mRNA_E-fasciculatus_F_contig1599.4100.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1599.4100.1 vs. uniprot
Match: D8LTM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM0_ECTSI) HSP 1 Score: 1061 bits (2744), Expect = 0.000e+0 Identity = 754/1004 (75.10%), Postives = 780/1004 (77.69%), Query Frame = 1
Query: 142 MPAPGFAALFEVAALSAGLTVAGIVGSRFVVRWHQCSGNADLSAAVSGLAAALLTLFFCLYGLAYWFNGIGGYDCLAFSTVMGASLSASNALAFIHLFILSNSMHRANSRWKHFRWLGVIIVVFHWVALVALEGTRTAGKEERGGCAGESRCVTDVDSLALTVKWVAQLLNQLFQTVAFLVPLPRPATGAANDVRLFSGGLKATGSCRKCLGIPVWQTIISEGLSLVMTITVAGIALAKAKGGVDSTPMFAVEVLDNIVNLAAIFYAVHARPKFFHPRPKSLSQLLDSASSGNTSSSLMGSFGGNVPXXXXXXXXXXXXXXAYRGRRRSESSISADGRGYAEGGSGRGDIGGLRGSGYGNSSNVGGRLPRPHSIGVTSSTPSFSSFHASSLQRRYSSGPIRRLPPVVDMSPESSGHGSPSRSSFNSRGQSPPPAAPSSNLPPKSEPPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASARTPGVAEVSPSSSRGTPYPARARGAAEKGSGSGRHGRPVGALYFSSRATKSMRRTPGSYTTGTASGNADGAVVNTGIAFTRGTPIRSMSARAAGAKHDDSISAVRSASTASVTXXXXXXXXXXXTAAERIPSRCSSISTMPAAAPELASDDREHDAAAAATARLGIPDAVVTSAPWKWHQQPGLAKLQRPFQSTNNWASSHLMKVALATDASSGSFSAVSSETTSSTSPERHAEAHKKMATETPDGVRIAAXXXXXXXAHTVVWPLPLNASGRASPPPGGRRHARLSARSLASLPSAAQGRTEKKEARRTGSGSRRKWHHKKRAKRVTETQSGAPTTAASATVAPGGKPPSSFVWREVGLQGTGSNPEAPXXXXXXXXXSTTNEVGASAAETGKRPPLERRTSSSATSRSRYSXXXXXXXXXXXXCSSSFDGNDNQRGAPAATVRSPASFLEGNDSNG 3153
MPAPGFAALFEVAAL A LTVA +VGSRFVVRWHQCSG ADLSAAVSGLAAALLTLF CL GLAYWFNGIGGYDCLAFSTVMGASLSASNA+AFIHLFILSNSMHRANSRWKHFRWLGVII VFHWVALVALEGTRTAGKEE GGCAGESRCVTDVD LAL VKWVAQLLNQLFQTVAFLVPL P GAAN VRLFSGGLKATGSCRKCL I VWQTIISEGLSLVMTITVAGIALAKAKGG+ +TP+FAVEVLDNIVNLAAIFYAVH RRYSSGPIRRLPPVVDMSPESSGHGS SRSS NSRGQSPPPA PSSNLPPKSE PAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VAEVSPSSSRGTPY ARARGA EKGSGSGR+GRPVGALYF+SR TK+MRRTPGS ++GTA GNADGAVVNTGIA R P RSMSARAAGAKHD+S SAVRSASTAS+TXXXXXXXXXXXTAA+RIPSRCSSISTMPAAAPELA DDRE AA A T+RLGIPDAVVT+APWKWHQQPGL KLQRP +STNNWASS LMKVALATDASSGSFSAVSSETTSS+SPERHAEAHKKMATETPDGVRIAAXXXXXXX HTVVWPLPLNAS RASPP GG+RHARLSAR+LAS PSAA+ R EKKEARRTGSGSRR WH E GG+PPSSF+WREVGLQGT S+PEAP XXXXXXXX+TTN+VGA AAET KRPPLERRTSSSAT+RSRYS XXXXXXXXCSSSFDGNDNQRGAPAATVRSPASF EGNDSNG
Sbjct: 1 MPAPGFAALFEVAALGAALTVASVVGSRFVVRWHQCSGTADLSAAVSGLAAALLTLFLCLNGLAYWFNGIGGYDCLAFSTVMGASLSASNAMAFIHLFILSNSMHRANSRWKHFRWLGVIITVFHWVALVALEGTRTAGKEEHGGCAGESRCVTDVDGLALAVKWVAQLLNQLFQTVAFLVPLRMPVAGAANGVRLFSGGLKATGSCRKCLNISVWQTIISEGLSLVMTITVAGIALAKAKGGLGNTPVFAVEVLDNIVNLAAIFYAVH---------------------------------------------------------------------------------------------------------------------------RRYSSGPIRRLPPVVDMSPESSGHGSLSRSSSNSRGQSPPPAVPSSNLPPKSEAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------VAEVSPSSSRGTPYTARARGAVEKGSGSGRYGRPVGALYFASRTTKNMRRTPGSSSSGTALGNADGAVVNTGIAIARSMPPRSMSARAAGAKHDESTSAVRSASTASLTXXXXXXXXXXXTAADRIPSRCSSISTMPAAAPELAGDDREPGAAVA-TSRLGIPDAVVTAAPWKWHQQPGLTKLQRPLRSTNNWASSRLMKVALATDASSGSFSAVSSETTSSSSPERHAEAHKKMATETPDGVRIAAXXXXXXXXHTVVWPLPLNASSRASPPSGGKRHARLSARTLASSPSAAKVRAEKKEARRTGSGSRRNWHXXXXXXXXXEXXXXXXXXXXXXXXXXGGRPPSSFLWREVGLQGTCSHPEAPDXXXXXXXXATTNDVGAHAAETCKRPPLERRTSSSATNRSRYSAAAWXXXXXXXXCSSSFDGNDNQRGAPAATVRSPASFYEGNDSNG 863
BLAST of mRNA_E-fasciculatus_F_contig1599.4100.1 vs. uniprot
Match: A0A6H5JF49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF49_9PHAE) HSP 1 Score: 884 bits (2285), Expect = 2.110e-309 Identity = 646/943 (68.50%), Postives = 670/943 (71.05%), Query Frame = 1
Query: 325 GLAYWFNGIGGYDCLAFSTVMGASLSASNALAFIHLFILSNSMHRANSRWKHFRWLGVIIVVFHWVALVALEGTRTAGKEERGGCAGESRCVTDVDSLALTVKWVAQLLNQLFQTVAFLVPLPRPATGAANDVRLFSGGLKATGSCRKCLGIPVWQTIISEGLSLVMTITVAGIALAKAKGGVDSTPMFAVEVLDNIVNLAAIFYAVHARPKFFHPRPKSLSQLLDSASSGNTSSSLMGSFGGNVPXXXXXXXXXXXXXXAYRGRRRSESSISADGRGYAEGGSGRGDIGGLRGSGYGNSSNVGGRLPRPHSIGVTSSTPSFSSFHASSLQRRYSSGPIRRLPPVVDMSPESSGHGSPSRSSFNSRGQSPPPAAPSSNLPPKSEPPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASARTPGVAEVSPSSSRGTPYPARARGAAEKGSGSGRHGRPVGALYFSSRATKSMRRTPGSYTTGTASGNADGAVVNTGIAFTRGTPIRSMSARAAGAKHDDSISAVRSASTASVTXXXXXXXXXXXTAAERIPSRCSSISTMPAAAPELASDDREHDAAAAATARLGIPDAVVTSAPWKWHQQPGLAKLQRPFQSTNNWASSHLMKVALATDASSGSFSAVSSETTSSTSPERHAEAHKKMATETPDGVRIAAXXXXXXXAHTVVWPLPLNASGRASPPPGGRRHARLSARSLASLPSAAQGRTEKKEARRTGSGSRRKWHHKKRAKRVTETQSGAPTTAASATVAPGGKPPSSFVWREVGLQGTGSNPEAPXXXXXXXXXSTTNEVGASAAETGKRPPLERRTSSSATSRSRYSXXXXXXXXXXXXCSSSFDGNDNQRGAPAATVRSPASFLEGNDSNG 3153
GLAYWFNGIGGYDC AFST+MGASLSASNA+ FIHLFILSNSMHRANSRWKHFRW GVII+VFHWVALVALEGTRTAGKEERGGCAGESRCVTDVD LALTVKW+ QLLNQ+FQTVAFLVPL PA AAN VRLFSGGLKATGSCRKCL I ASSLQRRYSSGPIRRLPPVVDMSPESSGHGSPSRSS NS G+SPPPA PSSNLPPKSE PAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASAR GVAEVSPSSSRGTPY ARA+G AEK SGSGR+GRPVGALYF+SR TK+MRRTPG TTGTA GNADG VVNTGIAFTR TP RSMSARAAGAKHD+S SAVRSASTASVT TAAERI SRCSSISTMPAAAP A DDRE A A TARLGIPDAVVT+APWKWHQQPGL KLQRP ST++WASS LMKVALATDASSGSFSAVSSETTSSTSPERHAEAHKKM TETPDGVRIAAXXXXXXXAHTVVWPLPLNAS RAS P GG+RHARLSAR+LAS PSAA+ R EKKEARRTGSGSRR WHHKKRAK+VTET+S AASAT A GG+PPSSF+WREVGLQGTGS+ EAP STTN+ GA AAETGKRP LERRTSSSATSRSRYSXXXXXXXXXXXXCSSSFDGNDNQRGAPAATVRSP +F EGNDSNG
Sbjct: 19 GLAYWFNGIGGYDCFAFSTIMGASLSASNAMGFIHLFILSNSMHRANSRWKHFRWFGVIIMVFHWVALVALEGTRTAGKEERGGCAGESRCVTDVDGLALTVKWIMQLLNQMFQTVAFLVPLRMPAAEAANGVRLFSGGLKATGSCRKCLNIS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASSLQRRYSSGPIRRLPPVVDMSPESSGHGSPSRSSSNSCGESPPPAVPSSNLPPKSETPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------ASARXXGVAEVSPSSSRGTPYTARAKGTAEKRSGSGRYGRPVGALYFASRTTKNMRRTPGPSTTGTAMGNADGVVVNTGIAFTRSTPPRSMSARAAGAKHDESTSAVRSASTASVTTGGRGTAAAGGTAAERIQSRCSSISTMPAAAPGPAGDDREPGATVA-TARLGIPDAVVTAAPWKWHQQPGLTKLQRPLWSTDSWASSRLMKVALATDASSGSFSAVSSETTSSTSPERHAEAHKKMPTETPDGVRIAAXXXXXXXAHTVVWPLPLNASTRASRPSGGKRHARLSARALASSPSAAKVRAEKKEARRTGSGSRRNWHHKKRAKKVTETESETLAPAASATAASGGRPPSSFLWREVGLQGTGSHSEAPDAPASAASASTTNDAGAHAAETGKRPRLERRTSSSATSRSRYSXXXXXXXXXXXXCSSSFDGNDNQRGAPAATVRSPPAFYEGNDSNG 770
BLAST of mRNA_E-fasciculatus_F_contig1599.4100.1 vs. uniprot
Match: A0A6H5JLD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD8_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 6.690e-21 Identity = 51/60 (85.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query: 142 MPAPGFAALFEVAALSAGLTVAGIVGSRFVVRWHQCSGNADLSAAVSGLAAALLTLFFCL 321
M APGFAALFEVA L A LTVA IVGSRFVVRWHQCSG ADLSAAVSGLA+ALLTLF L
Sbjct: 1 MSAPGFAALFEVATLGAALTVASIVGSRFVVRWHQCSGTADLSAAVSGLASALLTLFLSL 60
BLAST of mRNA_E-fasciculatus_F_contig1599.4100.1 vs. uniprot
Match: A0A835ZIT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIT3_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 4.050e-16 Identity = 81/278 (29.14%), Postives = 127/278 (45.68%), Query Frame = 1
Query: 226 FVVRWHQCSGNADLSAAVSGLAAALLTLFFCLYGLAYWFNGIGGYD--CLAFSTVMGASLSASNALAFIHLFILSNSMHRANSRWKHFRWLGVIIVVFHWVALVALEGTRTAGKEERGGCAGESRCVTDVDSLALTVKWVAQLLNQLFQTVAFLVPL-----------------PR-------------PATGAANDVRLF--SGGLKATGSCRKCLGIPVWQTIISEGL-----SLVMTITVAGIALAKAKGGVDSTPMFAVEVLDNIVNLAAIFYA 942
F R Q S L +G A++LT+F+C+Y L Y++ + D C F V +ASNALAF+HLF+ +++++ N W +R G+ ++V + L+A+ TR+A + R GE RC + ++ +KWV QLL + ++ F+ PL PR P+ A + R S TGS R G V+Q ++ + S + TI VA + G V P+ A +LDN L AI++A
Sbjct: 16 FGARALQGSKRHPLMIHWTGFLASVLTIFYCVYELCYYYVNMASRDAHCAVFK-VWIVMRTASNALAFLHLFLRADAVNAINPNWPPWRRFGIALLVATLIMLIAVAATRSA-RLVRNPPFGE-RCEQSYEPVSFALKWVVQLLCHITFSLMFIYPLVDHMRAVRAAGLAVAHTPRSFLRRVLRRTVQKPSVTATENARAREDSNTAPVTGSMR---GDTVYQRLVRRAVISLVASSLFTIAVAVMVFLDIFGAVSDMPLVAFAILDNGFTLGAIYFA 287 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1599.4100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1599.4100.1 >prot_E-fasciculatus_F_contig1599.4100.1 ID=prot_E-fasciculatus_F_contig1599.4100.1|Name=mRNA_E-fasciculatus_F_contig1599.4100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1013bp MHRCAAVQMPAPGFAALFEVAALSAGLTVAGIVGSRFVVRWHQCSGNADLback to top mRNA from alignment at E-fasciculatus_F_contig1599:3246..12197- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1599.4100.1 ID=mRNA_E-fasciculatus_F_contig1599.4100.1|Name=mRNA_E-fasciculatus_F_contig1599.4100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=8952bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1599:3246..12197- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1599:3246..12197- >mRNA_E-fasciculatus_F_contig1599.4100.1 ID=mRNA_E-fasciculatus_F_contig1599.4100.1|Name=mRNA_E-fasciculatus_F_contig1599.4100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=6078bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1599:3246..12197- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |