mRNA_E-fasciculatus_F_contig1593.4059.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1593.4059.1
Unique NamemRNA_E-fasciculatus_F_contig1593.4059.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1593.4059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1593contigE-fasciculatus_F_contig1593:7859..10622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_003320.3
Exons2
Model size293
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928062.1028428-CDS-E-fasciculatus_F_contig1593:7858..79211622928062.1028428-CDS-E-fasciculatus_F_contig1593:7858..7921Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1593 7859..7921 +
1695995807.2910635-CDS-E-fasciculatus_F_contig1593:7858..79211695995807.2910635-CDS-E-fasciculatus_F_contig1593:7858..7921Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1593 7859..7921 +
1622928062.1168292-CDS-E-fasciculatus_F_contig1593:10394..106221622928062.1168292-CDS-E-fasciculatus_F_contig1593:10394..10622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1593 10395..10622 +
1695995807.3018365-CDS-E-fasciculatus_F_contig1593:10394..106221695995807.3018365-CDS-E-fasciculatus_F_contig1593:10394..10622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1593 10395..10622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1593.4059.1prot_E-fasciculatus_F_contig1593.4059.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1593 7859..10622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1593.4059.1

>prot_E-fasciculatus_F_contig1593.4059.1 ID=prot_E-fasciculatus_F_contig1593.4059.1|Name=mRNA_E-fasciculatus_F_contig1593.4059.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp
WKGGRTRPTRGYFINVQRSAKIIRMFTTINLRGTKFDVSNDILKRMPYFE
ALLERWTPADTVIDRCPDSFRHILDFLVCGGCDRVDGFMAMKLAKDS
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mRNA from alignment at E-fasciculatus_F_contig1593:7859..10622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1593.4059.1 ID=mRNA_E-fasciculatus_F_contig1593.4059.1|Name=mRNA_E-fasciculatus_F_contig1593.4059.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2764bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1593:7859..10622+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGAAGGGGGGACGGACCAGGCCTACACGTGGATACTTTATCAACGTCCA
GAGGAGCGCTAAAGTAAGCCAACCATGGCACGGAGAACAAATGAATGTCT
AGATACCTGCACTGGCAGCTGCTGCTGGCCTGCTAGCACAGCTGCAGCTG
ACAGTCTTCCCTCAAACAAACCTGTTCGCTCGTCCTCCACTGATTTCTTT
TTGCGGCAGCTTCGCATTGCCATGCCTGCAAAACCACCACAACTAAATCC
ACCACTTCATCACGGACAGAGTGTCGTCTCTTACAACATGCTGGTGGTTC
GAGGAAGCCGGTGATAGAGCCAGTTGAACATTCGCAAAGAGTCTAAAAGT
TGAAGTTAAATGTTCCGAGATCCACACGCGCGAGATGTCTGGATTTACCG
TATTGCAAAGTCTCGGTTTTCTGCAGCAGTCAGGCCGGCACTGGTTACGT
GATGCCCGCAAAATCACCGCGACCGCTCACTCCTGTTGATATGTTCATCG
CTTAGAACGTGTTCCCGCGTGGTGAAGCAGTAGACGGAGAAATACTGTAG
AGCAATCCATGAGAGCCGGCGACATACAACGGGACCGACAGATCGAATTT
GAAAATTGTCGAGAAACAGAAGGCAAAACACCGCAGCAGGGGTGGGTAGG
GGAGGCTCAGGGAGAGGAACAGCACCCTTCTGTGTGACCACGGGTTGTGG
AGTAAAACGGGAAAAATCCTGTGAGCGATGATTTGAAGAAAATAGACTAC
CCGAAAGCAGTATCGTAGAGGGGTGGAAGAGGTGGTACACCAGCGGGTCC
ATGGGCGTCATATGTTTGAGAACAACGCGTGGCTTCACCACCAACTGCGC
CCGGCATCCACTCGTCGTTCATCATATAACAACTGAGTTACAAAAAAGCT
CCGCGCACCGCAGCAGCAACCTGTATGTGCGCGGCATGCGGCGTTCAGTC
TGGTTGGCGTATTGCAAACTCAGAACATTTCCTTGTTAATTTGGGCAGAT
TGCCGGGATACTGCATAATGTGACTTGGAGAAACCATCGTCGGTTCGGGA
AGTTCCGGATGGACCTTCATTCCCGAATACATATTTGTATTCAGAGGGCA
GGTTGGGCCCGATTGCAAATTTATTCAGGAAGGATGTTCAGCTTCTTGTA
CCTCCGCCCGCAAGGGAAGTGCGGGAGATCTCGCGCGAGGGGACAACACA
CACCTTGACGAAACGGACCCCGGCTGCTATCACCACCGTGCAAGTCAGCG
TGGCGTCTACTTTGGAGGCACCCTCCTCCTGCGTGGGATATTACCGATGA
TGAGCAACGTTTCACTCCGTGTACAGCAGCACATCGACCACAACTCAACT
TGAAAAACCTATGGCCCCACCCATCAGCCACTCCTCCCAGCTGGTAGTTT
TCGGTCAGGGGAAACCACCGACAGAGGACGGACACAAGACCAGCAGCCCC
GGAGCTTTTAGGACAACGAGCACAAGCAAGAAGTCGTCCTCAATCTCTCA
TCGAGATATCCTCTCTACATTATCATTAAAACCGGCTGGGTATTCTTTTC
CGTCAGGGGTTCATCGAGGTTTCGCTATTGTGACACCAGTGCGTAACCAT
CTATCGTGCGATGGCCCTCCTGAAAGGCGCATGGTTGGATAACTGGCGCA
TGCGTGGCTAGGTTGTGGGTTGCGTGTTTTGCTGCGCGCCGTGTGTTTTG
TTGTCCGTTGATGATGTATACGTGCGTGTGGAATTAACAGCTGGTCAGTC
GGAGAGGGAGTCTCTCGCTTGTCTTGTGTGCCGTGCCCTCTGCCTCTCTG
TGGAAACACAAGTGTCCGCTTGAGATGGAGATGGCGAGCGGGCCCGCCGA
AAGACGAAACGGTTTAACGGTTTTACCCGTGAACCGCGCCAGACCGATTG
AGGCGTCCGCGATGACCGCTTCGTCCGGTTTCCGCGAGCGGGCGAGACAA
ACACAGAATGAGAAGCGAACAGAGCGGAGTAACGTGAAGAGGGGCCAGTG
CAAATTCAGCGCTGGCTCTCCTTTCTTCCTCTCTTTCTCTTTGCATACCG
TAGGAGGTGGGGAGATGGCACCCGAGTTTCAAAGCTTGATTTCTCCACAA
CCAAGTGGACGCGGAAAGAACCCGATACGTCTACGAAAAGCCCTCGACAA
GATATTTCCAAACCCGCCATTTCTTTACTACCACGAGCGTGATTGTGGAG
CAATCAAGCTTTGAAACTCGGTCTGGGGGAGGTGCCATCTTTCTTCCTCC
TGCGGTATTTCGGAAGGATAGTATAGCTACTATGTCCTGCAAAGAGATTT
TGACATAAAGAACAGACGAATGGAGGCGGAACTGGTGTCGTGTTAAGCTC
AGTGGCAGGAACTAGTCTTCTTGAGGCCCATCCATCCTTGATGTATCCAC
ACCTGACCGTGGTTTGCCGAACATACATACTCAACTGGGTCACCTCTGCT
CTCCCCATCCCTCGGCGTCCGCGTGTTGTTCGATGCATTGCGAATTTCTC
TTTGTTGATGTTATGGGGTATCGCCGATACTGCTAGATCATCCGCATGTT
CACCACTATCAACCTTCGGGGCACAAAGTTCGACGTCAGCAACGATATCC
TGAAGAGGATGCCGTACTTCGAGGCGTTGCTGGAAAGGTGGACACCCGCT
GACACTGTGATCGATAGATGCCCGGATTCGTTCCGTCACATCCTCGACTT
TTTGGTATGCGGAGGCTGTGATCGGGTCGACGGCTTCATGGCAATGAAAC
TAGCCAAGGATAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1593:7859..10622+

>mRNA_E-fasciculatus_F_contig1593.4059.1 ID=mRNA_E-fasciculatus_F_contig1593.4059.1|Name=mRNA_E-fasciculatus_F_contig1593.4059.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1593:7859..10622+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGAAGGGGGGACGGACCAGGCCTACACGTGGATACTTTATCAACGTCCA
GAGGAGCGCTAAATGGAAGGGGGGACGGACCAGGCCTACACGTGGATACT
TTATCAACGTCCAGAGGAGCGCTAAAATCATCCGCATGTTCACCACTATC
AACCTTCGGGGCACAAAGTTCGACGTCAGCAACGATATCCTGAAGAGGAT
GCCGTACTTCGAGGCGTTGCTGGAAAGGTGGACACCCGCTGACACTGTGA
TCGATAGATGCCCGGATTCGTTCCGTCACATCCTCGACTTTTTGGTATGC
GGAGGCTGTGATCGGGTCGACGGCTTCATGGCAATGAAACTAGCCAAGGA
TAGTATCATCCGCATGTTCACCACTATCAACCTTCGGGGCACAAAGTTCG
ACGTCAGCAACGATATCCTGAAGAGGATGCCGTACTTCGAGGCGTTGCTG
GAAAGGTGGACACCCGCTGACACTGTGATCGATAGATGCCCGGATTCGTT
CCGTCACATCCTCGACTTTTTGGTATGCGGAGGCTGTGATCGGGTCGACG
GCTTCATGGCAATGAAACTAGCCAAGGATAGT
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