mRNA_E-fasciculatus_F_contig1576.3965.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1576.3965.1 vs. uniprot
Match: D7FKL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL3_ECTSI) HSP 1 Score: 973 bits (2515), Expect = 0.000e+0 Identity = 751/1060 (70.85%), Postives = 781/1060 (73.68%), Query Frame = 2
Query: 263 MEIEKGLRLRRLEQVRQQSRQQAAAVREEYRRRQAENKRAALQESKRHFEDNRAAELLSLNQQLQAKLLEVGTAHRMAACSTLAKEGEEERLRAKRSVSAERRRNRNLSAATKRGAELREARRKSDLAQQRQEVWKDEGDDERLRAREAAAMQEAATAARRAREEFEAERLRQRAEKGGSVRTTQAPVVEVGPRLEDFKTSRVHASFVLKHGTTPGIRLMGVETAVGDPAKELERMEASEKEREAAEEEADYRAEERGQEAFMRCRNQRAAQDVEAELKRLSELDRRHRLRNGAAETNLAALREREIRRARFGKGQGRRGESVRVPGTEMTNLRERCPPSTGDLGQGAPGLAPEIDDSEWREWPSWWPTPXXXXXXXXXXXXXXXXXXXXXXXXXSC--SAWPYSGRAPGPMPPEQERLRLVRETRRRLVEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLDLEVRPFSAIRERHHLYPPQSVDPRAAGGIXXXXXXXXXXXXXXXXXXAQEEGVNQADQIPRVDEPVAASGVPGDEESALFGEGKQNEPDSGWDADSEGSAAAPSXXXXXXXXXXXX--DGIAGTAADLSQTPSLPQRRRPSPPAGAMATA--------GSSFVRSPTPLAQKEGNGREQEAAMEXXXXXXXXXAEARVXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------PSPPPS-SSVSVGVYNTPTAAIDGGQPSGARWSXXXXXXXXXXXXXXXXXXXXDPSPFGDGQGQVGAGAFSSEAATAEGARRRAGTAEDGIRNSGSAGGITRSPFKPVALRPRPSQPQAAPSAAG----AGGAFEATAPYSSIFSLRRQGVDERADGRVARSGDVRPPGLGSSIRTGRESVWTPRGTAAGAVPAAAAVGDAGLSVMAEPGSAGVMSPTLSLMPRRGVVGVRGEEG-AXXXXXXXXXXXXXXXGVDGGGVARGGTWGRGSEVGSSSTSTLPPLDQELTELLER 3319
MEIEKGLRLRRLEQVRQQSRQQAAAVREEYRRRQAENKRAALQESKRHFEDNRAAELLSLNQQLQAKLLEVGTAHRMAACSTLA+EGEEERLRAKRSVSAERRRNRNL AATKR ELREARR+SDLAQQRQEVWKDEGDDERLRAREAA MQEA AARRAREEFE+ERLRQRAEKGGSVRTTQAPVVEVGPRLEDFKTSRVHASFVLKHG+TPGI LMGVETAVGDP+KELER+EASEKERE AEEEA YRAEERGQEAFMRCRNQRAA+ VEAELKRLSELDR+HRLRNGAAETNLAALREREIRRARFG G GR GES+RVPGTEMTNLRER P+TGDLGQGAPGLAPEIDDSEWREWPSWWPTPXXXXXXXXXXXXXXXX XXXX SAWPYSGR PGPMPPEQERLRLVRETRR LVEAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ V A+ + V AA G+ XXXXXX V+QA++ D PVAASG PGDEESA F +GKQNEPDSGWDADSEGSAAAPS XXXXXXX +GIAGTAAD QTPSL Q+RRP P A+ATA GS F RSPTP A+ GNG EQ A ME AEAR XXXXXXXXXXXXXXXXXXXXXXXXXX PSP S SS++V V+NTPTAAIDGG+PSGAR PSPFGD QGQVGA EA TA ARRRAG E+G+RNSGS G I RSPFKPVALRPRPSQPQAA GGAFEATAPYSS FS RRQG DER D RVA GDV PPGL SIRTGRESVWTPRGTAA A A A+GDAG SVMAEPGSAGVMSPT LMPRRGVV VRGEEG A XXXXXXXXXXXXXX EVGSSSTSTLPPLDQELTELLER
Sbjct: 1 MEIEKGLRLRRLEQVRQQSRQQAAAVREEYRRRQAENKRAALQESKRHFEDNRAAELLSLNQQLQAKLLEVGTAHRMAACSTLAREGEEERLRAKRSVSAERRRNRNLLAATKRETELREARRESDLAQQRQEVWKDEGDDERLRAREAAVMQEAVAAARRAREEFESERLRQRAEKGGSVRTTQAPVVEVGPRLEDFKTSRVHASFVLKHGSTPGISLMGVETAVGDPSKELERLEASEKEREEAEEEAGYRAEERGQEAFMRCRNQRAARVVEAELKRLSELDRQHRLRNGAAETNLAALREREIRRARFG-GGGRGGESIRVPGTEMTNLRERRRPATGDLGQGAPGLAPEIDDSEWREWPSWWPTPXXXXXXXXXXXXXXXXHSSIPXXXXXXXSSAWPYSGRTPGPMPPEQERLRLVRETRRGLVEAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPYPGDSAAAG--------------------------------------------EVSVSGGGAVTGLFATA--EGVTASAATGVGGEQDVGXXXXXX----------VSQAEETLMADAPVAASGAPGDEESAFFSQGKQNEPDSGWDADSEGSAAAPSATPSGXXXXXXXXXNGIAGTAADSPQTPSL-QQRRPLAPTEAVATAELAAGFEQGSWFARSPTPSAEDGGNGGEQAAEMEAAAAAASA-AEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRANAAPPSPAQSASSIAVAVHNTPTAAIDGGKPSGARSGGESASGSGAEVEGAVEATTPAPSPFGDAQGQVGAEELCYEAVTAGAARRRAGMDENGVRNSGSTGVIARSPFKPVALRPRPSQPQAAAXXXXXXXXTGGAFEATAPYSSTFS-RRQGDDERTDSRVAGGGDVGPPGLSGSIRTGRESVWTPRGTAAVAAAAMGAMGDAGSSVMAEPGSAGVMSPTHPLMPRRGVVDVRGEEGPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVGSSSTSTLPPLDQELTELLER 1000
BLAST of mRNA_E-fasciculatus_F_contig1576.3965.1 vs. uniprot
Match: A0A6H5KKD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD4_9PHAE) HSP 1 Score: 927 bits (2396), Expect = 1.960e-292 Identity = 902/1687 (53.47%), Postives = 949/1687 (56.25%), Query Frame = 2
Query: 2699 RRRAGTAEDGIRNSGSAGGITRSPFKPVALRPRPSQPQAAPSAAGAGG---AFEATAPYSSIFSLRRQGVDERADGRVARSGDVRPPGLGSSIRTGRESVWTPRGTAAGAVPAAAAVGDAGLSVMAEPGSAGVMSPTLSLMPRRGVVGVRGEEGAXXXXXXXXXXXXXXXGV----DGGGVARGGTWGRGSEVGSSSTSTLPPLDQELTELLERHRRLDREAALLTRQAEADANRWDNDDNXXXXXXXTLSSSAPRSPSSPGDYYDAATASYSTRHGASSGSRGGDKDNGEQKGXXXXXXXXXXXXXXXXXXXXXXXXXXSWRFRTGLGVTGGGAGQTRLGAGXXXXXXXXXXXXXXXXXX---------------GADAASWDRELARTLSREGPAAPGWTSRWR-PGMPGSRAALGLWERAGGLD---EDESGVVEVSEGVSPRGDTVDTAPEVTEWARRIQASIESMNRLVDGFQLAGXXXXXXXXXXXXXXXXXXXSVTSPDSSMSGVQRRGDHDAALSSGGTADSASHATGSRSGGSRGVERVVXXXXXXXXXXXX-----SVSAYGLEGFASAQLGFRRGLEGL-----------------------------------------------------------GR---------------RPSPAEHLSANRSQERKGEDESSGGWEE--AKGEGAAGWE-----------TGXXXXXXGGIRPFVRSSLSSSSASSVMGRADAVLAEAARGIGLSSAGVVGYVSSLSSSTGSNS----LGPDLEAEIASLEALAESLQQRKMRFEPKPELLAQQQQELEEHRRAIRATSAVDXXXXXXRPSSSSDHNNSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSDHTSSSTSHLSPVHTMTTXXXXXXILLLPSRGSEDVDGGGHEVRRSVASDVDSNAGADSALAALEAFQAELEAREKEAARGXXXXXXXXXXXXXXGAPGLGTPPTPLGGSGXXXXXXXXXXXXXXRGDGERSSEGSEDMRLRTSDEWGHGLHHD-AGRXXXXXXXXXXXXXXXXXXXXXXXPESDNGLIERLLSLDTEAIRKHAAAVASPALAGDTSSGRAASFSSSYAYGGAXXXXXXXXXXXXXXXXXXXPGAGPGSIELGDTDERPPFGRPSAVEASNNDHHRAGFSLPRAAEVEG--KTSEDHPQQQEKGTWREEEGPRDTAVDAGGGHGGRGAGPAXXXXX-GGDQGSSSDHSAPYLA--------------------------------------------------------------------------------------------------TGPGTSTTGGSEWWRRGADGRYSESXXXXXXXXXXXXXXXXXXXXXXXHRSLERAEPQGPRESVRGASSGSEEEGLDSGDDRSGGIEAAATGARPPSPTGGVVGPLGGGEQVSPLAMTPQGTSGPLPNRRGSHHHPATQAQGTGDGEGGFFGSRGSTXXXXXXXXXXXXXXXXXXXXXXXXXXTLSRRRRWVDGLGDDDENDVDAGTDTAVVLSPSFTPATAARPFGAEGDHDGDGAAAVLAGGDGVVADTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDLSLDPDLLVETSQ 7087
+RRAG E+ +RNSGS GGITRSPFKPVALRPRPSQPQA AFEAT PYSSIF RRQG DER D RVA GDV PPGL IRTGRESVWTPRGTAAGA AAAVGDAG SVMAEPGSAG VRGEEG XXXXXXXXXXXXXX DGGGV R GT G SEVGSSSTSTLPPLDQELTELLER EAAL+TRQAEADANRWD+DD XX TLSS APRSPSSP D+Y AT SYS+ SSGS GDK+N EQK XXX WRF +G GV GG AGQ RLGAG XXXXXXXXXX GADA SWDRELARTLSREGPA PGWTSRWR P MPGSRAALGLWE AGGLD DE+GVVE++ VSP DTA EVTEWARRIQASIE+MNRLVDGFQLAG +VTSPDSSMSGV RR D DA L SG TADSASHAT SRS GSRGVER V XXXXXXXX S+SAYG EGFASAQ GFRRGLEGL GR RPS AEH SA+ S E AKG+GA W+ XXXXXX I+PFVRSSLSSSSASSVMGRADAVLAEAARGIGL LGPDLEAEIASLEALAESLQQRKMRFEPKP LL QQQQELEEHRRAIRATS RPS+S DH N XXXXXXXXXXX XXXXXXXXXXX L S HT+SS + + ILLLPSRG+E VDG HEVRRSVA+DVDSNAGADSALAALEAFQAELEAREKEA G APG GTP GG DEWGHG+H D AGR XXXXXXXXXXXX PESDNGLIERLLSLDTEAIRKHAAAVA+ G SS R SF SS+ GGA PGAGPG +EL DTDERPPFGRPS A ++DHHRA FS+PRAAE EG +T D+PQQQ++ T EEEGPRD VDAG G G GAGPA GG Q S SDHS + A GPG+STTGGSEWWRRGADGRYSES XXXXXXXXXXXXXXXXXX HRSL+RA P+GPR SV AS+GSEE+GLD G+D SGG E A TG PSPTGGVVGPLGGGE+VSPLAMTPQG SGPLPNRRGS H Q QGTGDGEGGFFGSR XXXXXXXXXXXXXXXXXXXX T SR RRW+DGLGDD TPATAARPFGA DGDGAAAVLA DG V TD A DLSLDP++LVET Q
Sbjct: 19 KRRAGINENDVRNSGSTGGITRSPFKPVALRPRPSQPQAXXXXXXXXXXXXAFEATTPYSSIFP-RRQGDDERTDSRVAGGGDVGPPGLSGGIRTGRESVWTPRGTAAGA---AAAVGDAGSSVMAEPGSAG---------------DVRGEEGPAXXXXXXXXXXXXXXXXXPSGDGGGVTREGTRGGESEVGSSSTSTLPPLDQELTELLER------EAALITRQAEADANRWDDDD----XXANTLSSRAPRSPSSP-DHY--ATDSYSSWR--SSGS--GDKENEEQK--RGSSEEGGDGFLVPPGTHQFGGXXXGWRFGSGPGVAGGRAGQIRLGAGSGGSAGTSXXXXXXXXXXXXXXXXXGASVVAPGGADAVSWDRELARTLSREGPAVPGWTSRWRQPAMPGSRAALGLWEGAGGLDVVERDEAGVVEIAGSVSPGDGAADTAQEVTEWARRIQASIENMNRLVDGFQLAGDGSSSTSRSEAAG------TVTSPDSSMSGVPRRDDGDA-LYSGVTADSASHATVSRSRGSRGVERAVVGAAXXXXXXXXXXXXXSLSAYGFEGFASAQQGFRRGLEGLVKSGVGGGGGASQTGFSSSRAGFGSGSATCTLPPGEPAAXXXXXXXGGSDVGGTSASGVGRTSRSFSPPALEGVDGRPSTAEHHSADGSHEXXXXXXXXXXXXXXXAKGDGAVRWKGXXXXXXXXXXXXXXXXXXXXIKPFVRSSLSSSSASSVMGRADAVLAEAARGIGLXXXXXXXXXXXXXXXXXXXXXXXXLGPDLEAEIASLEALAESLQQRKMRFEPKPALLVQQQQELEEHRRAIRATSVAGSLSSNSRPSAS-DHTN-----------------------XXXXXXXXXXXTSSWSSXXXXXXXXXXXSSRLSSGHTNSSNNSNN-------------ILLLPSRGNEGVDGS-HEVRRSVATDVDSNAGADSALAALEAFQAELEAREKEATAGGEGRSAPPVPPR---APGQGTPXXXPGGC--------------------------------VGDEWGHGVHDDDAGRPRTPRPXXXXXXXXXXXXT----PESDNGLIERLLSLDTEAIRKHAAAVAAGG-DGCGSSSRGPSFPSSH--GGAAVGGYADGRDAA-------PGAGPGPVELRDTDERPPFGRPSEA-AVDDDHHRAVFSVPRAAEAEGGGETILDNPQQQQQETRLEEEGPRDIGVDAGDGRCG-GAGPAAAATTEGGGQASGSDHSVSFNAGAGPGSSTXXXXXXXXXGADGRYSXXXXXXXXXXXXXXXXXXXXXXXXETRLEEEGPRDAAVDAGDGRCGGAGPAAAXXXXXXXQASGSDLSVSFNAGAGPGSSTTGGSEWWRRGADGRYSESETXXXXXXXXXXXXXXXXXX---HRSLQRAAPRGPRHSVHAASTGSEEKGLDGGEDSSGGGETAETGFMLPSPTGGVVGPLGGGEEVSPLAMTPQGASGPLPNRRGSRRH--HQPQGTGDGEGGFFGSR----XXXXXXXXXXXXXXXXXXXXATENRTPSRGRRWIDGLGDDXXXXXXXXXXXXXXXXXXHTPATAARPFGANEGDDGDGAAAVLA--DGAVPGTDPRRRNDAVDTAARPPAASPRSSEAASLFDGSSSPSPSP--------ASDLSLDPEILVETRQ 1552
BLAST of mRNA_E-fasciculatus_F_contig1576.3965.1 vs. uniprot
Match: D7FKL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL2_ECTSI) HSP 1 Score: 266 bits (679), Expect = 2.290e-69 Identity = 225/334 (67.37%), Postives = 237/334 (70.96%), Query Frame = 2
Query: 3857 MPGSRAALGLWERAGGLDEDESGVVEVSEGVSPRGDTVDTAPEVTEWARRIQASIESMNRLVDGFQLAGXXXXXXXXXXXXXXXXXXXSVTSPDSSMSGVQRRGDHDAALSSGGTADSASHATGSRSGGSRGVERVVXXXXXXXXXXXXSVSAYGLEGFASAQLGFRRGLEGLGRRPSPAEHLSANRSQE--RKGEDESSGGWEEAKGEGAAGWETGXXXXXXGG-----IRPFVRSSLSSSSASSVMGRADAVLAEAARGIGLSSAGVVG----YVSSLSSSTGSNSLGPDLEAEIASLEALAESLQQRKMRFEPKPELLAQQQQELEEHRRA 4825
MPGSRAALGLWERAGGLD DE+GVVE + GVSPRG TVDTA EVTEWARRIQASIESMNRLVDGFQLAGXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXS+SAYGLEGFASAQLGFRR ++G RP PAEH +A+RSQE RKGED SSGGWEEAKGEGA WE G G I+ FVRSSLSSSSASSVMGRADAVLAEAARGIGL SA VG SSLSSSTGS+SLGPDLEAEIASLEALAESLQQRKMRFEPK QQ+ ++HR A
Sbjct: 1 MPGSRAALGLWERAGGLDGDEAGVVETAGGVSPRGGTVDTAQEVTEWARRIQASIESMNRLVDGFQLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSAYGLEGFASAQLGFRR-VDG---RPGPAEHRAADRSQEEKRKGEDASSGGWEEAKGEGAVRWEAGDGIVGASGXXXXXIKSFVRSSLSSSSASSVMGRADAVLAEAARGIGLGSAASVGGGSYRSSSLSSSTGSHSLGPDLEAEIASLEALAESLQQRKMRFEPK-------QQQQQQHRPA 321 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1576.3965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1576.3965.1 >prot_E-fasciculatus_F_contig1576.3965.1 ID=prot_E-fasciculatus_F_contig1576.3965.1|Name=mRNA_E-fasciculatus_F_contig1576.3965.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=2356bp MFGSSRGTRAHAGVGGRPSQGEGRMGSGAGGRAASSTGVAGGAARRDSGTback to top mRNA from alignment at E-fasciculatus_F_contig1576:532..17312+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1576.3965.1 ID=mRNA_E-fasciculatus_F_contig1576.3965.1|Name=mRNA_E-fasciculatus_F_contig1576.3965.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=16781bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1576:532..17312+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1576:532..17312+ >mRNA_E-fasciculatus_F_contig1576.3965.1 ID=mRNA_E-fasciculatus_F_contig1576.3965.1|Name=mRNA_E-fasciculatus_F_contig1576.3965.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=14136bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1576:532..17312+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |