mRNA_E-fasciculatus_F_contig15760.3967.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15760.3967.1
Unique NamemRNA_E-fasciculatus_F_contig15760.3967.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15760.3967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15760contigE-fasciculatus_F_contig15760:837..1934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size371
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15760.3967.1prot_E-fasciculatus_F_contig15760.3967.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15760 837..1927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928045.3006797-CDS-E-fasciculatus_F_contig15760:836..8771622928045.3006797-CDS-E-fasciculatus_F_contig15760:836..877Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15760 837..877 -
1695995801.892759-CDS-E-fasciculatus_F_contig15760:836..8771695995801.892759-CDS-E-fasciculatus_F_contig15760:836..877Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15760 837..877 -
1622928046.4104252-CDS-E-fasciculatus_F_contig15760:1605..19271622928046.4104252-CDS-E-fasciculatus_F_contig15760:1605..1927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15760 1606..1927 -
1695995801.9016016-CDS-E-fasciculatus_F_contig15760:1605..19271695995801.9016016-CDS-E-fasciculatus_F_contig15760:1605..1927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15760 1606..1927 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928046.4238315-UTR-E-fasciculatus_F_contig15760:1927..19341622928046.4238315-UTR-E-fasciculatus_F_contig15760:1927..1934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15760 1928..1934 -
1695995801.9104762-UTR-E-fasciculatus_F_contig15760:1927..19341695995801.9104762-UTR-E-fasciculatus_F_contig15760:1927..1934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15760 1928..1934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15760.3967.1

>prot_E-fasciculatus_F_contig15760.3967.1 ID=prot_E-fasciculatus_F_contig15760.3967.1|Name=mRNA_E-fasciculatus_F_contig15760.3967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
MSMEQGLAEERAKDGARMGRFGQHELLAHFISVCGFNSLADVRVYETHIL
TSDVANPGLHTVLALTAEAIGILLAGGPFTDSNLTSKAMNRKLGDSGGAT
LNALGMGGVQVHPRVAVHPHD
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mRNA from alignment at E-fasciculatus_F_contig15760:837..1934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15760.3967.1 ID=mRNA_E-fasciculatus_F_contig15760.3967.1|Name=mRNA_E-fasciculatus_F_contig15760.3967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1098bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15760:837..1934- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTGGGGATGTCAATGGAACAGGGGCTCGCCGAGGAGCGTGCTAAAGACG
GTGCTCGGATGGGGAGGTTTGGCCAACATGAACTGCTCGCTCACTTCATC
TCCGTGTGCGGGTTCAACAGCTTGGCAGATGTCAGAGTCTACGAGACTCA
CATCTTGACGTCCGACGTAGCCAACCCTGGCTTGCACACGGTGCTCGCGC
TGACTGCGGAGGCGATCGGCATCCTCCTCGCCGGCGGCCCCTTCACCGAC
AGCAACCTTACTTCCAAAGCCATGAACAGGAAGCTCGGTGACTCCGGGGG
CGCAACCCTAAATGCCTTGGGGATGGGCGGTGAGTGTGTGTGTGTGTGTG
TGTATGCTTGTTGTGAGAATTGTGGAAGTAAAGGGCGAAAAACAACAGCA
GACAGTGCTCAAGGGCTAGGTATCTTGCACTCGAGTTTTGTTGTCGGGGT
GCTTTCTGCTTTCACCACACCATCCTCCCTCGCGTTCGCTTCACCCTAAC
CACACCTAGGATGATCGCCACAAGCAGTCTCCCGTGCATTTAAGCTCTTG
TCTTGCCCTTGCGTTGTTTTAAAGAGTGTGTTTTTCGTTATTAGCATCGA
CCGCGCTAACCCGGCCGACCAAACCGGAAAGACGCCGGTCTCTGGGCGGC
GAAAAACATGAATTGCTTCCTGCAGGGTTATCTAGAGCCTACGCTACCCT
ACATACAAAGAACAGAAGCCCTTCATTTTTTCCCCCTTTTTTTGATTTTG
GGTGCTGCTACTTTCTGGTAGTCCGTGCGCTTTCGGTCGCAACCTCGTGT
TTTTACCACAACTTCTCGTTGCCGGTATTCTGGTTAGGGTCCTTCCTGTG
TGGGTGGGTGGGTGGATGGGTGGGTTGGTGGGTGTATATATATTTTTTTT
TAATTTTACGATTTTCTTCGGTCTTATTGCCGAACCCAGACTTAATTGAG
ACGTACATCGCCGGGAAGGATAGAAGAGCCCTCTGTTGAAACCGGACTTA
TGCATGCACATGTTCTTGTTGTTTTGTGTGTGTGTGTTCCTCTGTGTCAT
TGTGCAGGTGTCCAGGTTCACCCTCGGGTGGCGGTGCACCCACACGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15760:837..1934-

>mRNA_E-fasciculatus_F_contig15760.3967.1 ID=mRNA_E-fasciculatus_F_contig15760.3967.1|Name=mRNA_E-fasciculatus_F_contig15760.3967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15760:837..1934- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAATGGAACAGGGGCTCGCCGAGGAGCGTGCTAAAGACGGTGCTCG
GATGGGGAGGTTTGGCCAACATGAACTGCTCGCTCACTTCATCTCCGTGT
GCGGGTTCAACAGCTTGGCAGATGTCAGAGTCTACGAGACTCACATCTTG
ACGTCCGACGTAGCCAACCCTGGCTTGCACACGGTGCTCGCGCTGACTGC
GGAGGCGATCGGCATCCTCCTCGCCGGCGGCCCCTTCACCGACAGCAACC
TTACTTCCAAAGCCATGAACAGGAAGCTCGGTGACTCCGGGGGCGCAACC
CTAAATGCCTTGGGGATGGGCGATGTCAATGGAACAGGGGCTCGCCGAGG
AGCGTGCTAAAGACGGTGCTCGGATGGGGAGGTTTGGCCAACATGAACTG
CTCGCTCACTTCATCTCCGTGTGCGGGTTCAACAGCTTGGCAGATGTCAG
AGTCTACGAGACTCACATCTTGACGTCCGACGTAGCCAACCCTGGCTTGC
ACACGGTGCTCGCGCTGACTGCGGAGGCGATCGGCATCCTCCTCGCCGGC
GGCCCCTTCACCGACAGCAACCTTACTTCCAAAGCCATGAACAGGAAGCT
CGGTGACTCCGGGGGCGCAACCCTAAATGCCTTGGGGATGGGCGGTGTCC
AGGTTCACCCTCGGGTGGCGGTGCACCCACACGACGTGTCCAGGTTCACC
CTCGGGTGGCGGTGCACCCACACGAC
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