mRNA_E-fasciculatus_F_contig15923.4057.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15923.4057.1
Unique NamemRNA_E-fasciculatus_F_contig15923.4057.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.970e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 123
            PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV
Sbjct:  539 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 579          
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.970e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 123
            PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV
Sbjct:  722 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 762          
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A836CA55_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA55_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.190e-14
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEK 117
            PVGHVLVFSFIQR+FP+FFPST+T+RRQNLLKMY EVEK
Sbjct:  231 PVGHVLVFSFIQRYFPDFFPSTFTERRQNLLKMYEEVEK 269          
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S1NU99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU99_9EUGL)

HSP 1 Score: 74.3 bits (181), Expect = 2.280e-14
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKK 120
            P+GHVLVFSFIQRFFP FFPS+++DRRQNLLKMY E+EKK
Sbjct:  692 PIGHVLVFSFIQRFFPEFFPSSFSDRRQNLLKMYEEIEKK 731          
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S3UWA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA8_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.230e-12
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKK 120
            PVGHVL+FSFIQRFFP+FFP+ YTD+RQNLLK+Y  +E+K
Sbjct:  316 PVGHVLIFSFIQRFFPDFFPTPYTDQRQNLLKLYETIEEK 355          
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S0U8H3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U8H3_HEMAN)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVE 114
            PVGHVLVFSFIQRFFP+FFPS YTDRRQ LL+MY  VE
Sbjct:  467 PVGHVLVFSFIQRFFPDFFPSPYTDRRQKLLRMYQAVE 504          
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S2XTH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTH3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.860e-12
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVE 114
            PVGHVLVFSFIQRFFP+FFPS++TDRRQNL +MY  +E
Sbjct:  268 PVGHVLVFSFIQRFFPDFFPSSFTDRRQNLARMYESIE 305          
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S1R4U4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R4U4_ALECA)

HSP 1 Score: 64.7 bits (156), Expect = 3.060e-12
Identity = 26/37 (70.27%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEV 111
            P+GHVLVFSFIQ+FFP+FFPST+T+RRQN++K+Y ++
Sbjct:   70 PIGHVLVFSFIQKFFPDFFPSTFTERRQNVVKIYQDI 106          
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.370e-12
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKK 120
            P+GHVLVFS IQR FP+FFPST+T+RRQNL KMY E++KK
Sbjct:  675 PIGHVLVFSLIQRIFPDFFPSTFTERRQNLSKMYDEIDKK 714          
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Match: A0A7S2X822_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2X822_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 3.580e-12
Identity = 28/41 (68.29%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 123
            PVGHVLVFS IQ+FFP+F+PS YT+RRQNL+++Y E+E+K+
Sbjct:  133 PVGHVLVFSAIQKFFPDFYPSPYTERRQNLVRLYQEIEQKL 173          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15923.4057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP03_ECTSI1.970e-18100.00LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LQ87_9PHAE1.970e-18100.00LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CA55_9STRA1.190e-1487.18LETM1 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S1NU99_9EUGL2.280e-1482.50Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3UWA8_HETAK1.230e-1275.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0U8H3_HEMAN2.460e-1284.21Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2XTH3_9STRA2.860e-1278.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1R4U4_ALECA3.060e-1270.27Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A4D9D1V1_9STRA3.370e-1275.00LETM1 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S2X822_9EUKA3.580e-1268.29Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15923contigE-fasciculatus_F_contig15923:45..179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.1e-15
Seed eggNOG ortholog2880.D8LP03
EggNOG free text desc.calcium export from the mitochondrion
EggNOG OGsKOG1043@1,KOG1043@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928062.0557978-CDS-E-fasciculatus_F_contig15923:44..1791622928062.0557978-CDS-E-fasciculatus_F_contig15923:44..179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15923 45..179 +
1695995807.2766714-CDS-E-fasciculatus_F_contig15923:44..1791695995807.2766714-CDS-E-fasciculatus_F_contig15923:44..179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15923 45..179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15923.4057.1prot_E-fasciculatus_F_contig15923.4057.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15923 45..179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15923.4057.1

>prot_E-fasciculatus_F_contig15923.4057.1 ID=prot_E-fasciculatus_F_contig15923.4057.1|Name=mRNA_E-fasciculatus_F_contig15923.4057.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=45bp
PVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKVQQY*
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mRNA from alignment at E-fasciculatus_F_contig15923:45..179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15923.4057.1 ID=mRNA_E-fasciculatus_F_contig15923.4057.1|Name=mRNA_E-fasciculatus_F_contig15923.4057.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=135bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15923:45..179+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGTCGGACACGTATTGGTGTTTTCGTTCATCCAGAGGTTCTTCCCCAA CTTCTTCCCCTCTACCTACACGGACCGGAGACAGAATCTGCTCAAGATGT ACACCGAGGTCGAGAAAAAGGTACAGCAGTACTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15923:45..179+

>mRNA_E-fasciculatus_F_contig15923.4057.1 ID=mRNA_E-fasciculatus_F_contig15923.4057.1|Name=mRNA_E-fasciculatus_F_contig15923.4057.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15923:45..179+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGTCGGACACGTATTGGTGTTTTCGTTCATCCAGAGGTTCTTCCCCAA
CTTCTTCCCCTCTACCTACACGGACCGGAGACAGAATCTGCTCAAGATGT
ACACCGAGGTCGAGAAAAAGGTACAGCAGTACTAACCAGTCGGACACGTA
TTGGTGTTTTCGTTCATCCAGAGGTTCTTCCCCAACTTCTTCCCCTCTAC
CTACACGGACCGGAGACAGAATCTGCTCAAGATGTACACCGAGGTCGAGA
AAAAGGTACAGCAGTACTAA
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