFSEAREDLAALEKDYEEV AETAEGEGE+E+FGEEY
Sbjct:  177 TVVPGGDLARVQRAVAMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWFVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGEGEDEEFGEEY 269
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16.4110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
TBA2_PELFA1.460e-49100.00Tubulin alpha-2 chain n=45 Tax=cellular organisms ... [more]
A0A7S0Q113_9EUKA3.040e-4897.85Tubulin alpha chain n=24 Tax=Eukaryota TaxID=2759 ... [more]
A0A6A3JM66_9STRA5.550e-4889.25Uncharacterized protein (Fragment) n=5 Tax=Phytoph... [more]
A0A067C433_SAPPC3.000e-4790.32Tubulin_C domain-containing protein n=1 Tax=Saprol... [more]
A0A7S2X5D0_PROMC8.510e-4787.10Hypothetical protein n=1 Tax=Prorocentrum micans T... [more]
A0A662YHN3_9STRA1.310e-4589.25Tubulin_C domain-containing protein (Fragment) n=1... [more]
A0A7S2RG20_9STRA1.400e-4592.31Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6G0R1R0_9STRA1.840e-4589.25Tubulin_C domain-containing protein (Fragment) n=4... [more]
A0A6G0SC45_9STRA1.900e-4587.10Tubulin_C domain-containing protein n=7 Tax=Perono... [more]
A0A329STK5_9STRA2.670e-4589.25Tubulin alpha-2 chain n=1 Tax=Phytophthora cactoru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16contigE-fasciculatus_F_contig16:57544..59328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size973
Cds size357
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16.4110.1prot_E-fasciculatus_F_contig16.4110.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16 58160..59328 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928068.9769273-UTR-E-fasciculatus_F_contig16:57543..581591622928068.9769273-UTR-E-fasciculatus_F_contig16:57543..58159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16 57544..58159 -
1695995810.2241514-UTR-E-fasciculatus_F_contig16:57543..581591695995810.2241514-UTR-E-fasciculatus_F_contig16:57543..58159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16 57544..58159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928068.9908452-CDS-E-fasciculatus_F_contig16:58159..584361622928068.9908452-CDS-E-fasciculatus_F_contig16:58159..58436Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 58160..58436 -
1695995810.241981-CDS-E-fasciculatus_F_contig16:58159..584361695995810.241981-CDS-E-fasciculatus_F_contig16:58159..58436Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 58160..58436 -
1622928069.0054908-CDS-E-fasciculatus_F_contig16:59248..593281622928069.0054908-CDS-E-fasciculatus_F_contig16:59248..59328Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 59249..59328 -
1695995810.2557166-CDS-E-fasciculatus_F_contig16:59248..593281695995810.2557166-CDS-E-fasciculatus_F_contig16:59248..59328Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 59249..59328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16.4110.1

>prot_E-fasciculatus_F_contig16.4110.1 ID=prot_E-fasciculatus_F_contig16.4110.1|Name=mRNA_E-fasciculatus_F_contig16.4110.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
RPSCPAATSPACSAPCAWWPTPPPSPRLCRASTTSSTSCTPSVPSCTGTW
VRAWRRESSPRPVRTWLPSRRTTKRSAPRPPRARARRRTSARSTNSKLIR
RRFPSEIVTTLFPTCGDD*
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mRNA from alignment at E-fasciculatus_F_contig16:57544..59328-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16.4110.1 ID=mRNA_E-fasciculatus_F_contig16.4110.1|Name=mRNA_E-fasciculatus_F_contig16.4110.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1785bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16:57544..59328- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACCGTCGTGCCCGGCGGCGACCTCGCCCGCGTGCAGCGCGCCGTGTGC
ATGGTGGCCAACACCACCGCCATCGCCGAGGTGCGTTTCTTGTTCGTTTT
CATCTCTGTGTGCGTTTTTTTTCTTTGTAGTGTGCGGTACTGATAAGGAC
CAGTATTATCGCTGTTCACGCAGACGATCTGCTGTGTCGTGTTGACCAGG
TCACACAGCAGCATGAACGCAGCTGTCAAGATTGTACAATCAAGACGACC
CCTCGACAATTGTCATTTTGATTGTGTGACCCCTGCAACTACCGTGTGCC
CTGTTTTTGTTTGCTTGGGTCAACACCGCATACATATGAGCAGATCGTAT
TTTGTTGATGTCCGTGTGATGCGCATGAGAACCGGTATTGCTTTTCACGC
AGACGATCTGGTGTATCGTGTTGACCATATCATATCGAAGCAGGAACATG
GTTGCAAAGATATCTTGACATCTTGGCGATCGTGTTCCTTCCTCGCGGTG
ATGTGGTCAGCATGACATGCCAGATGGGCTGCGTGACTAGTGACACCTGT
CAATCCTTGCTGGGTGATAAGTTGATATTTCATCGCAATCGATGGTTGTC
TGGCGTTTGTCATTGACGATGCATGGAGGGATGTAGAGAAGGTGAAAGTT
TTAGGTCACCGTCTCCTGGGCGGTGCCACCACGCTCTGTATTGAGACAAA
AACGTATGTTATGTTCATCCTCAGTATCCACGGCCGAATGTTGGTGCAAT
TGATTCATCTCTAGCGCAATTGATTCATCTCTAGCGTTTCTCCCCCGCCT
GCTTGTCTGCCAACCTATTTCCTTTGACCGCTGTGCCACCGCTTCTTGGT
TTTCCACATTGTGTACTCTACCACCGTACAACGGAACCGCAGGCTCTGTC
GCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGC
ACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCCGAGGCCCGT
GAGGACCTGGCTGCCCTCGAGAAGGACTACGAAGAGGTCGGCGCCGAGAC
CGCCGAGGGCGAGGGCGAGGAGGAGGACTTCGGCGAGGAGTACTAATTCG
AAATTGATTCGTCGGAGATTTCCATCGGAGATCGTCACCACACTATTCCC
CACCTGCGGAGATGATTAGTATCATCGACTACGACCGCGCTGCTAGTAGA
AGAGTGTTTGAGTCGGTGGCACTACAACTGTTGGTTGTGTGTTGGGGGCC
GATGGCGGTTGTGGAGGTAGAGTTCGGAGCCCTTGTTTTGGCTGTGGATT
GTGCCTAGCAGCTTAGCTTCGGTGACTTTGTTGAAGATGTGTGGTGGGGT
AATGGTGTCGTCGCTGTTTGTACCTTGGGCCTGGTTTCTCTTCGAGAGAG
GACTTGTATCGGGGGCAGAAAACAGCGAGTTGCATCGGGGAGGCAAATGC
GGTATTCGTTCCCATACCGCAATGTAAGTTTGTCAATACCAACAATGAAA
TGAAATACAAGTTCTCACACATACAGAGAAATTTATCTAGCGAAGTTTCA
GGCATGTGTGCAACGCTCGATACCGGGCCGGTACCTTGCAACATGGTTCA
TGAGTTTTAAGAGAGCACAATGTTGCAGGAACCATGAGGAGTGCAAAACT
TCGTACAATCTTGCGCAGAGCGAGCTACCTGTCGGCCTAAGGGGCAAGAC
ATGTTGCATTTCCCGAGTTGGGCAGGCACTTCTTTTGAACGCTCGCACAT
CTTGTCCATATCACGGCGCGGATGGCATAACACCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16:57544..59328-

>mRNA_E-fasciculatus_F_contig16.4110.1 ID=mRNA_E-fasciculatus_F_contig16.4110.1|Name=mRNA_E-fasciculatus_F_contig16.4110.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16:57544..59328- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACCGTCGTGCCCGGCGGCGACCTCGCCCGCGTGCAGCGCGCCGTGTGC
ATGGTGGCCAACACCACCGCCATCGCCGAGCGACCGTCGTGCCCGGCGGC
GACCTCGCCCGCGTGCAGCGCGCCGTGTGCATGGTGGCCAACACCACCGC
CATCGCCGAGGCTCTGTCGCGCATCGACCACAAGTTCGACCTCATGTACG
CCAAGCGTGCCTTCGTGCACTGGTACGTGGGTGAGGGCATGGAGGAGGGA
GAGTTCTCCGAGGCCCGTGAGGACCTGGCTGCCCTCGAGAAGGACTACGA
AGAGGTCGGCGCCGAGACCGCCGAGGGCGAGGGCGAGGAGGAGGACTTCG
GCGAGGAGTACTAATTCGAAATTGATTCGTCGGAGATTTCCATCGGAGAT
CGTCACCACACTATTCCCCACCTGCGGAGATGATTAGGCTCTGTCGCGCA
TCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGG
TACGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCCGAGGCCCGTGAGGA
CCTGGCTGCCCTCGAGAAGGACTACGAAGAGGTCGGCGCCGAGACCGCCG
AGGGCGAGGGCGAGGAGGAGGACTTCGGCGAGGAGTACTAATTCGAAATT
GATTCGTCGGAGATTTCCATCGGAGATCGTCACCACACTATTCCCCACCT
GCGGAGATGATTAG
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