mRNA_E-fasciculatus_F_contig1573.3956.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1573.3956.1
Unique NamemRNA_E-fasciculatus_F_contig1573.3956.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1573.3956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1573contigE-fasciculatus_F_contig1573:8033..8603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1573.3956.1prot_E-fasciculatus_F_contig1573.3956.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1573 8058..8489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.7838423-UTR-E-fasciculatus_F_contig1573:8032..80571622928043.7838423-UTR-E-fasciculatus_F_contig1573:8032..8057Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1573 8033..8057 +
1695995801.2275503-UTR-E-fasciculatus_F_contig1573:8032..80571695995801.2275503-UTR-E-fasciculatus_F_contig1573:8032..8057Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1573 8033..8057 +
1622928043.8255143-UTR-E-fasciculatus_F_contig1573:8489..86031622928043.8255143-UTR-E-fasciculatus_F_contig1573:8489..8603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1573 8490..8603 +
1695995801.2445803-UTR-E-fasciculatus_F_contig1573:8489..86031695995801.2445803-UTR-E-fasciculatus_F_contig1573:8489..8603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1573 8490..8603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.8097367-CDS-E-fasciculatus_F_contig1573:8057..84891622928043.8097367-CDS-E-fasciculatus_F_contig1573:8057..8489Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1573 8058..8489 +
1695995801.236016-CDS-E-fasciculatus_F_contig1573:8057..84891695995801.236016-CDS-E-fasciculatus_F_contig1573:8057..8489Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1573 8058..8489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1573.3956.1

>prot_E-fasciculatus_F_contig1573.3956.1 ID=prot_E-fasciculatus_F_contig1573.3956.1|Name=mRNA_E-fasciculatus_F_contig1573.3956.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=144bp
MHTVSFVCGAMCHESFIKPMSENLSDVSSRRLTDVSGGGRVRDKLGQSSM
LAAKTCGNLQLPKTRSTASFHLVRSGDHDTDCSVLLRHEACSAETCLDTT
TLLCINHNTQKTSTCMEIHQPLVVRWALGEGQTQRQERSMHPS*
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mRNA from alignment at E-fasciculatus_F_contig1573:8033..8603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1573.3956.1 ID=mRNA_E-fasciculatus_F_contig1573.3956.1|Name=mRNA_E-fasciculatus_F_contig1573.3956.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=571bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1573:8033..8603+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCGTGCGAGGTTAAGCACCCGGTATGCATACTGTTTCGTTTGTGTGTG
GTGCGATGTGCCACGAGTCTTTTATAAAACCGATGAGTGAAAACCTTTCG
GACGTTTCCTCCAGGCGACTCACGGACGTCTCGGGGGGGGGGAGAGTCAG
GGACAAATTGGGGCAATCATCGATGCTTGCGGCTAAAACATGTGGAAATT
TGCAATTGCCGAAAACAAGATCGACTGCGTCTTTCCATCTCGTTCGAAGT
GGCGATCACGACACTGACTGTAGTGTTCTTTTACGCCACGAAGCCTGCTC
GGCCGAAACGTGTTTGGACACAACCACTCTCCTGTGCATCAACCATAACA
CGCAGAAAACCAGCACTTGCATGGAAATACATCAACCGCTCGTGGTGCGA
TGGGCTCTGGGCGAAGGGCAGACACAACGTCAAGAGCGCAGCATGCATCC
ATCTTAACAAATCTTCAGAGTGGGCTCAAGATACCTTTCAGATTGTTGTA
GACTAGCCTCAGCTTCACCACTCGGCCATCGCGGTTGACTTGCACTCCGT
ACCATCGCGAGAGGTCAGCAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1573:8033..8603+

>mRNA_E-fasciculatus_F_contig1573.3956.1 ID=mRNA_E-fasciculatus_F_contig1573.3956.1|Name=mRNA_E-fasciculatus_F_contig1573.3956.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1573:8033..8603+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATACTGTTTCGTTTGTGTGTGGTGCGATGTGCCACGAGTCTTTTAT
AAAACCGATGAGTGAAAACCTTTCGGACGTTTCCTCCAGGCGACTCACGG
ACGTCTCGGGGGGGGGGAGAGTCAGGGACAAATTGGGGCAATCATCGATG
CTTGCGGCTAAAACATGTGGAAATTTGCAATTGCCGAAAACAAGATCGAC
TGCGTCTTTCCATCTCGTTCGAAGTGGCGATCACGACACTGACTGTAGTG
TTCTTTTACGCCACGAAGCCTGCTCGGCCGAAACGTGTTTGGACACAACC
ACTCTCCTGTGCATCAACCATAACACGCAGAAAACCAGCACTTGCATGGA
AATACATCAACCGCTCGTGGTGCGATGGGCTCTGGGCGAAGGGCAGACAC
AACGTCAAGAGCGCAGCATGCATCCATCTTAAATGCATACTGTTTCGTTT
GTGTGTGGTGCGATGTGCCACGAGTCTTTTATAAAACCGATGAGTGAAAA
CCTTTCGGACGTTTCCTCCAGGCGACTCACGGACGTCTCGGGGGGGGGGA
GAGTCAGGGACAAATTGGGGCAATCATCGATGCTTGCGGCTAAAACATGT
GGAAATTTGCAATTGCCGAAAACAAGATCGACTGCGTCTTTCCATCTCGT
TCGAAGTGGCGATCACGACACTGACTGTAGTGTTCTTTTACGCCACGAAG
CCTGCTCGGCCGAAACGTGTTTGGACACAACCACTCTCCTGTGCATCAAC
CATAACACGCAGAAAACCAGCACTTGCATGGAAATACATCAACCGCTCGT
GGTGCGATGGGCTCTGGGCGAAGGGCAGACACAACGTCAAGAGCGCAGCA
TGCATCCATCTTAA
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