mRNA_E-fasciculatus_F_contig16.4104.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16.4104.1
Unique NamemRNA_E-fasciculatus_F_contig16.4104.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16.4104.1 vs. uniprot
Match: A0A6H5KPH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.290e-37
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 2 
Query:  128 MPSRGGFTSRRSGDTMEGGNAQGGGMFGSSKGGPGSKRQRVAFWQLALAASALILLGLNVGAVLNSNFPSTSDKA-ERPSFGEVPHKMGNIGGA 406
            MPSRG F SRRSG+ MEGGNAQGGG+FGS++G PGSKRQRVA WQLALAAS LILLGLNVGAVL+SNFPS S KA ERPSFGEVPHK+G IGGA
Sbjct:    1 MPSRGSFISRRSGNMMEGGNAQGGGIFGSNEG-PGSKRQRVALWQLALAASVLILLGLNVGAVLSSNFPSASGKAAERPSFGEVPHKVGGIGGA 93
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BLAST of mRNA_E-fasciculatus_F_contig16.4104.1 vs. uniprot
Match: D8LPR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR2_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 6.960e-36
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  173 MEGGNAQGGGMFGSSKGGPGSKRQRVAFWQLALAASALILLGLNVGAVLNSNFPSTSDKA-ERPSFGEVPHKMGNIGGA 406
            MEGGNAQGGGMFGS KGGPGSKRQR+AFWQLALAASALILLGLNVGAVLNSNFPST DKA ERPSFGEVPHKMG++GGA
Sbjct:    2 MEGGNAQGGGMFGS-KGGPGSKRQRLAFWQLALAASALILLGLNVGAVLNSNFPSTPDKAAERPSFGEVPHKMGDVGGA 79
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16.4104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPH5_9PHAE3.290e-3782.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPR2_ECTSI6.960e-3692.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16contigE-fasciculatus_F_contig16:1321..5624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue4.1e-30
Seed eggNOG ortholog2880.D8LPR2
EggNOG OGs2CMCB@1,2QPYF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons3
Model size408
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16.4104.1prot_E-fasciculatus_F_contig16.4104.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16 1321..5497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928066.967763-CDS-E-fasciculatus_F_contig16:1320..13711622928066.967763-CDS-E-fasciculatus_F_contig16:1320..1371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 1321..1371 -
1695995809.2358754-CDS-E-fasciculatus_F_contig16:1320..13711695995809.2358754-CDS-E-fasciculatus_F_contig16:1320..1371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 1321..1371 -
1622928066.9791362-CDS-E-fasciculatus_F_contig16:2124..22551622928066.9791362-CDS-E-fasciculatus_F_contig16:2124..2255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 2125..2255 -
1695995809.245643-CDS-E-fasciculatus_F_contig16:2124..22551695995809.245643-CDS-E-fasciculatus_F_contig16:2124..2255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 2125..2255 -
1622928066.9938734-CDS-E-fasciculatus_F_contig16:5400..54971622928066.9938734-CDS-E-fasciculatus_F_contig16:5400..5497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 5401..5497 -
1695995809.2538679-CDS-E-fasciculatus_F_contig16:5400..54971695995809.2538679-CDS-E-fasciculatus_F_contig16:5400..5497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16 5401..5497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928067.0100656-UTR-E-fasciculatus_F_contig16:5497..56241622928067.0100656-UTR-E-fasciculatus_F_contig16:5497..5624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16 5498..5624 -
1695995809.2619405-UTR-E-fasciculatus_F_contig16:5497..56241695995809.2619405-UTR-E-fasciculatus_F_contig16:5497..5624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16 5498..5624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16.4104.1

>prot_E-fasciculatus_F_contig16.4104.1 ID=prot_E-fasciculatus_F_contig16.4104.1|Name=mRNA_E-fasciculatus_F_contig16.4104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=93bp
MPSRGGFTSRRSGDTMEGGNAQGGGMFGSSKGGPGSKRQRVAFWQLALAA
SALILLGLNVGAVLNSNFPSTSDKAERPSFGEVPHKMGNIGGA
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mRNA from alignment at E-fasciculatus_F_contig16:1321..5624-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16.4104.1 ID=mRNA_E-fasciculatus_F_contig16.4104.1|Name=mRNA_E-fasciculatus_F_contig16.4104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4304bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16:1321..5624- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TAGCAAGCACGCACGCACACGTTACAGCAACTTGCGGGAAAGGGAAAGCT
GCCCAACGCGCACAAGAGGGCCTGCCAAACACCCCGGGTGCCCGCGCGTT
GACTTGGGGTGGGGGAATTAGGGGGGAATGCCAAGTCGAGGAGGCTTCAC
TAGCCGTCGCTCGGGTGACACGATGGAGGGAGGGAATGCTCAGGGAGGGG
GCATGTTTGGCAGCAGCAAGGGAGGTAAGAGAGACGACGCGGATAAAGTA
AAAGAGAATCTATGCGTACAATAGGGGGAGCGGTTGTTTTCTCGCGGCTG
TCTCCCAGCGGATTGATTTTCCAACGGGAAAATATCAACCCAGAATCGAA
AATCGACAACAACCGACAACCTTTTTGTTGTTTCGTGTCACCCTGTGTTT
TTTCGAGGCGGCTCCCCGTCTCTTGCTGCATGATGAGAGAGGTGCAGGGC
AGAAGCTATGCAGGTAGTGAGAGCATCACACAGCACCCGGATTGTATTTC
CGCTACAATGAATCGGGACGTGCTCTCGCGTCAATATACCGTCCCTCTCT
GTACGCTAAGACGCAAAGCCATGCCCGGAATATTATTTGTTTTTGTTGCT
CGTTCTGGCGGCCACACCGCCCCGGCTTCCATGCATCGTACCACCAGTCG
GTCGGTTGTCTATCCTATCCTTGCAGCATCGTACACGCGTAGTTAAATCT
GCCGGTGAGAGCCGACTGCCGAACGCTGTTTGTCCATTCGCCTCGCTATA
GCTTCACCGCGCTGTCGACAACGAACGGTATTTTTTTTTTTGTTTCGTGG
AAGCCGCGCGCGGGGAATTTCGGAATTCAAGCGAACAGCCAAAACTCCTG
TGAACGAGTGGAATATGTATTTACATCAGAAGAGTGTGCATGCGTGTCGC
AGTACATCCATGAATGGTTGGCCGTGGATTTACCGGCTGGCCTGTTACGT
TATGTTCCGCACGAAGCAAACATTCACGCCTTGTCCGTTACCCTACAGCA
GTAGTATTCAATCCCACCTATCGTAGTATGTACAGCCGTAGAGGCGCTCT
CTCACAGCAGCAGTGTGTGGTGGTTCACGAGCACATTTTTCCCGGAGAGC
GAGCACGCTCACGGAAGGAAGCGGTTTCGACAACGTGTGATTGAGTTTCA
GTGTTCGATCCAGCAGCCGCGACTGCGTACGCTAGTATGCATAGCGGGGC
GCACACCCTCATCACGTGATAAAGTGCTTCGCTGCCGCCTGTGGACAAAA
ACCTGGAATATACTAGACCAGCCTACCCCACATGGTCCCGACCGTAGCAG
TTGCAAAAATAACCTCACGAAATCAGGGTGATCACCCCCAACCCGCGCCG
TAAACCCGGGGGGACAGATCTCTCACGGCAAGGTCTTGTTGTTCTTTTGA
GAAATTAGCGAGGTAGCAAGCATTTTTGGTGGCAAGTGGTGCACAAGTTT
GCACGACGAGACGGGACCCTCGGTAAATATGATGTTGTTTGTTGCGAGGA
GGCCTTTCAGGAAACGGTTCTGGGGCGATAGAAGAACATTAACATTCCTA
CAACGCGCATGCATGTACACTGTACACACGCACTTGTCGTCCAGCGCACC
CGTCTCCAAGATGGTTGTGTCCAGTATCAGTAATCACGCGTTGCACACGG
TTGGAGACAGTCTACAGAGCTTTGCGACAGGAATCGTCTCTATGATAAAA
CCGATGTGCTTCGAAGGAGGTATTTCCTCTATTCCTCTCAAGCTCATTCA
CCATTCACGAATCACCGGTTGTTGTTTTGTTGTTGTATCTATACAAAAAC
GTCAGTTTTTTTGGCATGTATTTAATGTGAAGACAACAACAACAACAACA
TTGAGACATCCATGTGTGAAGAGTGCGGGGCGGCGGTGTGCAAGACATGA
ACGATCGTGTTTGTTGCTGATCCGCAGCAGCAACTACAGCAGTGTTTGGC
GCCTGCCTGCTGTGGGCGTGTGTGATGAATGTCGTTTGTTCGTGGTCGAG
CAACTCGGAATTAAATGCGCCTCAACCGCACGTGCAGATACGTCGACCAC
GGCGGTCGTGCTCTGTGCTGGCACCCCCCCCCCCACACACACACCTAGAA
GAGGATTCGCCGCCGTATGCATATGCCCTAGATTACTACGCCAGCCATAA
AGGTTCGATTTCCCCGGGACAGAAGAGAATCACCGCCTTGCAGTAATTTT
ATATCACTTCTTCAAAGAGGCGAAGCAGATGTATCGATTGCTTGATTGCC
TGGACATGTACCCCCCCCCCTCTGTTCCGGCGACTGGTGCGCCCCCGGGC
ACCACCCTTCGGCATGCCGCGCACTGCTGCAACTTGGAATATGTTTTGAA
GTCGTGGTAGTTGCGGTGCGAACAGCGGCCAGGCAGTCGCGTCCCCCACC
GAAGCCCAGCCAACTATTGTGCGATACTCCCCCACCGAAGCCCAGCCAAC
TATTGTGCGATACTACATACATCATTGTTGTGTTAATGTATTTCTTAGAA
GTACGTTTTTTGTGCTGGCTGTTGTGCAGCCCGACCCCTGTGCAGCGGCA
CATGTGCAGATGCATACCGCCAGTTGCTGTGGCACATGGGCATTCATGTT
CATCTAACATTTGTTGGTGTGAACCCGCAACAGAACGCGAAGGGTTAACA
GCTTCTTCCTTTTTAAAGAAAAAATACAAGTACAAACACCGAAAGACTAC
AATACCCGTTCGAGATAAAAGCCACAGTCTTCTTCCTTTTGTTTTTCTGA
ATATGGCACAGCGGATCTTTTTCCCAGGGAACAGCATGAAAAGAAAGATT
ATCCGCTTGTATTACAGCGACAATACCCCGTGCGAAGGAGGAAACGGACA
CCTTGCTTCTCGCCGCGGTCGCGGAAGACGACAAGTCGAGGAAAGGTGTC
GTCCTTCGCTCTTCCGCCGTTCACTCCAGTCGATAGACCGGGGTGTCATG
CATACTCGTCCTACTGGAATTACTTGTAGAACAATTTTCTGGTACAAAAG
ATTATTTCCCCTACGACATCTATCTATGTTAAATTGATCCGGCAGCCTGG
CGTCTCGAGTGGAATCAATGCTCACGACGGTTGACCTGGAAATGAGCCAC
CCTGACACGGGGAGGGACGGCGTCCCTTCCTCGGCGAACGAACGCGGTTA
CGTATGCATACGTGGTGCTAGGCGCCCTCCCGTCCTACGCACACGTATCT
CCCGTTTTTGCTGCTCTTGCCCCTTCGTCCCCACCGGCGTTGGCTCAGGC
GGCGCTACGACGTTGCTTGTTACCGCTCCGCGATACAGCTTCACTTACAC
GACAACTTTGGTCCTCTAATATAGCTAAAATGGTGCTGGTTGTTGTGTGC
GTTCTCTCTGTCGTTCAAGGGCCGGGTTCGAAGCGGCAAAGGGTCGCGTT
CTGGCAGCTGGCGCTCGCGGCGTCGGCGTTGATCCTCTTGGGATTGAATG
TCGGCGCCGTGCTGAACTCCAACTTTCCTTCGACGTCGGATAAGGCTGAG
GTGCGTACGCTAGTAGCAGCAGTGGCAGCAGCAGCAGCTGCAGGTATTGT
TCCTTGTGTTCCTTTGTGTATCGTCGCGTACACACCAGCCAATGGGACTA
GAAACGCCATTGGAACGTCTGCTGTGTTGTGTGTCTGCCGCTCGGCGCCT
CTCTCACTTTTCTCATTCCTCCGACGAAAGTTCGGGGAGTTGGCCTGGAG
ATCCCTTTTTAACCCCCCGTCCCAACACAATCGGGAGGTTAAGCGAGTCT
GTCGTCAGTCCCTTTGGTTTTGGGCGCACGAATACCGCCGCGTTGTACAA
GGCAAAATATCTCGTAATGGGCCCTAGGTCGGCTCCTAAGTCTCTTGATT
GTAAGAGTTTCGACAGCCGAGCTTGGACAGCCAACCGGCCGTCGGTGCCT
TCCACGGAGACCTCTAGGCTCTGAGGCCCTTCGACAGGGTGATATGCTCC
ACACCTTCAAGATACTTTTGGTGTTGATTCCCGCTGTTGTATTGATGCGA
GCGAGATCATTAGTCTGACGACTACGGCATGCACGGCTATGAGTACACCC
CCCCCCCGCCCCCCTCACGATTTTGTTTTGCACCGTATGCATTGTGTTGT
TTAGCTTTTCCTGAGAGAGTCTCTTGACGCACAACTTTTCTTTGACCCCA
CTTCGCTAAAGCATTGTGTTGTTTAGCTTTTCCCGAGAGAGTCTATTGAC
GCTCAACTTTTCTTTGACCCCACTTCGAAAAACATCTACTGCAACTGCTG
CAGCGACCATCGTTCGGCGAGGTCCCTCACAAGATGGGGAACATCGGTGG
CGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16:1321..5624-

>mRNA_E-fasciculatus_F_contig16.4104.1 ID=mRNA_E-fasciculatus_F_contig16.4104.1|Name=mRNA_E-fasciculatus_F_contig16.4104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16:1321..5624- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAAGTCGAGGAGGCTTCACTAGCCGTCGCTCGGGTGACACGATGGA
GGGAGGGAATGCTCAGGGAGGGGGCATGTTTGGCAGCAGCAAGGGAGATG
CCAAGTCGAGGAGGCTTCACTAGCCGTCGCTCGGGTGACACGATGGAGGG
AGGGAATGCTCAGGGAGGGGGCATGTTTGGCAGCAGCAAGGGAGGGCCGG
GTTCGAAGCGGCAAAGGGTCGCGTTCTGGCAGCTGGCGCTCGCGGCGTCG
GCGTTGATCCTCTTGGGATTGAATGTCGGCGCCGTGCTGAACTCCAACTT
TCCTTCGACGTCGGATAAGGCTGAGGGCCGGGTTCGAAGCGGCAAAGGGT
CGCGTTCTGGCAGCTGGCGCTCGCGGCGTCGGCGTTGATCCTCTTGGGAT
TGAATGTCGGCGCCGTGCTGAACTCCAACTTTCCTTCGACGTCGGATAAG
GCTGAGCGACCATCGTTCGGCGAGGTCCCTCACAAGATGGGGAACATCGG
TGGCGCCCGACCATCGTTCGGCGAGGTCCCTCACAAGATGGGGAACATCG
GTGGCGCC
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