mRNA_E-fasciculatus_F_contig157.3938.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: D8LIT3_ECTSI (Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIT3_ECTSI) HSP 1 Score: 408 bits (1049), Expect = 3.410e-132 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 2
Query: 419 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV 1027
MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV
Sbjct: 1 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV 203
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: F0Y2Q0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Q0_AURAN) HSP 1 Score: 233 bits (594), Expect = 9.830e-67 Identity = 110/196 (56.12%), Postives = 149/196 (76.02%), Query Frame = 2
Query: 431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDA-QVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAEC 1015
LFKYIIIG+T VGKS+I+L FTE+ F+ AHDMTIGVEF ++ V + D Q LEIWDTAGQES+LSITRSYYRGTD CLLV+D+T R+SF+ LPRWL+EA+ N++NP+L +ML+ NKADL R ++ EG+AFAD HG+LF+E++A+N VE F+ +A+R+ + A+PR K + ++L+PE + F C
Sbjct: 12 LFKYIIIGDTEVGKSSIMLMFTEQHFQQAHDMTIGVEFDSRSVQLSDGNQANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLPRWLNEAKQNASNPNLVLMLVGNKADLEGSRQISRAEGKAFADLHGMLFVELTAKNQNLVESVFVESAQRVLAVQRANPRAKSAAVKLQPESRAKKDDFDCGC 207
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A8J2S4D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4D0_9STRA) HSP 1 Score: 222 bits (565), Expect = 9.320e-63 Identity = 110/196 (56.12%), Postives = 140/196 (71.43%), Query Frame = 2
Query: 431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSI-GDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAEC 1015
LFKYIIIG+T VGKS+++L FTER F +AHDMTIGVEF ++ V + G LEIWDTAGQES+LSITRSYYRGTD CLLV+D+T R+SF+ L RWL EAR N+ANPDL +ML+ NKADL KR ++ EG+AFAD HG+LF+E+SA+N VE F+ +A+R+ + +PR + I L T C
Sbjct: 11 LFKYIIIGDTEVGKSSLMLMFTERHFGEAHDMTIGVEFDSRAVKLAGGEAANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLGRWLQEARQNAANPDLVLMLVGNKADLESKRQISRAEGKAFADLHGMLFVELSAKNEKLVESVFVESAQRVLNVRRDNPRQRGPNIALAQPSRRTTDYDYCGC 206
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A7R9A5U8_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A5U8_9CRUS) HSP 1 Score: 220 bits (560), Expect = 5.490e-62 Identity = 109/186 (58.60%), Postives = 143/186 (76.88%), Query Frame = 2
Query: 431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPE 979
LFKYIIIG+T VGKS +LLQFT+++F+ HD+TIGVEFGA+ ++I D Q+KL+IWDTAGQE+F SITRSYYRG G LLV+DIT R +F L +WLD+AR +S N ++ +MLI NK+DL +R V EEG+AFA +HGL+FME SA+ AA VE AFI TA+ I+ L+ P N+ +GI+L P+
Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIEDKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRDTFNHLTQWLDDARQHS-NSNMVIMLIGNKSDLESRRDVKKEEGEAFAREHGLIFMETSAKTAANVEEAFISTAKEIYMKLQEGVFDPNNEANGIKLGPQ 190
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: S4REH2_PETMA (RAB2B, member RAS oncogene family n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4REH2_PETMA) HSP 1 Score: 219 bits (557), Expect = 1.720e-61 Identity = 109/191 (57.07%), Postives = 144/191 (75.39%), Query Frame = 2
Query: 431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPEEMSAT 994
LFKYIIIG+T VGKS +LLQFT+++F+ HD+TIGVEFGA+ ++IG QVKL+IWDTAGQESF SITRSYYRG G LLV+DIT R +F L WL++AR +S N ++ +MLI NK+DL +R V EEG+AFA +HGL+FME SA+ AA VE AFI TA I+ ++ N+ +GI++ P+++ AT
Sbjct: 11 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIAIGGKQVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTAWLEDARQHS-NSNMVIMLIGNKSDLESRREVKCEEGEAFAREHGLVFMETSAKTAANVEEAFINTAREIYEKIQEGVFDVNNEANGIKIGPQQLGAT 200
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: D7FSF1_ECTSI (Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF1_ECTSI) HSP 1 Score: 218 bits (555), Expect = 2.260e-61 Identity = 112/204 (54.90%), Postives = 148/204 (72.55%), Query Frame = 2
Query: 431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPEEMS-----ATSRFKAECC 1018
LFKYIIIG+T VGKS +LLQFT+++F+ HD+TIGVEFGA+ +SI + Q+KL+IWDTAGQESF SITRSYYRG G LLV+DIT R +F L RWL+EAR NS N ++ +MLI NK+DL +R VTT+EG+ FA+++GL+F+E SA+ A VE AFI TA +I+ ++ + P N+ GI+L P A K+ CC
Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNS-NSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSSCC 208
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A7S2CHD5_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CHD5_9STRA) HSP 1 Score: 218 bits (555), Expect = 2.330e-61 Identity = 113/205 (55.12%), Postives = 152/205 (74.15%), Query Frame = 2
Query: 431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLK------PEEMSATSRFKAECC 1018
LFKYIIIG+T VGKS +LLQFT+++F+ HD+TIGVEFGA+ V+I + Q+KL+IWDTAGQESF SITRSYYRG G LLV+DIT R +F L RWL+EA+ NS NP++ +MLI NK+DL +R V+T+EG+ FA+++GL+F+E SA+ AA VE+AFI TAE+I+ + + N+ GI++ P+ S S KA CC
Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEAKQNS-NPNMVIMLIGNKSDLDHRRAVSTKEGEQFAEENGLIFLETSAKTAANVEQAFIKTAEKIYEKILSGVYDVTNEAHGIKIGMNQHSGPDNNSGRSSNKA-CC 208
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A5B8MXK9_9CHLO (Small rab-like GTPase n=2 Tax=Chlorophyta TaxID=3041 RepID=A0A5B8MXK9_9CHLO) HSP 1 Score: 218 bits (555), Expect = 2.660e-61 Identity = 105/168 (62.50%), Postives = 135/168 (80.36%), Query Frame = 2
Query: 431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 934
LFKYIIIG+T VGKS +LLQFT+++F+ HD+TIGVEFGA+ V+I Q+KL+IWDTAGQESF SITRSYYRG G LLV+DIT R++F +L WLD+AR + AN ++++MLI NK+DL +R VTTEEG+AFA +HGL+FME SA+ A VE AFI TA +I+ +E
Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNSLASWLDDARQH-ANANMTIMLIGNKSDLTHRRAVTTEEGEAFAKEHGLVFMETSAKTAHNVEEAFINTARKIYDKIE 172
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A7S3C719_9CHLO (Hypothetical protein n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C719_9CHLO) HSP 1 Score: 218 bits (555), Expect = 2.660e-61 Identity = 105/168 (62.50%), Postives = 135/168 (80.36%), Query Frame = 2
Query: 431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 934
LFKYIIIG+T VGKS +LLQFT+++F+ HD+TIGVEFGA+ V+I Q+KL+IWDTAGQESF SITRSYYRG G LLV+DIT R++F +L WLD+AR + AN ++++MLI NK+DL +R VTTEEG+AFA +HGL+FME SA+ A VE AFI TA +I+ +E
Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNSLASWLDDARQH-ANANMTIMLIGNKSDLTHRRAVTTEEGEAFAKEHGLVFMETSAKTAHNVEEAFINTARKIYDKIE 172
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A835Z1V8_9STRA (Rab2A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V8_9STRA) HSP 1 Score: 218 bits (554), Expect = 3.520e-61 Identity = 106/185 (57.30%), Postives = 144/185 (77.84%), Query Frame = 2
Query: 431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKP 976
LFKYIIIG+T VGKS +LLQFT+++F+ HD+TIGVEFGA+ +++ Q+KL+IWDTAGQESF SITRSYYRG G LLV+DIT R +F L RWL+EAR NS N ++ +MLI NK+DL +R V+T+EG+ FA ++GL+F+E SA+ AA VE AFI TAE+I+ ++++ P N+ G++L P
Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPLHDLTIGVEFGARMINVDARQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNS-NSNMVIMLIGNKSDLEHRRAVSTKEGEQFAAENGLIFLETSAKTAANVEAAFIQTAEKIYGNIQSGVYDPTNEAHGVKLGP 189 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig157.3938.1 >prot_E-fasciculatus_F_contig157.3938.1 ID=prot_E-fasciculatus_F_contig157.3938.1|Name=mRNA_E-fasciculatus_F_contig157.3938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=204bp MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGback to top mRNA from alignment at E-fasciculatus_F_contig157:19221..27115- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig157.3938.1 ID=mRNA_E-fasciculatus_F_contig157.3938.1|Name=mRNA_E-fasciculatus_F_contig157.3938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7895bp|location=Sequence derived from alignment at E-fasciculatus_F_contig157:19221..27115- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig157:19221..27115- >mRNA_E-fasciculatus_F_contig157.3938.1 ID=mRNA_E-fasciculatus_F_contig157.3938.1|Name=mRNA_E-fasciculatus_F_contig157.3938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-fasciculatus_F_contig157:19221..27115- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |