mRNA_E-fasciculatus_F_contig1578.3976.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1578.3976.1
Unique NamemRNA_E-fasciculatus_F_contig1578.3976.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: D7FT56_ECTSI (tRNA-uridine aminocarboxypropyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT56_ECTSI)

HSP 1 Score: 606 bits (1563), Expect = 6.420e-212
Identity = 370/455 (81.32%), Postives = 380/455 (83.52%), Query Frame = 1 
Query:   85 MILVRLMLALAAQAVAVAGQRCGAPERLRGRSSXXXXXXXXXXXXXXXGRSSDALLFSCPTTLTPFLAVRRRKSRRAACAAGEIGDDTAPSQAVQSYYERRREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERVSDSSSEPENSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSTQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXV-LVDGTWSQAKQILSRYPALLRRPGTVTTPAGQKVRELGASVGGVSTATVGSSVEAGGGGSCDGRWNGSEGGSGGREAGQGEEGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADAGGRQPRFVNRKERTTNRRLTPKKG 1446
            MILVRLMLA AAQAVAVAGQ+ GA ERLR RSS               GR+SDAL F CPTTLTPFL VRRRK RRAACAA EIG+D APSQAVQSYYERRREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSE+DLRKALGVEVA  RSPERVS+ SSE ENSAS   PLLL+PCPGAEYLEDIAA R+QPAPS QP P     XXXXXXXXXXXXXXXXXXXXXXX  LVDGTWSQAKQILSRYP+LLR P T TTPAGQK RELGASVGGV  A                        SGGREAG  E+GALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADAGGR+PRFVNRKERTTNRR TPKKG
Sbjct:    1 MILVRLMLAFAAQAVAVAGQKSGASERLRARSSSASALRLLLPPPGSAGRNSDAL-FCCPTTLTPFLTVRRRKPRRAACAAREIGND-APSQAVQSYYERRREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEQDLRKALGVEVAIYRSPERVSEISSERENSASTGIPLLLFPCPGAEYLEDIAASRDQPAPSAQPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDGTWSQAKQILSRYPSLLR-PTTATTPAGQKTRELGASVGGVPVAAXXXXXXXXXXXXXXXXXXXXXXXSGGREAGPMEDGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADAGGRRPRFVNRKERTTNRRSTPKKG 452
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: L1J958_GUITC (tRNA-uridine aminocarboxypropyltransferase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J958_GUITC)

HSP 1 Score: 93.6 bits (231), Expect = 6.860e-17
Identity = 96/331 (29.00%), Postives = 134/331 (40.48%), Query Frame = 1 
Query:  424 GRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEE--DLRKALGVEVARDRSPERVSDSSSEPENSA---SVRTPLLLYPCPGAEYLEDIAAFREQPAPSTQPLPSP-------PGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSRYPALLRRPGTVTTPAGQKVRELGASVGGVSTATVGSSVEAGGGGSCDGRWNGSEGGSGGREAGQGEEGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADAGG 1380
            GR +C+RC R   +C+CSSLPAE +   T+ +++QHP E  K++ GTVPL+   L N   VV R + ++E    R   G +V  D       DSSS  ++S+    V        CP  +  + I        P+ +   S        PG                        ++VDGTW QA +++      +RR                                                          E G + R V+F  AG SGY FR+EP + CLSTLESVAY+L+ LE T +G  A  +L   F  MVS+Q S    GG
Sbjct:    2 GRAVCQRCGRPETVCVCSSLPAEKIMLKTKILVVQHPCECHKKIIGTVPLMELVLDNMQVVVARGNGAKEASTTRGRRGRKVGSDEGSPLSYDSSSSQDDSSLLQKVNDASDTAACP-IQNKKGIIHGTLDGNPALEAALSDKKTLLLYPGPGAVDIETLQLDDSDSERTL----IVVDGTWRQAGRVIRE--ECIRRAV--------------------------------------------------------ERGDVTR-VQFARAGRSGYKFRKEPHQFCLSTLESVAYSLQYLEKTSEGERAVCHLMDTFSQMVSLQTSYIAKGG 268
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: A0A836CLP8_9STRA (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLP8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.260e-13
Identity = 47/79 (59.49%), Postives = 51/79 (64.56%), Query Frame = 1 
Query: 1168 LCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADAGGRQPRFVNR 1404
            LC  V+FR  G S Y  RREP   CLSTLES+AY+LEVLE T Q  AAA  LRKAF AMV  Q+  AD  G   RFV R
Sbjct:   34 LCTPVQFRDGGSSTYTIRREPMPHCLSTLESIAYSLEVLEATDQARAAAVSLRKAFAAMVRHQVRSADEVGN-VRFVKR 111
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: UPI001C8A216D (tRNA-uridine aminocarboxypropyltransferase 2 isoform X1 n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A216D)

HSP 1 Score: 68.6 bits (166), Expect = 4.860e-9
Identity = 67/205 (32.68%), Postives = 84/205 (40.98%), Query Frame = 1 
Query:  427 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCL--ANCTRVVMRYDYSEEDLRKALGVEVARDRSPERVS---DSSSEPENSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSTQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSRYPALLRRPGTV---TTPAGQKV 1017
            R  C RC R  ++CLC  LP   +  STR  I+QHPAE + RV  TVPL+  CL    C              R  +G   + DR PE  +   DSS+           LLLYP  GAE LED++                                          +L+DGTWSQAK +  R  ALLR P  V   + P+ Q V
Sbjct:   50 RPTCFRCCRPLKVCLCPYLPPRPLDVSTRLYIVQHPAE-ESRVLRTVPLLTACLPPGKC--------------RVFVGRRFSEDRYPELAAVCKDSST-----------LLLYPGAGAENLEDLST--------------------------------DFTATEHSVILIDGTWSQAKDMFLRN-ALLRLPRQVQLRSAPSSQYV 195
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: A0A553NIB7_9TELE (tRNA-uridine aminocarboxypropyltransferase (Fragment) n=3 Tax=Danionella translucida TaxID=623744 RepID=A0A553NIB7_9TELE)

HSP 1 Score: 70.5 bits (171), Expect = 5.860e-9
Identity = 82/289 (28.37%), Postives = 106/289 (36.68%), Query Frame = 1 
Query:  433 LCERC-RRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLA-NCTRVVMRYDYSEEDLRKALGVEVARDRSPERVSDSSSEPENSASVRTP--LLLYPCPGAEYLEDIAAFREQPAPSTQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSRYPALLRRPGTVTTPAGQKVRELGASVGGVSTATVGSSVEAGGGGSCDGRWNGSEGGSGGREAGQGEEGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLE 1287
            +C  C RR  ++CLC  LPA  +  STR  I+QHPAE + RV  TVPL+  CL  +  RV++   +SEE   +A   E  R      V  S   PE +A  +    LLLYP   AE LE++    + P                                    +L+DGTWSQAK I  R  ALL+R                                                                R V+ R A  S Y  R +P+  C+STLE  A  L  LE
Sbjct:  489 VCVLCFRRPEKVCLCPFLPALPLDISTRLYIVQHPAE-ESRVLRTVPLLAACLPPDRCRVIVGRRFSEERCVRAWSREP-RHAQARHVVCSRRFPELAAVCKDSRTLLLYPGATAENLEELRLDSDPP---------------------------------HSLILIDGTWSQAKDIYGRN-ALLQR---------------------------------------------------------------ARQVQLRSASCSQYVIRTQPSDSCVSTLECAAVALAALE 678
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: A0A5N6NCR0_9ASTR (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCR0_9ASTR)

HSP 1 Score: 65.1 bits (157), Expect = 2.060e-8
Identity = 50/177 (28.25%), Postives = 72/177 (40.68%), Query Frame = 1 
Query:  427 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERVSDSSSEPENSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSTQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILS 957
            R +C  C R   +CLC SLPAE + T+T+ VILQHP E + R+  TVP++  CL NC  ++ R        R  LG     D     + D++S+     S++   L                     P T P PS                           ++ DGTW  AK+++S
Sbjct:   18 RRICNACERPATVCLCDSLPAEPLSTTTQIVILQHPHEQRHRL-ATVPVLNKCLRNCQTLIGR--------RLRLGDSALLD----SLHDAASDQNPPRSIQAAFLF--------------------PGTDPAPS-------MEINRWLSSFGDTNMNKFVLIVFDGTWKHAKEMVS 154
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: UPI001955E9FB (tRNA-uridine aminocarboxypropyltransferase 2 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955E9FB)

HSP 1 Score: 66.6 bits (161), Expect = 2.130e-8
Identity = 59/185 (31.89%), Postives = 74/185 (40.00%), Query Frame = 1 
Query:  427 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERVS---DSSSEPENSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSTQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSRYPAL 972
            R  C RC R  ++CLC  LPA  +  ST   I+QHPAE + RV  TVPL+  CLA                R  +G   + DR P+  +   DSSS           LLLYP   AE LED++                                          +L+DGTWSQAK +  R P L
Sbjct:   53 RPTCRRCCRPVKVCLCPYLPALPLDVSTSLYIVQHPAE-ESRVLRTVPLLAACLA------------PGKCRVFVGRRFSEDRYPDLAAVCRDSSS-----------LLLYPGAAAESLEDLS----------------------------------FSSATHSVILIDGTWSQAKDMFLRNPLL 179
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: A0A6J0SH94_9SAUR (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SH94_9SAUR)

HSP 1 Score: 65.9 bits (159), Expect = 4.050e-8
Identity = 57/178 (32.02%), Postives = 74/178 (41.57%), Query Frame = 1 
Query:  427 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERVSDSSSEPENSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSTQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILSR 960
            R  C RC R +++CLC  LP   +  ST   I+QHPAE + RV  TVPL+  CL              ED  K L   + R  S E   + +S   NS +    L+LYP  GA  LED+     +P                                    +++DGTWSQAK I SR
Sbjct:   56 RPECGRCGRPQKVCLCPFLPVHPLNVSTCLYIIQHPAE-ENRVLRTVPLLAACLP-------------EDKCKVL---IGRRFSEEGYPELASVCRNSNT----LILYPGAGATNLEDVDLSTIEP---------------------------------YVIIIIDGTWSQAKDIFSR 179
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: A0A3Q2XIG1_HIPCM (tRNA-uridine aminocarboxypropyltransferase n=2 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2XIG1_HIPCM)

HSP 1 Score: 65.9 bits (159), Expect = 4.310e-8
Identity = 55/177 (31.07%), Postives = 76/177 (42.94%), Query Frame = 1 
Query:  427 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCL--ANCTRVVMRYDYSEEDLRKALGVEVARDRSPERVSDSSSEPENSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSTQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQI 951
            R  C RCRR  ++CLC  LPA+ +  ST   I+QHPAE + RV  TVPL+  CL    C  ++ R     ++   A   +V RD                   RT L+LYP P ++ LE++    E+ A +                                 +L+DGTWSQAK I
Sbjct:   56 RPTCLRCRRPEKVCLCPFLPAQPLDVSTCLYIVQHPAE-ESRVLRTVPLLAACLPLGKCNVIIGRRFNEAKNPELA---KVCRD------------------SRT-LILYPGPNSQNLEELVQLPEEGAKTHN------------------------------IILIDGTWSQAKNI 179
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Match: A0A5N6NBE8_9ASTR (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBE8_9ASTR)

HSP 1 Score: 64.7 bits (156), Expect = 7.330e-8
Identity = 50/177 (28.25%), Postives = 71/177 (40.11%), Query Frame = 1 
Query:  427 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPERVSDSSSEPENSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSTQPLPSPPGAXXXXXXXXXXXXXXXXXXXXXXXVLVDGTWSQAKQILS 957
            R +C  C R   +CLC SLPAE + T+T+ VILQHP E + R+  TVP++  CL NC  ++ R        R  LG     D     + D++S+     S+    L                     P T P PS                           ++ DGTW  AK+++S
Sbjct:   18 RRICNACERPATVCLCDSLPAEPLSTTTQIVILQHPHEQRHRL-ATVPVLNKCLRNCQTLIGR--------RLRLGDSALLD----SLHDAASDQNPPRSIHAAFLF--------------------PGTDPTPS-------MEINRWISSFGDTNVNKFVLIVFDGTWKHAKEMVS 154
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1578.3976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT56_ECTSI6.420e-21281.32tRNA-uridine aminocarboxypropyltransferase n=2 Tax... [more]
L1J958_GUITC6.860e-1729.00tRNA-uridine aminocarboxypropyltransferase n=2 Tax... [more]
A0A836CLP8_9STRA1.260e-1359.49tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
UPI001C8A216D4.860e-932.68tRNA-uridine aminocarboxypropyltransferase 2 isofo... [more]
A0A553NIB7_9TELE5.860e-928.37tRNA-uridine aminocarboxypropyltransferase (Fragme... [more]
A0A5N6NCR0_9ASTR2.060e-828.25tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
UPI001955E9FB2.130e-831.89tRNA-uridine aminocarboxypropyltransferase 2 n=1 T... [more]
A0A6J0SH94_9SAUR4.050e-832.02tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
A0A3Q2XIG1_HIPCM4.310e-831.07tRNA-uridine aminocarboxypropyltransferase n=2 Tax... [more]
A0A5N6NBE8_9ASTR7.330e-828.25tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1578contigE-fasciculatus_F_contig1578:10329..14866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score605.9
Seed ortholog evalue1.6e-170
Seed eggNOG ortholog2880.D7FT56
EggNOG free text desc.DTW
EggNOG OGsCOG3148@1,KOG4382@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003520.1
Exons6
Model size1788
Cds size1410
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1578.3976.1prot_E-fasciculatus_F_contig1578.3976.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1578 10623..14782 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928048.044788-UTR-E-fasciculatus_F_contig1578:10328..106221622928048.044788-UTR-E-fasciculatus_F_contig1578:10328..10622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1578 10329..10622 -
1695995802.1949365-UTR-E-fasciculatus_F_contig1578:10328..106221695995802.1949365-UTR-E-fasciculatus_F_contig1578:10328..10622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1578 10329..10622 -
1622928048.187075-UTR-E-fasciculatus_F_contig1578:14782..148661622928048.187075-UTR-E-fasciculatus_F_contig1578:14782..14866Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1578 14783..14866 -
1695995802.2771194-UTR-E-fasciculatus_F_contig1578:14782..148661695995802.2771194-UTR-E-fasciculatus_F_contig1578:14782..14866Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1578 14783..14866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928048.0623798-CDS-E-fasciculatus_F_contig1578:10622..108381622928048.0623798-CDS-E-fasciculatus_F_contig1578:10622..10838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 10623..10838 -
1695995802.2145739-CDS-E-fasciculatus_F_contig1578:10622..108381695995802.2145739-CDS-E-fasciculatus_F_contig1578:10622..10838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 10623..10838 -
1622928048.072916-CDS-E-fasciculatus_F_contig1578:11651..120941622928048.072916-CDS-E-fasciculatus_F_contig1578:11651..12094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 11652..12094 -
1695995802.22646-CDS-E-fasciculatus_F_contig1578:11651..120941695995802.22646-CDS-E-fasciculatus_F_contig1578:11651..12094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 11652..12094 -
1622928048.0902686-CDS-E-fasciculatus_F_contig1578:12376..124341622928048.0902686-CDS-E-fasciculatus_F_contig1578:12376..12434Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 12377..12434 -
1695995802.2380233-CDS-E-fasciculatus_F_contig1578:12376..124341695995802.2380233-CDS-E-fasciculatus_F_contig1578:12376..12434Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 12377..12434 -
1622928048.1056113-CDS-E-fasciculatus_F_contig1578:13115..133441622928048.1056113-CDS-E-fasciculatus_F_contig1578:13115..13344Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 13116..13344 -
1695995802.2475224-CDS-E-fasciculatus_F_contig1578:13115..133441695995802.2475224-CDS-E-fasciculatus_F_contig1578:13115..13344Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 13116..13344 -
1622928048.1337178-CDS-E-fasciculatus_F_contig1578:13589..136751622928048.1337178-CDS-E-fasciculatus_F_contig1578:13589..13675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 13590..13675 -
1695995802.2571495-CDS-E-fasciculatus_F_contig1578:13589..136751695995802.2571495-CDS-E-fasciculatus_F_contig1578:13589..13675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 13590..13675 -
1622928048.1646569-CDS-E-fasciculatus_F_contig1578:14404..147821622928048.1646569-CDS-E-fasciculatus_F_contig1578:14404..14782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 14405..14782 -
1695995802.266689-CDS-E-fasciculatus_F_contig1578:14404..147821695995802.266689-CDS-E-fasciculatus_F_contig1578:14404..14782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1578 14405..14782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1578.3976.1

>prot_E-fasciculatus_F_contig1578.3976.1 ID=prot_E-fasciculatus_F_contig1578.3976.1|Name=mRNA_E-fasciculatus_F_contig1578.3976.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=470bp
MILVRLMLALAAQAVAVAGQRCGAPERLRGRSSSSSALRLLLPPPGSAGR
SSDALLFSCPTTLTPFLAVRRRKSRRAACAAGEIGDDTAPSQAVQSYYER
RREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHP
AETKKRVTGTVPLVLHCLANCTRVVMRYDYSEEDLRKALGVEVARDRSPE
RVSDSSSEPENSASVRTPLLLYPCPGAEYLEDIAAFREQPAPSTQPLPSP
PGAAAGAAEEAATGGGGGGGGGGEVVVLVDGTWSQAKQILSRYPALLRRP
GTVTTPAGQKVRELGASVGGVSTATVGSSVEAGGGGSCDGRWNGSEGGSG
GREAGQGEEGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVL
EGTPQGLAAAAYLRKAFKAMVSMQLSRADAGGRQPRFVNRKERTTNRRLT
PKKGFFETRASSLSPDARN*
back to top

mRNA from alignment at E-fasciculatus_F_contig1578:10329..14866-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1578.3976.1 ID=mRNA_E-fasciculatus_F_contig1578.3976.1|Name=mRNA_E-fasciculatus_F_contig1578.3976.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4538bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1578:10329..14866- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGGCCGTGTCCGCCCTCCATACTGCGATGTGCATGCCATTTGCGTGCG
TGTGCGTGCAAGAAAGTGACCCGTCGATTGAAGGATGATCTTGGTCCGGT
TGATGCTTGCGCTTGCCGCTCAGGCCGTAGCGGTAGCGGGACAGAGATGC
GGTGCACCGGAGCGCCTTCGAGGGCGTTCTTCATCATCGTCTGCGCTGCG
GTTGCTGTTGCCGCCGCCTGGCTCTGCTGGCAGAAGCTCAGATGCCTTGC
TGTTCAGCTGCCCGACTACCCTTACCCCTTTCTTGGCTGTGAGGCGAAGA
AAGTCTCGCCGGGCGGCTTGCGCAGCCGGAGAGATCGGTGACGATACCGC
ACCATCACAGGCCGTCCAGTCGTACTACGAGCGCAGGCGGGAGGCCATGG
GCGCGTGGACGGAGGAGAGGCGAGGCAGGGACCTGTGCGAGCGGTGTCGG
AGGGCTCGAGAGGTCAGCAATCGCTCTTTGTGTGCAGCACTAAGCGTTCC
TTCGGTCTATTGTACCATTATTGTTTCTCTGCAGGAGGTGTGCTGCGCCA
ACCCACGCTGCGATTTACATAGTTTCACCGCCTTTCTTTGTTGAGGCGTG
TTGACGGCTGCTCCCGAGAGCAAAAGTTTAACTTCCATCCCCTCGACAGC
ATACTTCCTTGATGGAAATCGAGCGCAAAGTTTCGCCTCATTGTTCTCAA
GTAGCCATGCAGCGTTGCCTTTGAGCATAGTTATCTACACAGAGTGCGGG
CCTGCTCACGAGAACATGCCCACATTACGTCAAGCTCAGATTCACGAAAG
AAATACATCGGAGTAACGGTGCAAGAAAACTGGCTTCAACCGCCAGCACC
ACACCACAACCTGGTACTTGGTAGCTTGGAAATGGCCTGTCCTCAGCCAT
TGGGGAAATGGAAGGCTTTGAGCGATACTCACAAAAATGTGCTGCTCACG
AGAGCGCCGGCACTACTGAAAAGTGTGTTTGGGCAACCCCCGGTTTCAAC
CAAGCCCTGTTGCCGCCCTTGGATCACTTCTGTCGGCCTGCTCGATGCTG
CCCCCGCTACGTCCATGTTACAGTTGCGTACAGCAGTCTCTGGAGTGGAG
TAGCGTGTCCAGAGTTGACCGACTCCGTTGTCTGCACCCCAACTGCGCCC
GCATCGTCTTTTCCCTCTGCCCGTTCGTCGATCCGTGACAGATGTGCCTG
TGCTCTTCCTTACCGGCTGAAGCCATGCCAACGTCTACTCGGTTCGTTAT
ATTGCAGCATCCCGCGGAAACTAAGAAGTGAGTTCGTCGTCTACGTTGTT
TGTTGATGCCAGTACCCGGAGAAAGCGCATCACCGCCCCTCACAGCTCAT
CAGGTTGTAAATCCGCCACCTCGTTCCTTCAGTGGTAGCCGAATATCGCC
CTTCACGGTATTTCTCCTGGTGCGCCGTCTGGGCTCGTAAAACGATTGCC
GAGGGAGGCTCGAACTCTCAAGAGCCGTCTTATTTTACGTTTTTGCATTT
TTTTTGCCCTCTTGTTCACCAGACGAGTCACCGGGACCGTCCCTCTGGTC
CTCCACTGCCTCGCCAACTGCACCCGCGTGGTCATGCGGTACGACTACAG
CGAGGAAGACCTCAGGAAAGCCCTCGGCGTCGAGGTGGCAAGGGATCGTT
CTCCGGAACGCGTCTCAGACAGTTCCTCGGAGCCGGAAAACAGCGCCAGC
GTACGCACTCCGCTTCTTCTCTACCCCTGCCCGGGCGCGGAATACCTTGA
GGTGAATTGGTGGCTGACGTTACCATCGGTGGTGACTGATGTGGTTTCCG
CTGCGTTGGGCGAATGGCACGTCATTCCGAAAGGGTCTGTTCTTTGTCGT
TTTCCGAAGAGTAAAGTGTTGTATTTCGTTACGTATATCCCCGTGGTACA
AGTTCATTTCGCCTAAGGACAGCATGCGAGGCGGGTGCGTGAGTGCAGAT
ACCGTGTATCTTGCGGTGAGCGTTCTGCGTCTTGCCACGTTCGTCCAAAG
CGGCTTGGGTCCCGGTTTGTCCACGACATGCAGCAGGATAGGCGGGCAGA
AGAACGAGAGCGTGTGAAATCGACAACGTTGTTAAGCATGGCACACCCCC
TCCTTGAAGAATGTTTATCGAGCACGCGGAAACGTTCTGTCATGCTCGTC
TCGCATTGCCGAGTTGTGGGTGGGACTGTCGTTCTGTAGGCGTGCCCACT
TTGTTTTCTGAAAATATTACGTGCCCGCAGTTGTCGTCGTTACATTAGTG
CGGCGGAGCAACCGGGTACTAGTTGTTTCACCTCTGAATCACGTTACCCG
GGGTAATAGGAAGAACATACGCTAGAAGTACTCAATTCCCTTGTTCGAAA
CACCGGTAGCTGCAACGTGGTGTGTTCCAGCGGTTCCACCCAACCGCACC
GATCGATATGTTCCCCTCTCTCTTCATGACAGGACATCGCCGCTTTCCGA
GAGCAACCTGCGCCGTCGACACAGCCGTTGCCATCGCCACGTCCGCCAGT
AACAACAGGGGTGGCGGCAATAGTCACACATGTCGATCCTTGGTCAGCTC
CGCCACCGCCGTCACCAGCGTCACAACTTCCTCGTTTGCCGGCAACGCCC
CGGTCGACGTCGTCACCGCACTCGGCTTCTTCTTCCTCTTCTGCGGAAGG
AGAAGCAGGAGCAGGAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CAGGAGCAGGAGCAGCAGCAACAGCAGGAGCAGGAGCAGGAGCAGGAGCA
GGAGCAGCAGCAGCGACAGCAGCAGGAGCAGCAGCAGGAGCAGCAGAAGA
AGCAGCAACAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGAGGTGGTGG
TACTCGTCGACGGCACCTGGTCGCAGGCGAAGCAGATCTTGTCCAGGTAC
CCCGCCCTCCTCCGCCGCCCGGGAACGGTCACCACGCCCGCCGGACAGAA
GGTTAGGGAATTGGGTGCCTCTGTTGGTGGCGTTTCCACCGCCACTGTTG
GGAGTTCAGTAGAGGCCGGAGGCGGTGGTAGTTGTGATGGGAGATGGAAT
GGGAGTGAGGGAGGGTCGGGGGGGAGGGAGGCGGGGCAAGGGGAGGAGGG
AGCGCTGTGCAGGGCGGTCAAGTTTCGGTGCGCGGGAGTCAGCGGCTACG
GCTTCAGGCGGGAGCCGGCGAAAGAATGCCTGTCCACCTTGGAAAGCGTT
GCCTACACGCTGGAGGTACGTTTTTCTCACGAAACAATGCGCGAGGCTTC
GCGCGTGTCTCTTCTGTGTGATCTCGTCAGCGAACCAGCGTTCATCGACT
GGCCCAAGGAAACGCTTCAGTCCCAACGTGTACGCGTAAATCTTGCTCTC
GTGCGTGTGTTTTCGCTTCGTCCCTGACACCGCGTTGCCGGTGTGTTACG
AAGAGTGAGAGACGTTGATGCAGTTCACCGATTGGCGTGTCGTCGATGAA
GAGGTTGCAATTCTCAGAGATCTTCACAGTTGAGGCGTACCCCCCTATCC
CCCAACAGCAGCTCGGAGTAGAAATGAAAGGGTCTAATGAATGAGACTCA
ATGATTCAATATATTTTTTTATAGGCCAATGGCTGAACGTTTAGCTACCC
ACTCATTGGAGACGACAGCTGTTTCTTCATCAGGCGCACAACTGCACTTT
CTCTTGCTGCTGTACGGTTTTTTGTATCACGGGTTTTGGAACAACCCATC
GTCCACTTTGTCCTGAGACGGACTTCAAACAAGTTTCTTGGGATGGTGCG
CATCGCTCTTGAGGGCACGAACACGTGTCATTCCTATAGGGTGGCCAACT
GCTACAAAGCCAGCGAGCCAGTTTCTCGCCCTTTCTCACCATCATCGAGG
AGGATGGGAGCGGGTGATGGCTTTGTACACACCAACTGCACGCAACCAAC
GTGGGTACGTTAAAATCTAACGAGGCTCCTGACATGTTGAGCACCCCCCC
GCATGGATGTGCCAGACTGAGTGGAGCTCATGCATGGGTGTAAATTTCAT
GGATTCCACGGGTGTGCGCGACCTGCAGGTACTGGAGGGGACCCCGCAAG
GGCTGGCAGCAGCAGCTTACCTCCGCAAGGCGTTCAAGGCGATGGTGTCG
ATGCAGCTCTCTCGGGCCGATGCGGGTGGCCGCCAGCCCCGATTTGTGAA
CCGAAAGGAGAGAACGACGAATCGGAGGTTGACACCGAAGAAGGGGTTCT
TTGAGACTCGGGCATCATCATTAAGCCCTGATGCTCGGAATTAGTTTATC
TGAATAGGATGTGAACTACGTAGTGCTGTAGGATTTGGTAGGTATATTCC
TCGGTCAAGGAGGGGACGGCGGGGGAGAAATATATCCCAACCACTAGTCA
CTGCTTTCTTGGAGGCGCACAACCCTCCTCCATCTGGCACGCCCAAGGTG
TAACGAGAGGTGTAGACCCAACCAGGCCTCACGAGCAAAGGGTGGTAGCT
GTAAAGGAGTAACCATTAATAGCAAAGGCAACCGGCGGACAAACCGTTTG
AGACATGCCTGGTACATGATTCTTCGAACGGCACGAAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1578:10329..14866-

>mRNA_E-fasciculatus_F_contig1578.3976.1 ID=mRNA_E-fasciculatus_F_contig1578.3976.1|Name=mRNA_E-fasciculatus_F_contig1578.3976.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2820bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1578:10329..14866- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCTTGGTCCGGTTGATGCTTGCGCTTGCCGCTCAGGCCGTAGCGGT
AGCGGGACAGAGATGCGGTGCACCGGAGCGCCTTCGAGGGCGTTCTTCAT
CATCGTCTGCGCTGCGGTTGCTGTTGCCGCCGCCTGGCTCTGCTGGCAGA
AGCTCAGATGCCTTGCTGTTCAGCTGCCCGACTACCCTTACCCCTTTCTT
GGCTGTGAGGCGAAGAAAGTCTCGCCGGGCGGCTTGCGCAGCCGGAGAGA
TCGGTGACGATACCGCACCATCACAGGCCGTCCAGTCGTACTACGAGCGC
AGGCGGGAGGCCATGGGCGCGTGGACGGAGGAGAGGCGAGGCAGGGACCT
GTGCGAGCGGTGTCGGAGGGCTCGAGAGATGATCTTGGTCCGGTTGATGC
TTGCGCTTGCCGCTCAGGCCGTAGCGGTAGCGGGACAGAGATGCGGTGCA
CCGGAGCGCCTTCGAGGGCGTTCTTCATCATCGTCTGCGCTGCGGTTGCT
GTTGCCGCCGCCTGGCTCTGCTGGCAGAAGCTCAGATGCCTTGCTGTTCA
GCTGCCCGACTACCCTTACCCCTTTCTTGGCTGTGAGGCGAAGAAAGTCT
CGCCGGGCGGCTTGCGCAGCCGGAGAGATCGGTGACGATACCGCACCATC
ACAGGCCGTCCAGTCGTACTACGAGCGCAGGCGGGAGGCCATGGGCGCGT
GGACGGAGGAGAGGCGAGGCAGGGACCTGTGCGAGCGGTGTCGGAGGGCT
CGAGAGATGTGCCTGTGCTCTTCCTTACCGGCTGAAGCCATGCCAACGTC
TACTCGGTTCGTTATATTGCAGCATCCCGCGGAAACTAAGAAATGTGCCT
GTGCTCTTCCTTACCGGCTGAAGCCATGCCAACGTCTACTCGGTTCGTTA
TATTGCAGCATCCCGCGGAAACTAAGAAACGAGTCACCGGGACCGTCCCT
CTGGTCCTCCACTGCCTCGCCAACTGCACCCGCGTGGTCATGCGGTACGA
CTACAGCGAGGAAGACCTCAGGAAAGCCCTCGGCGTCGAGGTGGCAAGGG
ATCGTTCTCCGGAACGCGTCTCAGACAGTTCCTCGGAGCCGGAAAACAGC
GCCAGCGTACGCACTCCGCTTCTTCTCTACCCCTGCCCGGGCGCGGAATA
CCTTGAGACGAGTCACCGGGACCGTCCCTCTGGTCCTCCACTGCCTCGCC
AACTGCACCCGCGTGGTCATGCGGTACGACTACAGCGAGGAAGACCTCAG
GAAAGCCCTCGGCGTCGAGGTGGCAAGGGATCGTTCTCCGGAACGCGTCT
CAGACAGTTCCTCGGAGCCGGAAAACAGCGCCAGCGTACGCACTCCGCTT
CTTCTCTACCCCTGCCCGGGCGCGGAATACCTTGAGGACATCGCCGCTTT
CCGAGAGCAACCTGCGCCGTCGACACAGCCGTTGCCATCGCCACGACATC
GCCGCTTTCCGAGAGCAACCTGCGCCGTCGACACAGCCGTTGCCATCGCC
ACCAGGAGCAGCAGCAGGAGCAGCAGAAGAAGCAGCAACAGGGGGGGGAG
GAGGAGGAGGAGGAGGAGGAGAGGTGGTGGTACTCGTCGACGGCACCTGG
TCGCAGGCGAAGCAGATCTTGTCCAGGTACCCCGCCCTCCTCCGCCGCCC
GGGAACGGTCACCACGCCCGCCGGACAGAAGGTTAGGGAATTGGGTGCCT
CTGTTGGTGGCGTTTCCACCGCCACTGTTGGGAGTTCAGTAGAGGCCGGA
GGCGGTGGTAGTTGTGATGGGAGATGGAATGGGAGTGAGGGAGGGTCGGG
GGGGAGGGAGGCGGGGCAAGGGGAGGAGGGAGCGCTGTGCAGGGCGGTCA
AGTTTCGGTGCGCGGGAGTCAGCGGCTACGGCTTCAGGCGGGAGCCGGCG
AAAGAATGCCTGTCCACCTTGGAAAGCGTTGCCTACACGCTGGAGCAGGA
GCAGCAGCAGGAGCAGCAGAAGAAGCAGCAACAGGGGGGGGAGGAGGAGG
AGGAGGAGGAGGAGAGGTGGTGGTACTCGTCGACGGCACCTGGTCGCAGG
CGAAGCAGATCTTGTCCAGGTACCCCGCCCTCCTCCGCCGCCCGGGAACG
GTCACCACGCCCGCCGGACAGAAGGTTAGGGAATTGGGTGCCTCTGTTGG
TGGCGTTTCCACCGCCACTGTTGGGAGTTCAGTAGAGGCCGGAGGCGGTG
GTAGTTGTGATGGGAGATGGAATGGGAGTGAGGGAGGGTCGGGGGGGAGG
GAGGCGGGGCAAGGGGAGGAGGGAGCGCTGTGCAGGGCGGTCAAGTTTCG
GTGCGCGGGAGTCAGCGGCTACGGCTTCAGGCGGGAGCCGGCGAAAGAAT
GCCTGTCCACCTTGGAAAGCGTTGCCTACACGCTGGAGGTACTGGAGGGG
ACCCCGCAAGGGCTGGCAGCAGCAGCTTACCTCCGCAAGGCGTTCAAGGC
GATGGTGTCGATGCAGCTCTCTCGGGCCGATGCGGGTGGCCGCCAGCCCC
GATTTGTGAACCGAAAGGAGAGAACGACGAATCGGAGGTTGACACCGAAG
AAGGGGTTCTTTGAGACTCGGGCATCATCATTAAGCCCTGATGCTCGGAA
TTAGGTACTGGAGGGGACCCCGCAAGGGCTGGCAGCAGCAGCTTACCTCC
GCAAGGCGTTCAAGGCGATGGTGTCGATGCAGCTCTCTCGGGCCGATGCG
GGTGGCCGCCAGCCCCGATTTGTGAACCGAAAGGAGAGAACGACGAATCG
GAGGTTGACACCGAAGAAGGGGTTCTTTGAGACTCGGGCATCATCATTAA
GCCCTGATGCTCGGAATTAG
back to top