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Homology
BLAST of mRNA_E-fasciculatus_F_contig15774.3972.1 vs. uniprot
Match: D7FVX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX0_ECTSI) HSP 1 Score: 361 bits (926), Expect = 1.310e-116 Identity = 233/303 (76.90%), Postives = 238/303 (78.55%), Query Frame = 1
Query: 67 MERPSSGRARQPVAMIVASRKALVXXXXXXXXXXXXXXXXXXXXAVCAAESQQRAHAFFISASPGGVHVSRGAAKRSSPRLQAEPSEEDDYSRLVRRMNRLERVMSDQNAEVEELRSSMEHMRMIIEIQARIDSCLVGEDGEDGLLLSSDLAGDTGREPDPWLVKQAIRLLRIRHRVLRAWEFDGEDLENNNEGDDEHGGGDTAVGFPSRRSGSGKSDSGRKPXXXXXXXXXXXXXXXXXXQSRMRTRDGRAFGFDNDEFFEYSMYDDTPVAGSGGRGEGVPGGG--RGESESRIDGGGVEAR 969
MER SSGR RQPV ++ASRKALV AVCAAESQQRAHAF ISA P GVH SRGAAKRSSPRLQAEPSEEDDYSRLVRR+NRLERV+SDQNAEVEELRSSMEHMRMIIEIQARIDSCLVGEDGEDGLLLSSDLAGDTGREPDPWLVKQAIRLLRIRHRVLRAWEFDGE LENNNEGD EH G XXXXXXXXXXXXXXXXXX +RMRTRDGRAFGFDNDEFFEYSMYDDTP AGSG RGEGVPG G ESESR DGG EAR
Sbjct: 1 MERKSSGRVRQPVVTMLASRKALVVRRRRRSRFTKGAFLLV---AVCAAESQQRAHAF-ISA-PSGVHASRGAAKRSSPRLQAEPSEEDDYSRLVRRINRLERVVSDQNAEVEELRSSMEHMRMIIEIQARIDSCLVGEDGEDGLLLSSDLAGDTGREPDPWLVKQAIRLLRIRHRVLRAWEFDGEGLENNNEGD-EHAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRMRTRDGRAFGFDNDEFFEYSMYDDTPAAGSGARGEGVPGDGGXXXESESRRDGGEFEAR 297
BLAST of mRNA_E-fasciculatus_F_contig15774.3972.1 vs. uniprot
Match: A0A6H5JJW2_9PHAE (DUF1995 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW2_9PHAE) HSP 1 Score: 253 bits (647), Expect = 1.230e-75 Identity = 156/188 (82.98%), Postives = 162/188 (86.17%), Query Frame = 1
Query: 421 MEHMRMIIEIQARIDSCLVGEDGEDGLLLSSDLAGDTGREPDPWLVKQAIRLLRIRHRVLRAWEFDGEDLENNNEGDDEHGGGDTAVGFPSRRSGSGKSDS---GRKPXXXXXXXXXXXXXXXXXXQSRMRTRDGRAFGFDNDEFFEYSMYDDTPVAGSGGRGEGVPG--GGRGESESRIDGGGVEAR 969
MEHMRMIIEIQARIDSCLVGEDGEDGLLLSSDLAGDTGREPDPWLVKQAIRLLRIRHRVLRAWEFDG++LEN N+GD EH GG+T VGFP RSG G D RKP XXXXXXXXXXXXXXXX SRMRTRDGRAFGFDNDEFFEYSMYDDTP AG G RG+GVPG GGRGES+S DGG EAR
Sbjct: 1 MEHMRMIIEIQARIDSCLVGEDGEDGLLLSSDLAGDTGREPDPWLVKQAIRLLRIRHRVLRAWEFDGDNLENINDGD-EHAGGETTVGFPPGRSGIGGGDGRSGSRKPSGXXXXXXXXXXXXXXXXXSRMRTRDGRAFGFDNDEFFEYSMYDDTPAAGPGARGDGVPGDGGGRGESKSGRDGGEFEAR 187
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 366.3 |
| Seed ortholog evalue | 1.5e-98 |
| Seed eggNOG ortholog | 2880.D7FVX0 |
| EggNOG OGs | 2CBGF@1,2SCME@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 970 |
| Cds size | 969 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15774.3972.1 >prot_E-fasciculatus_F_contig15774.3972.1 ID=prot_E-fasciculatus_F_contig15774.3972.1|Name=mRNA_E-fasciculatus_F_contig15774.3972.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=323bp
ERCGRAGQQTPRWAAAHPRPQQMERPSSGRARQPVAMIVASRKALVVPRR
RRRRRERFTKGALLLVAVCAAESQQRAHAFFISASPGGVHVSRGAAKRSS
PRLQAEPSEEDDYSRLVRRMNRLERVMSDQNAEVEELRSSMEHMRMIIEI
QARIDSCLVGEDGEDGLLLSSDLAGDTGREPDPWLVKQAIRLLRIRHRVL
RAWEFDGEDLENNNEGDDEHGGGDTAVGFPSRRSGSGKSDSGRKPSGGGG
AGGGSDEARRRRRQSRMRTRDGRAFGFDNDEFFEYSMYDDTPVAGSGGRG
EGVPGGGRGESESRIDGGGVEAR back to topmRNA from alignment at E-fasciculatus_F_contig15774:2..2844- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15774.3972.1 ID=mRNA_E-fasciculatus_F_contig15774.3972.1|Name=mRNA_E-fasciculatus_F_contig15774.3972.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2843bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15774:2..2844- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAGATGCGGGCGCGCGGGCCAGCAGACGCCGCGCTGGGCTGCTGCACA
CCCGCGCCCCCAACAGATGGAAAGGCCGAGCAGCGGGCGGGCGCGCCAGC
CGGTCGCTATGATAGTCGCTAGTCGGAAAGCACTGGTCGTGCCGCGGCGG
CGGCGGCGGCGAAGAGAAAGGTTTACGAAAGGAGCACTCTTGCTGGTGGC
GGTTTGCGCAGCCGAGTCCCAGCAACGCGCGCACGCCTTCTTCATCTCCG
CATCACCCGGCGGTGTTCATGTTTCGAGAGGAGGTGAGTGGGTGGCCGTT
GGGCAGTAGGCCTTGGTCTTCAGGTGCCGGGGCATGCTACGAGTTAATGG
CCACGAGGGTGCGCCTTGCGGAGCCACCTGGTTTTCTTCAAGGAGAGCGG
GACCAGATCGAACGTTAGGTTCGATAGGGGTACATTGCGCTGCGGGTGCA
TACAATACATGCTCATGCACGTACACCGTAAACGTTCTGTTTGTTTGTCC
GTGCCGACAGCAATAGTTCACGCCCACACTGCCGTTGTGCGGCAGAGCGG
CGGTCGACAACATCCGGTAAGGTACACCTTATTGTCCACAAACCCACATA
GCACCTTTTCTTTCTCTCTCTCTGGGTGACGGAGATGCCCCCCCAGACCC
AGCTGCTGCATGTCACCCGTGGCCCTTTCTGCTGTGCGCTCTCCCTGCAG
CTGCCAAGCGCTCCTCCCCTCGCCTGCAAGCCGAGCCATCGGAAGAAGAC
GACTATTCGCGCCTCGTGCGGAGAATGAACCGCCTGGAGAGGGTGATGTC
CGACCAGGTGAAGGGAGGTTTGCCGTAAGCTCGCCCCCGAAAGTCATTCC
TCCTTGGACAAACTCTGTACAAAAAACTCTGTAGGCAAGCACCGCAGCAG
CAAATGGTCCGCCGTAGGTGACACAAGATACCACACCCCCTGGATTGATT
CTCACAAGCCCGACCTGCCGTGCCGAAAGCGGCTGCGTTGGAACGATCTC
GTCGAGGCATTTACGGAACAGCATGAATTGAGTCTTGCACCCTCTTCTTC
GCGGAAGTTGTGCATGAATACGAGCTTTCAAAAATCGGTCCAGGGGGGGG
GGGGGGGTGGTATCTTGTGTCACCCACGGTACTCCGTAGTCTTTCGCCGA
GGTTGCTTGTACGCGGTGCCTGTTCGCAGCCTAGGCGTCTCTCCGCGAAC
CTGACGGCCGTATGTACGTTCTGCTGTGCTGTTGTCATGCACGTCAAAAA
CTGCGTGCAATTCACCCACATTCAATTACATGATCACTAATGCTGCTGGG
TCCATGATAGTTCTGTTTTGGTTACCGGAACCAGCAGCTAAATGCGCTAT
CGCTATCGGCCGTGAAAAAGATTTGGGTGCACGCACTCACCCCTTCGCAA
TACGTACACACCTGCTGCCCACCATGAGCACAACCACACCGTGTTGTTCT
ATTTTCTCACTTCCTTGACGAGTGGATGGAAATGACTTGAGGAAAGTCAC
CCAATCAGCGTATCAGACCCCTTTCTTTCATGGCACTTCTTCACACATGA
GACAGGCCCAGCGCCAGCTCCCTGGCTGCTCGCAGAAGCCCAACACATGT
TTCGGACGTCTTGCACGGAGTGGATCGGCGAGCAAACTCCAGAAGCCGTT
CCTTTCTTCTGTTGTTCGCGTTCGTCTTCGACCCTTTGTTGGCCGCAGAA
CGCAGAGGTGGAAGAACTGAGGTCGTCGATGGAGCACATGCGAATGATCA
TCGAGATCCAGGCGAGGATCGACTCCTGCCTGGTCGGCGAGGACGGCGAG
GACGGGCTACTGCTATCCTCAGACCTCGCGGGGGACACGGGCAGGGAGCC
AGACCCGTGGCTGGTAAAGCAGGCAATCAGGCTGCTGCGCATAAGGCACC
GGGTGCTGCGGGTAAGAAGGGGCCACGACGCCACGACGGCTCTGCCGTAC
GACGATACATGGCATGCTGGTGTTATTATCACAACTGCTGTTGCGATCCC
TTGGTGTCCGAGAACATGATCGGCCACCAGGTATCACATAGCGGGGATGT
ATTCTTTGTTTGCTTGCGTGACTCGGTGTGTACAGGCTTGCCGTGATTAT
GGGTTTCTTTCGTCATATCGCCTCCCCGATTTTCGCATTGACTGTTTGCT
CAGGCTGTAGCAACATATTGCTTTCGCCGAGGCACTTCACTGCTGCTGTT
GCTGTTGCTACTTGTGCTGCTGCTGCTGCTGCTGCTCGTCACCGTATCCA
TGTACATCTGTCTCTGGGAAAGGTTCGTCGTTCGACTCTTGTGGTTCGCC
CTTCCTCCCCTTCACCGCTGCCGCGTCTCTCGCCCTCTCCGTCCATCTCC
ATCTGTGATGACACAATTAAATAGCGCTTAGGCGAGCATGAACATTGTTT
CCACACACATTGCCTGCCCACTCTAAGTGTGACGCCTTGACGCCCCTCCC
TCCCCCCCCCGGTGCCCACCACCAAAGGCTTGGGAGTTCGACGGTGAGGA
CCTGGAAAATAACAACGAGGGCGACGACGAGCATGGCGGCGGAGACACGG
CGGTCGGGTTCCCCTCTAGAAGAAGCGGTAGTGGGAAGAGCGATAGCGGT
AGGAAACCCAGCGGAGGAGGCGGTGCTGGCGGGGGCAGCGACGAGGCGCG
GCGACGGCGTCGGCAGAGCCGAATGCGGACGCGCGACGGCCGTGCGTTCG
GCTTCGACAACGATGAGTTCTTTGAGTACAGCATGTACGACGACACGCCT
GTGGCTGGGTCCGGGGGCAGGGGAGAGGGAGTCCCCGGTGGCGGCAGGGG
GGAGAGTGAAAGCAGGATAGACGGGGGGGGGGTTGAAGCCAGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15774:2..2844- >mRNA_E-fasciculatus_F_contig15774.3972.1 ID=mRNA_E-fasciculatus_F_contig15774.3972.1|Name=mRNA_E-fasciculatus_F_contig15774.3972.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1938bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15774:2..2844- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAGATGCGGGCGCGCGGGCCAGCAGACGCCGCGCTGGGCTGCTGCACA
CCCGCGCCCCCAACAGATGGAAAGGCCGAGCAGCGGGCGGGCGCGCCAGC
CGGTCGCTATGATAGTCGCTAGTCGGAAAGCACTGGTCGTGCCGCGGCGG
CGGCGGCGGCGAAGAGAAAGGTTTACGAAAGGAGCACTCTTGCTGGTGGC
GGTTTGCGCAGCCGAGTCCCAGCAACGCGCGCACGCCTTCTTCATCTCCG
CATCACCCGGCGGTGTTCATGTTTCGAGAGGAGGAGAGATGCGGGCGCGC
GGGCCAGCAGACGCCGCGCTGGGCTGCTGCACACCCGCGCCCCCAACAGA
TGGAAAGGCCGAGCAGCGGGCGGGCGCGCCAGCCGGTCGCTATGATAGTC
GCTAGTCGGAAAGCACTGGTCGTGCCGCGGCGGCGGCGGCGGCGAAGAGA
AAGGTTTACGAAAGGAGCACTCTTGCTGGTGGCGGTTTGCGCAGCCGAGT
CCCAGCAACGCGCGCACGCCTTCTTCATCTCCGCATCACCCGGCGGTGTT
CATGTTTCGAGAGGAGCTGCCAAGCGCTCCTCCCCTCGCCTGCAAGCCGA
GCCATCGGAAGAAGACGACTATTCGCGCCTCGTGCGGAGAATGAACCGCC
TGGAGAGGGTGATGTCCGACCAGCTGCCAAGCGCTCCTCCCCTCGCCTGC
AAGCCGAGCCATCGGAAGAAGACGACTATTCGCGCCTCGTGCGGAGAATG
AACCGCCTGGAGAGGGTGATGTCCGACCAGAACGCAGAGGTGGAAGAACT
GAGGTCGTCGATGGAGCACATGCGAATGATCATCGAGATCCAGGCGAGGA
TCGACTCCTGCCTGGTCGGCGAGGACGGCGAGGACGGGCTACTGCTATCC
TCAGACCTCGCGGGGGACACGGGCAGGGAGCCAGACCCGTGGCTGGTAAA
GCAGGCAATCAGGCTGCTGCGCATAAGGCACCGGGTGCTGCGGAACGCAG
AGGTGGAAGAACTGAGGTCGTCGATGGAGCACATGCGAATGATCATCGAG
ATCCAGGCGAGGATCGACTCCTGCCTGGTCGGCGAGGACGGCGAGGACGG
GCTACTGCTATCCTCAGACCTCGCGGGGGACACGGGCAGGGAGCCAGACC
CGTGGCTGGTAAAGCAGGCAATCAGGCTGCTGCGCATAAGGCACCGGGTG
CTGCGGGCTTGGGAGTTCGACGGTGAGGACCTGGAAAATAACAACGAGGG
CGACGACGAGCATGGCGGCGGAGACACGGCGGTCGGGTTCCCCTCTAGAA
GAAGCGGTAGTGGGAAGAGCGATAGCGGTAGGAAACCCAGCGGAGGAGGC
GGTGCTGGCGGGGGCAGCGACGAGGCGCGGCGACGGCGTCGGCAGAGCCG
AATGCGGACGCGCGACGGCCGTGCGTTCGGCTTCGACAACGATGAGTTCT
TTGAGTACAGCATGTACGACGACACGCCTGTGGCTGGGTCCGGGGGCAGG
GGAGAGGGAGTCCCCGGTGGCGGCAGGGGGGAGAGTGAAAGCAGGATAGA
CGGGGGGGGGGTTGAAGCCAGGGCTTGGGAGTTCGACGGTGAGGACCTGG
AAAATAACAACGAGGGCGACGACGAGCATGGCGGCGGAGACACGGCGGTC
GGGTTCCCCTCTAGAAGAAGCGGTAGTGGGAAGAGCGATAGCGGTAGGAA
ACCCAGCGGAGGAGGCGGTGCTGGCGGGGGCAGCGACGAGGCGCGGCGAC
GGCGTCGGCAGAGCCGAATGCGGACGCGCGACGGCCGTGCGTTCGGCTTC
GACAACGATGAGTTCTTTGAGTACAGCATGTACGACGACACGCCTGTGGC
TGGGTCCGGGGGCAGGGGAGAGGGAGTCCCCGGTGGCGGCAGGGGGGAGA
GTGAAAGCAGGATAGACGGGGGGGGGGTTGAAGCCAGG back to top
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