mRNA_E-fasciculatus_F_contig15739.3958.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15739.3958.1
Unique NamemRNA_E-fasciculatus_F_contig15739.3958.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15739.3958.1 vs. uniprot
Match: A0A6H5LE38_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE38_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 4.900e-36
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:    1 RNNSLSTLHAVSALLPVLVLELLVTLAYACVCVVLYHGVKDAPFTTLGSAFMNLFALSTTVNDPDVWMPLYN 216
            RNNSLSTLHAVSALLPVLVLELLVTLAYAC CVVLYHGVKDAPFTTLGSAFMNLFALSTTVNDPDVWMPLY+
Sbjct:  676 RNNSLSTLHAVSALLPVLVLELLVTLAYACGCVVLYHGVKDAPFTTLGSAFMNLFALSTTVNDPDVWMPLYD 747
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BLAST of mRNA_E-fasciculatus_F_contig15739.3958.1 vs. uniprot
Match: A0A6U4FCQ8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FCQ8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.750e-11
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   58 LELLVTLAYACVCVVLYHGVKDAPFTTLGSAFMNLFALSTTVNDPDVWMPLY 213
            +EL + L +AC CV  +  V D+ F  L   F+NLFALSTTVNDPDVW+PLY
Sbjct:  210 MELYLALVFACACVAFFGTVPDSGFNELSDGFVNLFALSTTVNDPDVWLPLY 261
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BLAST of mRNA_E-fasciculatus_F_contig15739.3958.1 vs. uniprot
Match: A0A7R9U3R5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3R5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.240e-10
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 RNNSLSTLHAVSALLPVLVLELLVTLAYACVCVVLYHGVKDAPFTTLGSAFMNLFALSTTVNDPDVWMPLY 213
            R+++ + L  +  +L ++ LEL +TL +AC CV  +  V ++ F  L  AF+N+FAL+TTVN+PDVW+ LY
Sbjct:  134 RDSTRNILIMLPIVLAIVGLELFLTLVFACACVAFFGPVPESGFYLLSDAFINIFALATTVNNPDVWLGLY 204
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BLAST of mRNA_E-fasciculatus_F_contig15739.3958.1 vs. uniprot
Match: A0A7S2WCP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCP3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.870e-9
Identity = 28/55 (50.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   58 LELLVTLAYACVCVVLYHGVK--DAPFTTLGSAFMNLFALSTTVNDPDVWMPLYN 216
            +EL + +A++C+ + L+ GV   +  F TLG AF++L+ALSTTVNDPDVW+PL++
Sbjct:  153 MELFLLVAFSCMALTLFGGVARGEGAFGTLGGAFISLYALSTTVNDPDVWLPLFD 207
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BLAST of mRNA_E-fasciculatus_F_contig15739.3958.1 vs. uniprot
Match: D8LFM4_ECTSI (Similar to two-pore calcium channel [Arabidopsis thaliana] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM4_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 5.460e-6
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:  139 LGSAFMNLFALSTTVNDPDVWMPLYN 216
            L +AFMNLFALSTTVNDPDVWMPLY+
Sbjct:  306 LYNAFMNLFALSTTVNDPDVWMPLYD 331
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BLAST of mRNA_E-fasciculatus_F_contig15739.3958.1 vs. uniprot
Match: K8YQT3_NANGC (Two-pore calcium channel n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQT3_NANGC)

HSP 1 Score: 51.2 bits (121), Expect = 1.020e-5
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    1 RNNSLSTLHAVSALLPVLVLELLVTLAYACVCVVLYHGV------KDAPFTTLGSAFMNLFALSTTVNDPDVWMPLY 213
            RN  L  L  V +++  + +E L  L +AC  V+LY  V      +   F +L  AF++L+ LS TVNDPD+++P Y
Sbjct:  279 RNAMLDYLRTVPSVIQWIGIEFLSVLVFACFAVILYASVDRGGASEQTAFLSLNRAFISLYELSLTVNDPDIYLPYY 355
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BLAST of mRNA_E-fasciculatus_F_contig15739.3958.1 vs. uniprot
Match: A0A448ZR52_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZR52_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.600e-5
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   40 LLPVLVLELLVTLAYACVCVVLYHGVKDAPFTTLGSAFMNLFALSTTVNDPDVWMPLYN 216
            LL V+++E+ + L +A V   LY+      F TL  A+++LFALSTTV +P +WMP YN
Sbjct:  258 LLRVILIEMFLILTFAAVACRLYYNYDS--FQTLPQAWLSLFALSTTVVNPSIWMPAYN 314
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15739.3958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5LE38_9PHAE4.900e-3697.22EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6U4FCQ8_9STRA2.750e-1157.69Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U3R5_9STRA6.240e-1043.66Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WCP3_9STRA1.870e-950.91Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D8LFM4_ECTSI5.460e-688.46Similar to two-pore calcium channel [Arabidopsis t... [more]
K8YQT3_NANGC1.020e-537.66Two-pore calcium channel n=3 Tax=Monodopsidaceae T... [more]
A0A448ZR52_9STRA2.600e-545.76Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15739contigE-fasciculatus_F_contig15739:2038..2253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog description2 domain calcium channel. Fragment
Ec32 orthologEc-04_001620.1
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.9744182-CDS-E-fasciculatus_F_contig15739:2037..22531622928043.9744182-CDS-E-fasciculatus_F_contig15739:2037..2253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15739 2038..2253 +
1695995801.3028255-CDS-E-fasciculatus_F_contig15739:2037..22531695995801.3028255-CDS-E-fasciculatus_F_contig15739:2037..2253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15739 2038..2253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15739.3958.1prot_E-fasciculatus_F_contig15739.3958.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15739 2038..2253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15739.3958.1

>prot_E-fasciculatus_F_contig15739.3958.1 ID=prot_E-fasciculatus_F_contig15739.3958.1|Name=mRNA_E-fasciculatus_F_contig15739.3958.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
RNNSLSTLHAVSALLPVLVLELLVTLAYACVCVVLYHGVKDAPFTTLGSA
FMNLFALSTTVNDPDVWMPLYN
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mRNA from alignment at E-fasciculatus_F_contig15739:2038..2253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15739.3958.1 ID=mRNA_E-fasciculatus_F_contig15739.3958.1|Name=mRNA_E-fasciculatus_F_contig15739.3958.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15739:2038..2253+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGAACAACTCCCTCTCCACCCTCCACGCGGTGAGCGCGCTGCTGCCGGT
CCTCGTGCTGGAGCTGCTGGTGACCCTGGCCTACGCTTGCGTGTGCGTGG
TTCTCTACCATGGCGTGAAGGACGCCCCGTTTACCACCCTCGGCAGCGCG
TTCATGAACCTCTTCGCGCTCTCCACGACGGTCAACGACCCCGACGTGTG
GATGCCGCTCTACAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15739:2038..2253+

>mRNA_E-fasciculatus_F_contig15739.3958.1 ID=mRNA_E-fasciculatus_F_contig15739.3958.1|Name=mRNA_E-fasciculatus_F_contig15739.3958.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15739:2038..2253+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGAACAACTCCCTCTCCACCCTCCACGCGGTGAGCGCGCTGCTGCCGGT
CCTCGTGCTGGAGCTGCTGGTGACCCTGGCCTACGCTTGCGTGTGCGTGG
TTCTCTACCATGGCGTGAAGGACGCCCCGTTTACCACCCTCGGCAGCGCG
TTCATGAACCTCTTCGCGCTCTCCACGACGGTCAACGACCCCGACGTGTG
GATGCCGCTCTACAACCGGAACAACTCCCTCTCCACCCTCCACGCGGTGA
GCGCGCTGCTGCCGGTCCTCGTGCTGGAGCTGCTGGTGACCCTGGCCTAC
GCTTGCGTGTGCGTGGTTCTCTACCATGGCGTGAAGGACGCCCCGTTTAC
CACCCTCGGCAGCGCGTTCATGAACCTCTTCGCGCTCTCCACGACGGTCA
ACGACCCCGACGTGTGGATGCCGCTCTACAAC
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