mRNA_E-fasciculatus_F_contig15773.3971.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15773.3971.1
Unique NamemRNA_E-fasciculatus_F_contig15773.3971.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: D7FV25_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV25_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.650e-27
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1
Query:   25 NEFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSSI 183
            NEFLSD YNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALT S++
Sbjct:   29 NEFLSDTYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTDSTV 81          
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A6H5KNX9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX9_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.670e-27
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1
Query:   25 NEFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSSI 183
            NEFLSD YNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALT S++
Sbjct:   29 NEFLSDTYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTDSTV 81          
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A2EBM4_TRIVA (RING-type domain-containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2EBM4_TRIVA)

HSP 1 Score: 51.2 bits (121), Expect = 7.250e-6
Identity = 26/69 (37.68%), Postives = 34/69 (49.28%), Query Frame = 1
Query:   28 EFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSSIPQIRGSLRHSPKPDNCL 234
            E L D  + PCGH FCR CI++ L   + CP C  P   K++L   L        +G +   P PDN L
Sbjct:   84 EELHDPVSTPCGHVFCRRCIEEWLLRSDVCPYCNTPKMDKNSLLPILD-------QGHVEDRPDPDNSL 145          
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A8D3CUS1_SCOMX (RING-type domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3CUS1_SCOMX)

HSP 1 Score: 48.5 bits (114), Expect = 2.700e-5
Identity = 31/79 (39.24%), Postives = 37/79 (46.84%), Query Frame = 1
Query:   37 SDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLK----------MALTVSSIPQIRGSLRHSPKPDNCLSAV 243
            SD   LPCGHSFCRECI  +L  +  CP C      +D LK          M +T SS+   R     SPK   C S +
Sbjct:   32 SDPVILPCGHSFCRECISLSLKSQRQCPQCRADV-PEDDLKWRTRLSLWGLMTVTCSSLCGRRCFRSSSPKQSCCHSKM 109          
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A8C6WWH2_9GOBI (Uncharacterized protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6WWH2_9GOBI)

HSP 1 Score: 50.4 bits (119), Expect = 2.940e-5
Identity = 23/73 (31.51%), Postives = 41/73 (56.16%), Query Frame = 1
Query:   28 EFLSDAYNLPCGHSFCRECIDDALAE--RNSCPDCMNPAWQKDTLKMALTVSSIPQ-IRGSLRHSPKPDNCLS 237
            + L D   LPCGHS+CR+CI D   +  R+SCP C      +  L   +T++++ + ++ +   +P  D+C +
Sbjct:   14 DLLKDPVTLPCGHSYCRDCIQDHWGKQVRSSCPQCRQSFSPRPVLNRNITIAALVEDLKRTGLTAPPADHCYA 86          
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A8C6UJ20_9GOBI (RING-type domain-containing protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6UJ20_9GOBI)

HSP 1 Score: 48.1 bits (113), Expect = 3.000e-5
Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 1
Query:   28 EFLSDAYNLPCGHSFCRECIDDALAE--RNSCPDCMNPAWQKDTLKMALTVSSI 183
            + L D   LPCGHS+CR+CI D   +  R+SCP C      +  L   +T++++
Sbjct:   17 DLLKDPVTLPCGHSYCRDCIQDHWDQQVRSSCPQCRKSFCPRPVLNRNITIAAL 70          
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A3P9NAZ6_POERE (Nuclear factor 7, ovary-like n=5 Tax=Poecilia TaxID=8080 RepID=A0A3P9NAZ6_POERE)

HSP 1 Score: 50.1 bits (118), Expect = 4.030e-5
Identity = 26/72 (36.11%), Postives = 39/72 (54.17%), Query Frame = 1
Query:   37 SDAYNLPCGHSFCRECIDDALAERNSCPDCMNP-AWQKDTLKMALTVSSIPQ-IRGSLRHSPKPDNCLSAVC 246
            +D  NLPCGHSFCR+CI + LA +  CP C    A +   L  ++ + S+ +  +       +P   L+AVC
Sbjct:   20 TDPVNLPCGHSFCRQCISEVLATQQHCPVCGTAVALEAANLPTSIVLKSLAEKAKAKPDKGKQPTAELAAVC 91          
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A8C6UIB6_9GOBI (Uncharacterized protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6UIB6_9GOBI)

HSP 1 Score: 50.1 bits (118), Expect = 4.060e-5
Identity = 23/74 (31.08%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   28 EFLSDAYNLPCGHSFCRECIDDALAER--NSCPDCMNPAWQKDTLKMALTVSSIPQ-IRGSLRHSPKPDNCLSA 240
            + L D   LPCGHS+CR+CI D   ++  +SCP C      +  L   +T++++ + ++ +   +P  D+C +A
Sbjct:   16 DLLKDPVTLPCGHSYCRDCIQDHWDQQVMSSCPQCRQSFSPRPVLNRNITIAALVEDLKRTGLTAPPADHCYAA 89          
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A540MXU0_MALBA (RING-type domain-containing protein n=2 Tax=Malus TaxID=3749 RepID=A0A540MXU0_MALBA)

HSP 1 Score: 49.3 bits (116), Expect = 5.090e-5
Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 1
Query:   58 CGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSS 180
            CGH FC+ECID A+A ++ CP C +   ++DT+++ L  SS
Sbjct:  172 CGHIFCKECIDTAIATQHKCPTCRHKLRKRDTIRVYLPSSS 212          
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: M3D138_SPHMS (RING-type domain-containing protein n=1 Tax=Sphaerulina musiva (strain SO2202) TaxID=692275 RepID=M3D138_SPHMS)

HSP 1 Score: 48.1 bits (113), Expect = 5.450e-5
Identity = 25/77 (32.47%), Postives = 34/77 (44.16%), Query Frame = 1
Query:   13 LCRSNEFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSSIPQIRGSLRHSPKPDNCLSAV 243
            +C     +S A   PCGH FCR C+D      + CP C  P +Q       L   S  Q+R  L H P+   C + +
Sbjct:   16 ICFEPLLISCAIRTPCGHRFCRRCLDQWWDRSSLCPLCRQPLFQFPPAHAYLRYVS--QVRAQLSHDPEIFICFTDI 90          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FV25_ECTSI3.650e-2792.45RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KNX9_9PHAE3.670e-2792.45RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A2EBM4_TRIVA7.250e-637.68RING-type domain-containing protein n=1 Tax=Tricho... [more]
A0A8D3CUS1_SCOMX2.700e-539.24RING-type domain-containing protein n=1 Tax=Scopht... [more]
A0A8C6WWH2_9GOBI2.940e-531.51Uncharacterized protein n=1 Tax=Neogobius melanost... [more]
A0A8C6UJ20_9GOBI3.000e-537.04RING-type domain-containing protein n=1 Tax=Neogob... [more]
A0A3P9NAZ6_POERE4.030e-536.11Nuclear factor 7, ovary-like n=5 Tax=Poecilia TaxI... [more]
A0A8C6UIB6_9GOBI4.060e-531.08Uncharacterized protein n=1 Tax=Neogobius melanost... [more]
A0A540MXU0_MALBA5.090e-546.34RING-type domain-containing protein n=2 Tax=Malus ... [more]
M3D138_SPHMS5.450e-532.47RING-type domain-containing protein n=1 Tax=Sphaer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15773contigE-fasciculatus_F_contig15773:2607..2858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928047.6438332-CDS-E-fasciculatus_F_contig15773:2606..28581622928047.6438332-CDS-E-fasciculatus_F_contig15773:2606..2858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15773 2607..2858 +
1695995802.0622425-CDS-E-fasciculatus_F_contig15773:2606..28581695995802.0622425-CDS-E-fasciculatus_F_contig15773:2606..2858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15773 2607..2858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15773.3971.1prot_E-fasciculatus_F_contig15773.3971.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15773 2607..2858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15773.3971.1

>prot_E-fasciculatus_F_contig15773.3971.1 ID=prot_E-fasciculatus_F_contig15773.3971.1|Name=mRNA_E-fasciculatus_F_contig15773.3971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=84bp
MLLVLCRSNEFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKD
TLKMALTVSSIPQIRGSLRHSPKPDNCLSAVCC*
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mRNA from alignment at E-fasciculatus_F_contig15773:2607..2858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15773.3971.1 ID=mRNA_E-fasciculatus_F_contig15773.3971.1|Name=mRNA_E-fasciculatus_F_contig15773.3971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=252bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15773:2607..2858+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCTCGTCCTCTGCCGCAGCAACGAGTTTCTGAGCGACGCTTACAA CCTTCCATGCGGCCACAGCTTCTGCCGAGAGTGCATCGACGATGCCTTAG CCGAGAGGAACTCGTGCCCCGACTGCATGAACCCCGCGTGGCAAAAGGAT ACCCTCAAGATGGCTCTAACGGTGAGCAGCATTCCTCAAATCCGAGGCTC TTTGAGACACTCCCCGAAACCGGACAATTGCTTGTCTGCGGTTTGTTGTT AG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15773:2607..2858+

>mRNA_E-fasciculatus_F_contig15773.3971.1 ID=mRNA_E-fasciculatus_F_contig15773.3971.1|Name=mRNA_E-fasciculatus_F_contig15773.3971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15773:2607..2858+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCTCGTCCTCTGCCGCAGCAACGAGTTTCTGAGCGACGCTTACAA
CCTTCCATGCGGCCACAGCTTCTGCCGAGAGTGCATCGACGATGCCTTAG
CCGAGAGGAACTCGTGCCCCGACTGCATGAACCCCGCGTGGCAAAAGGAT
ACCCTCAAGATGGCTCTAACGGTGAGCAGCATTCCTCAAATCCGAGGCTC
TTTGAGACACTCCCCGAAACCGGACAATTGCTTGTCTGCGGTTTGTTGTT
AGATGCTGCTCGTCCTCTGCCGCAGCAACGAGTTTCTGAGCGACGCTTAC
AACCTTCCATGCGGCCACAGCTTCTGCCGAGAGTGCATCGACGATGCCTT
AGCCGAGAGGAACTCGTGCCCCGACTGCATGAACCCCGCGTGGCAAAAGG
ATACCCTCAAGATGGCTCTAACGGTGAGCAGCATTCCTCAAATCCGAGGC
TCTTTGAGACACTCCCCGAAACCGGACAATTGCTTGTCTGCGGTTTGTTG
TTAG
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