mRNA_E-fasciculatus_F_contig15802.3993.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15802.3993.1
Unique NamemRNA_E-fasciculatus_F_contig15802.3993.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15802.3993.1 vs. uniprot
Match: A0A6H5KV73_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV73_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 9.300e-43
Identity = 75/88 (85.23%), Postives = 80/88 (90.91%), Query Frame = 3 
Query:  186 MLPCNHPLCRGCAMQCFKESQRCPQCMTPIPNLRMLQGRNKWIVQMVGTLKSCLDHVGVSLTQHAPVPSKYRDKPPPQSGAAGKAARE 449
            MLPCNHPLCRGCA QCFKESQRCPQCMTPIPNLRMLQGRNKWIV MV  LK+ ++ VGVSLTQH+PVPSKYRD P P+SGAAGKAARE
Sbjct:    1 MLPCNHPLCRGCASQCFKESQRCPQCMTPIPNLRMLQGRNKWIVHMVDKLKNSINDVGVSLTQHSPVPSKYRDNPSPKSGAAGKAARE 88
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BLAST of mRNA_E-fasciculatus_F_contig15802.3993.1 vs. uniprot
Match: A0A3B4TF43_SERDU (RING-type domain-containing protein n=1 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4TF43_SERDU)

HSP 1 Score: 58.9 bits (141), Expect = 7.780e-8
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 3 
Query:  150 CCICFSILEDPVMLPCNHPLCRGCAMQCFKESQRCPQCMTPIP 278
            C IC S  + PV  PC H  C+ C +  +KE+QRCPQC TPIP
Sbjct:   20 CSICLSTFDCPVTTPCGHNFCQDCLLATWKETQRCPQCRTPIP 62
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15802.3993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV73_9PHAE9.300e-4385.23BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A3B4TF43_SERDU7.780e-853.49RING-type domain-containing protein n=1 Tax=Seriol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15802contigE-fasciculatus_F_contig15802:673..2717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-06_004780.1
Exons3
Model size623
Cds size600
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15802.3993.1prot_E-fasciculatus_F_contig15802.3993.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15802 696..2717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928050.7511475-UTR-E-fasciculatus_F_contig15802:672..6951622928050.7511475-UTR-E-fasciculatus_F_contig15802:672..695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15802 673..695 +
1695995803.515903-UTR-E-fasciculatus_F_contig15802:672..6951695995803.515903-UTR-E-fasciculatus_F_contig15802:672..695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15802 673..695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928050.7680776-CDS-E-fasciculatus_F_contig15802:695..8381622928050.7680776-CDS-E-fasciculatus_F_contig15802:695..838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15802 696..838 +
1695995803.5289204-CDS-E-fasciculatus_F_contig15802:695..8381695995803.5289204-CDS-E-fasciculatus_F_contig15802:695..838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15802 696..838 +
1622928050.783528-CDS-E-fasciculatus_F_contig15802:1963..21811622928050.783528-CDS-E-fasciculatus_F_contig15802:1963..2181Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15802 1964..2181 +
1695995803.5394027-CDS-E-fasciculatus_F_contig15802:1963..21811695995803.5394027-CDS-E-fasciculatus_F_contig15802:1963..2181Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15802 1964..2181 +
1622928050.8042185-CDS-E-fasciculatus_F_contig15802:2478..27171622928050.8042185-CDS-E-fasciculatus_F_contig15802:2478..2717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15802 2479..2717 +
1695995803.5487244-CDS-E-fasciculatus_F_contig15802:2478..27171695995803.5487244-CDS-E-fasciculatus_F_contig15802:2478..2717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15802 2479..2717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15802.3993.1

>prot_E-fasciculatus_F_contig15802.3993.1 ID=prot_E-fasciculatus_F_contig15802.3993.1|Name=mRNA_E-fasciculatus_F_contig15802.3993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=200bp
MAEVDGLAGPGAGKSARQAPESIGSVADFMETVKETAGKHFKCCICFSIL
EDPVMLPCNHPLCRGCAMQCFKESQRCPQCMTPIPNLRMLQGRNKWIVQM
VGTLKSCLDHVGVSLTQHAPVPSKYRDKPPPQSGAAGKAARERARARARA
SSGEADLPSASCGGGGGGSGGGSRGRGKARHRRRANGGASRGGAAATPAA
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mRNA from alignment at E-fasciculatus_F_contig15802:673..2717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15802.3993.1 ID=mRNA_E-fasciculatus_F_contig15802.3993.1|Name=mRNA_E-fasciculatus_F_contig15802.3993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2045bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15802:673..2717+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGACAGCAGAGAGCAGACCATGGCTGAGGTGGATGGCCTTGCTGGG
CCAGGCGCGGGGAAGAGTGCGAGGCAGGCGCCCGAGAGTATAGGCTCGGT
TGCAGATTTCATGGAGACCGTGAAGGAAACGGCTGGCAAGCACTTCAAGT
GCTGCATTTGTTTCAGGTCAGTTGGCTGTTTCGCTTCCCACTTCCCACAC
ACCACCTCGTCCCGCACGCACCACTTCTGCTTTGAAAGAATGCCCATCGC
TTCTCGCTGACACTGAACCGCCTATGTTTTTGCCAGGGCTATTTGCTCAT
TCTTGTGAGACAATACTCCATATTCTGCAGGTGCAAGGCTGAAACACTCT
GTTGGTCTGGTTGGTTCACCCACTACATCGTACCCTGCAGCACGATGTTT
TTCACCCACATAACCCATTATTTACTTGACATCGCCCAATGGAGCACCAC
TGACAAGGAGCAAGGTACTACATAATGTAAGGTACTACATAATGTTGTAC
AATATTTTTATCCGCAGAAGCACAACCGTGCGGCGCAGCAAAGCCTGTGT
ACCTATGTATGCATACACCAAGACAGAGAGTCCTCATACACGTAAGATAT
CACACCCCCTTCGATGGATTTTCAAAACCTGACAAAATACTCTGCACCAA
AACAGCAGTAGCACTGCTGTAGTGATGGTGCCAAAAATGGCAGCGTTGTC
GTCGAGACCTTACCGGGCACGCATCATTTGATCCTAAAGTCCTCTTCATA
GTGGAGGAGCCGAGCCTTGAAACTCGGTCCATGGGGTGTGGTATCTTCTG
CGACCTACGGTCTACATCACTTACACTGCTGTTGCAGATCGACTGCAGCA
ATGCTTGCAAAAGGATAACAGGTAGGCGTGGTGCGGTAAAACTAGAGGCA
TGCCTCGCAAACAGCACATTTGGCAAAATGACACACACACACAAATGGTA
TGGCACATTGCCCAACACTCCGGGGCACATCCATACACACTCTCTAATCC
TTCAAATCCAAACCGCCTCCTCCGTGCATTTTGGCGAACACAACAAGTCA
GCAGTATTGGAGCAGTTGAAATCAACCGAGCACGACAGCAGTAGTGCACG
GCAGCCACCGGCAGCCACCGCGGTATCGTACGAACTGTTTTTCGGGTCTG
TAATGGTTGCCCGGCGCGATCTCACTTGTAAATACACCTTGCGCCGCCGT
CCACCATCCACGGCCGCTCTAACTGCCTGTCGCCCTTCGTTCGTTCGGAC
CTCTCCACCACCCCCCCTGCCCCGGTTTCTCGAACACCCAGCATCCTCGA
AGACCCCGTAATGCTGCCGTGCAACCACCCCCTGTGTCGAGGCTGCGCTA
TGCAGTGCTTCAAGGAGAGCCAGCGGTGCCCCCAGTGCATGACCCCCATC
CCCAACCTGCGGATGCTCCAGGGGCGAAACAAGTGGATCGTGCAAATGGT
CGGCACGCTCAAGAGCTGTCTCGACCACGTCGGGGTTAGCCTCACGCAGC
ACGCGCCAGGTCAGTTGCTCGATTGTTATTTTGCTGGTTCAGCGCCCGCG
GTACGGCGGTGCCCCGCCCTGCTGCGGTGTCGCAGAGAGTTGTAGGAGGT
GCGGTTCGGGCGCAGTGGTCGTAAGCGACTCTTCGAACGGGCTACCACTC
CCGAACGCGTTACACGACTACTGTTGGAGGTGGCTCGAAAACAGCTAGGA
CCTACATACATACAATGCAAGTGGTGTCTCTCTCATCCTTCATGCCCGGG
TCACGTCTGTTGGTCACCCCCCCAATCTCCCTCTTCCCCCCGTCGCCCCT
TCCCAGTCCCGTCCAAGTACCGCGACAAGCCGCCACCACAGTCGGGGGCC
GCGGGCAAGGCTGCGCGCGAGCGAGCACGTGCGCGTGCGCGGGCATCCTC
GGGAGAAGCCGACCTTCCTTCGGCGAGCTGCGGGGGCGGCGGCGGCGGGA
GCGGAGGCGGCAGTCGCGGCCGGGGCAAGGCAAGGCATAGGCGAAGAGCC
AACGGCGGCGCGAGTAGAGGGGGGGCGGCGGCAACTCCGGCGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15802:673..2717+

>mRNA_E-fasciculatus_F_contig15802.3993.1 ID=mRNA_E-fasciculatus_F_contig15802.3993.1|Name=mRNA_E-fasciculatus_F_contig15802.3993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1200bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15802:673..2717+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTGAGGTGGATGGCCTTGCTGGGCCAGGCGCGGGGAAGAGTGCGAG
GCAGGCGCCCGAGAGTATAGGCTCGGTTGCAGATTTCATGGAGACCGTGA
AGGAAACGGCTGGCAAGCACTTCAAGTGCTGCATTTGTTTCAGATGGCTG
AGGTGGATGGCCTTGCTGGGCCAGGCGCGGGGAAGAGTGCGAGGCAGGCG
CCCGAGAGTATAGGCTCGGTTGCAGATTTCATGGAGACCGTGAAGGAAAC
GGCTGGCAAGCACTTCAAGTGCTGCATTTGTTTCAGCATCCTCGAAGACC
CCGTAATGCTGCCGTGCAACCACCCCCTGTGTCGAGGCTGCGCTATGCAG
TGCTTCAAGGAGAGCCAGCGGTGCCCCCAGTGCATGACCCCCATCCCCAA
CCTGCGGATGCTCCAGGGGCGAAACAAGTGGATCGTGCAAATGGTCGGCA
CGCTCAAGAGCTGTCTCGACCACGTCGGGGTTAGCCTCACGCAGCACGCG
CCAGCATCCTCGAAGACCCCGTAATGCTGCCGTGCAACCACCCCCTGTGT
CGAGGCTGCGCTATGCAGTGCTTCAAGGAGAGCCAGCGGTGCCCCCAGTG
CATGACCCCCATCCCCAACCTGCGGATGCTCCAGGGGCGAAACAAGTGGA
TCGTGCAAATGGTCGGCACGCTCAAGAGCTGTCTCGACCACGTCGGGGTT
AGCCTCACGCAGCACGCGCCAGTCCCGTCCAAGTACCGCGACAAGCCGCC
ACCACAGTCGGGGGCCGCGGGCAAGGCTGCGCGCGAGCGAGCACGTGCGC
GTGCGCGGGCATCCTCGGGAGAAGCCGACCTTCCTTCGGCGAGCTGCGGG
GGCGGCGGCGGCGGGAGCGGAGGCGGCAGTCGCGGCCGGGGCAAGGCAAG
GCATAGGCGAAGAGCCAACGGCGGCGCGAGTAGAGGGGGGGCGGCGGCAA
CTCCGGCGGCGTCCCGTCCAAGTACCGCGACAAGCCGCCACCACAGTCGG
GGGCCGCGGGCAAGGCTGCGCGCGAGCGAGCACGTGCGCGTGCGCGGGCA
TCCTCGGGAGAAGCCGACCTTCCTTCGGCGAGCTGCGGGGGCGGCGGCGG
CGGGAGCGGAGGCGGCAGTCGCGGCCGGGGCAAGGCAAGGCATAGGCGAA
GAGCCAACGGCGGCGCGAGTAGAGGGGGGGCGGCGGCAACTCCGGCGGCG
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