mRNA_E-fasciculatus_F_contig15998.4103.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15998.4103.1
Unique NamemRNA_E-fasciculatus_F_contig15998.4103.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15998.4103.1 vs. uniprot
Match: D8LHX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX6_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.440e-41
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:  121 TDVRTSELGEHGRITPVQAGFGNREAVQQSPDEGGSRCRVRSRLTPSLPSKAGAMWYSVPVPVTRGFETLFTFQV 345
            TDVRTSELGEH RITPVQAGFGNREAVQQSPD GGSRCRVRSRLTPSLPSKAGAMWYS+PVPVTRGFETLFTFQ+
Sbjct:    2 TDVRTSELGEHSRITPVQAGFGNREAVQQSPDAGGSRCRVRSRLTPSLPSKAGAMWYSLPVPVTRGFETLFTFQI 76
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BLAST of mRNA_E-fasciculatus_F_contig15998.4103.1 vs. uniprot
Match: A0A6H5L892_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L892_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.590e-29
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:  172 QAGFGNREAVQQSPDEGGSRCRVRSRLTPSLPSKAGAMWYSVPVPVTRGFETLFTFQV 345
            QAGFGNREAVQQSPD  GSRCRVRSRLTPSLPSKAGAMWYS+PVPVTRGFETLFTFQ+
Sbjct:   11 QAGFGNREAVQQSPDARGSRCRVRSRLTPSLPSKAGAMWYSLPVPVTRGFETLFTFQI 68
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BLAST of mRNA_E-fasciculatus_F_contig15998.4103.1 vs. uniprot
Match: A0A7S2CPB0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPB0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.450e-13
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  127 VRTSELGEHGRITPVQAGFGNREAVQQSPDEGGSRCRVRSRLTPSLPSKAGAMWYSVPVPVTRGFETLFTFQV 345
            V T + G+   I    A FG+R+  +  P     RC VR RL PS PS+AG+MWY  P+P+ +GF+TLFTFQV
Sbjct:   24 VETDDYGDSRDIPTSSAVFGHRDNFRPHPR---GRCPVRVRLNPSRPSRAGSMWYHTPIPINKGFQTLFTFQV 93
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BLAST of mRNA_E-fasciculatus_F_contig15998.4103.1 vs. uniprot
Match: A0A662XBH3_9STRA (Protein kinase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBH3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.390e-9
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:   28 ELEYGNVHGDADQLEGSLDTVTREVGEEVVTTDVRTSELGEHG---RITPVQAGFGNREAVQQSPDEGGSRCRVRSRLTPSLPSKAGAMWYSVPVPVTRGFETLFTFQV 345
            +  Y    G  D  E SL+ V   V E++  T + T E   H    RI    A  G+R+  + S +    RC VR RLT S P +  ++WY+  +PV RGFET FTFQ+
Sbjct: 1053 QAAYSTRAGADDTREASLEVV---VTEQLEATRLETRETENHSTSARIAVESAMLGHRDVFEASEET--LRCPVRLRLTASQPRQVSSVWYAQRLPVLRGFETRFTFQI 1156
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BLAST of mRNA_E-fasciculatus_F_contig15998.4103.1 vs. uniprot
Match: A0A7S2FHR0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHR0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.450e-7
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  226 SRCRVRSRLTPSLPSKAGAMWYSVPVPVTRGFETLFTFQV 345
            SRC VR RLTPS  ++AG++WY VP+   +GF+T FTFQ+
Sbjct:   15 SRCPVRVRLTPSKSTRAGSIWYHVPLATNKGFQTTFTFQI 54
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BLAST of mRNA_E-fasciculatus_F_contig15998.4103.1 vs. uniprot
Match: B5YP85_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YP85_THAPS)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  226 SRCRVRSRLTPSLPSKAGAMWYSVPVPVTRGFETLFTFQV 345
            + CR R RLTPS PSKAG++WY   VPV RGFET F++Q+
Sbjct:  106 TECRNRLRLTPSHPSKAGSVWYESRVPVLRGFETTFSWQI 145
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BLAST of mRNA_E-fasciculatus_F_contig15998.4103.1 vs. uniprot
Match: A0A835YPM4_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPM4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.630e-7
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:  244 SRLTPSLPSKAGAMWYSVPVPVTRGFETLFTFQ 342
            ++ +PSLP+KAGA+WYSVP+PV RGFET FTFQ
Sbjct:   69 AQASPSLPNKAGAIWYSVPLPVLRGFETQFTFQ 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15998.4103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHX6_ECTSI1.440e-4194.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L892_9PHAE1.590e-2993.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2CPB0_9STRA8.450e-1347.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A662XBH3_9STRA2.390e-937.61Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A7S2FHR0_9STRA1.450e-757.50Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
B5YP85_THAPS1.620e-762.50Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A835YPM4_9STRA1.630e-772.73Concanavalin A-like lectin/glucanase domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15998contigE-fasciculatus_F_contig15998:1717..2735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue5.8e-34
Seed eggNOG ortholog2880.D8LHX6
EggNOG free text desc.Legume lectin domain
EggNOG OGs2CMVS@1,2QS8X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928066.4073224-CDS-E-fasciculatus_F_contig15998:1716..18901622928066.4073224-CDS-E-fasciculatus_F_contig15998:1716..1890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15998 1717..1890 +
1695995809.2145526-CDS-E-fasciculatus_F_contig15998:1716..18901695995809.2145526-CDS-E-fasciculatus_F_contig15998:1716..1890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15998 1717..1890 +
1622928066.4201746-CDS-E-fasciculatus_F_contig15998:2564..27351622928066.4201746-CDS-E-fasciculatus_F_contig15998:2564..2735Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15998 2565..2735 +
1695995809.227012-CDS-E-fasciculatus_F_contig15998:2564..27351695995809.227012-CDS-E-fasciculatus_F_contig15998:2564..2735Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15998 2565..2735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15998.4103.1prot_E-fasciculatus_F_contig15998.4103.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15998 1717..2735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15998.4103.1

>prot_E-fasciculatus_F_contig15998.4103.1 ID=prot_E-fasciculatus_F_contig15998.4103.1|Name=mRNA_E-fasciculatus_F_contig15998.4103.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
GTTACANITELEYGNVHGDADQLEGSLDTVTREVGEEVVTTDVRTSELGE
HGRITPVQAGFGNREAVQQSPDEGGSRCRVRSRLTPSLPSKAGAMWYSVP
VPVTRGFETLFTFQV
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mRNA from alignment at E-fasciculatus_F_contig15998:1717..2735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15998.4103.1 ID=mRNA_E-fasciculatus_F_contig15998.4103.1|Name=mRNA_E-fasciculatus_F_contig15998.4103.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1019bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15998:1717..2735+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCACAACCGCGTGCGCCAACATCACGGAGCTGGAGTACGGCAACGTCCA
TGGCGATGCCGATCAGCTGGAAGGTTCGCTAGACACCGTGACGAGAGAGG
TGGGGGAGGAGGTCGTCACGACGGACGTCAGGACAAGCGAGCTAGGAGAA
CACGGCCGAATCACGCCTGTGCAGGTACGTGCCGCCAGCAGTAACTATTG
TAGTCGTAGAGACAAAACCAAATACCGCGGCATCTCACTCACCCACCCAC
CCAATCACAACCTATGCGTCGTCTCCCATCAACCGCAATATGTTCTGGTG
GGAACGGTCCTGTTCTCTCTACATCGGTAAGTGCACAGCACTGCTGTTAT
AGCTCTAGCAGCATGCCGGTCATGTAGGCATAACGAACAGCCTGCAAACT
CATCGGCCTCGGTCACACTGGATGTTTGTTGGGACTAAAGCTATCGCTTC
ATCGAGACTGTCTGACCTCGTGCATGTTTTTTGGGTGTTGGTGACTATGC
TTGCGGTCAAGATGCGAGACCGCAAGAAATATCATAGCGCTCGCCATGTC
TCGACAAATACATGTCTTTGCCTGTGGAACTCCTGGGGGGCTCGCCCTTC
CCTTCCGACAAGGCGTCGATCACCGCAACCTTGTGTTCATTACAAACCAC
AAGCGTACAGGAATCATAGAAAGCTTGATGGTTCCTGCTGAAGTTGGCAA
TGTTTATGTAGAGACTCTACTTCCACGGACACCTTCCCTTGTGTATCGCA
TACGTACGTGCACGCACCCCTTCGTATCTACAGCCGTCCTCCGACTGTTG
CAACACCAAGGGCCGCTTCCTTCGTGCGTGTTTTTTCGCGTCGAGCAGGC
GGGCTTTGGCAACCGTGAGGCCGTGCAGCAATCCCCGGACGAAGGAGGCA
GCCGCTGCCGCGTAAGGTCTCGCCTCACGCCGTCTTTGCCGTCAAAGGCA
GGGGCGATGTGGTACTCGGTGCCCGTGCCCGTAACGCGCGGCTTTGAGAC
CCTCTTCACATTTCAGGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15998:1717..2735+

>mRNA_E-fasciculatus_F_contig15998.4103.1 ID=mRNA_E-fasciculatus_F_contig15998.4103.1|Name=mRNA_E-fasciculatus_F_contig15998.4103.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15998:1717..2735+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCACAACCGCGTGCGCCAACATCACGGAGCTGGAGTACGGCAACGTCCA
TGGCGATGCCGATCAGCTGGAAGGTTCGCTAGACACCGTGACGAGAGAGG
TGGGGGAGGAGGTCGTCACGACGGACGTCAGGACAAGCGAGCTAGGAGAA
CACGGCCGAATCACGCCTGTGCAGGGCACAACCGCGTGCGCCAACATCAC
GGAGCTGGAGTACGGCAACGTCCATGGCGATGCCGATCAGCTGGAAGGTT
CGCTAGACACCGTGACGAGAGAGGTGGGGGAGGAGGTCGTCACGACGGAC
GTCAGGACAAGCGAGCTAGGAGAACACGGCCGAATCACGCCTGTGCAGGC
GGGCTTTGGCAACCGTGAGGCCGTGCAGCAATCCCCGGACGAAGGAGGCA
GCCGCTGCCGCGTAAGGTCTCGCCTCACGCCGTCTTTGCCGTCAAAGGCA
GGGGCGATGTGGTACTCGGTGCCCGTGCCCGTAACGCGCGGCTTTGAGAC
CCTCTTCACATTTCAGGTCGCGGGCTTTGGCAACCGTGAGGCCGTGCAGC
AATCCCCGGACGAAGGAGGCAGCCGCTGCCGCGTAAGGTCTCGCCTCACG
CCGTCTTTGCCGTCAAAGGCAGGGGCGATGTGGTACTCGGTGCCCGTGCC
CGTAACGCGCGGCTTTGAGACCCTCTTCACATTTCAGGTC
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