mRNA_E-fasciculatus_F_contig157.3937.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig157.3937.1
Unique NamemRNA_E-fasciculatus_F_contig157.3937.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig157.3937.1 vs. uniprot
Match: A0A6H5K5Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y6_9PHAE)

HSP 1 Score: 400 bits (1028), Expect = 1.840e-137
Identity = 215/244 (88.11%), Postives = 222/244 (90.98%), Query Frame = 1 
Query:  193 IMHGLGQAITAAATAAAVATTTSAFVVAPAALRDGTTLRASLDAPRGWACSHETASAYSSGCLRRSGVREGRGGCTMMMMSGPPPGKGKFVKMGGTEDAQSFGPRCILASGLSLEERGAIRSILDDEDQDREDRTPLVMQSSEIAEKRVGDVLTDAPMIGLLQEKQEEARDASSEPSSPVILISGFTNPELRDFVTRFRSETGVRAAFAKAVPNAMTKSVAKLCGEIAQDHADALAGKLSGGTE 924
            +MH LGQ ITAAATA    TTTSAFVVAPAALRDGT L ASLD+PRGWAC+HETA+AYSSGCLRRSG  EG GG   MMMSGPPPG+GKFVKMGGTEDAQSFGPRCILASGLSLEERGAIRSILDDEDQDREDRTP V  + EIAEKRVGDVLTDAPMIGLLQEKQE ARDAS EPSSPVILISGFTNPELRDFVTRFRSETGVRAAFAKAVPNAMTKSVA+LCGEIAQDHADALAGKLS G E
Sbjct:    1 MMHRLGQIITAAATAXXXXTTTSAFVVAPAALRDGTRLSASLDSPRGWACNHETAAAYSSGCLRRSGACEGGGGRITMMMSGPPPGRGKFVKMGGTEDAQSFGPRCILASGLSLEERGAIRSILDDEDQDREDRTPFVAHTLEIAEKRVGDVLTDAPMIGLLQEKQE-ARDASPEPSSPVILISGFTNPELRDFVTRFRSETGVRAAFAKAVPNAMTKSVARLCGEIAQDHADALAGKLSSGKE 243
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BLAST of mRNA_E-fasciculatus_F_contig157.3937.1 vs. uniprot
Match: D8LIT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT4_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 6.770e-86
Identity = 140/152 (92.11%), Postives = 143/152 (94.08%), Query Frame = 1 
Query:  469 MGGTEDAQSFGPRCILASGLSLEERGAIRSILDDEDQDREDRTPLVMQSSEIAEKRVGDVLTDAPMIGLLQEKQEEARDASSEPSSPVILISGFTNPELRDFVTRFRSETGVRAAFAKAVPNAMTKSVAKLCGEIAQDHADALAGKLSGGTE 924
            MGGTEDAQSFGPRCILASGLSLEER AIRSILDD+DQDREDRTPLV  + EIAEKRVGDVLTDAPMIGLLQEKQEEARDAS EPSSPVILISGFTNPELRDFVTRFRSETGV AAFAKAVPNAMTKSVA+LC EIAQDHADALAGKLS G E
Sbjct:    1 MGGTEDAQSFGPRCILASGLSLEERRAIRSILDDKDQDREDRTPLVAHNLEIAEKRVGDVLTDAPMIGLLQEKQEEARDASPEPSSPVILISGFTNPELRDFVTRFRSETGVGAAFAKAVPNAMTKSVARLCEEIAQDHADALAGKLSDGKE 152
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig157.3937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5Y6_9PHAE1.840e-13788.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIT4_ECTSI6.770e-8692.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig157contigE-fasciculatus_F_contig157:15398..18132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionUncharacterised conserved protein UCP014543
Ec32 orthologEc-20_001430.1
Exons4
Model size1130
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig157.3937.1prot_E-fasciculatus_F_contig157.3937.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig157 15601..17937 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928041.4586923-UTR-E-fasciculatus_F_contig157:15397..156001622928041.4586923-UTR-E-fasciculatus_F_contig157:15397..15600Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig157 15398..15600 -
1695995800.2450922-UTR-E-fasciculatus_F_contig157:15397..156001695995800.2450922-UTR-E-fasciculatus_F_contig157:15397..15600Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig157 15398..15600 -
1622928041.526075-UTR-E-fasciculatus_F_contig157:17937..181321622928041.526075-UTR-E-fasciculatus_F_contig157:17937..18132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig157 17938..18132 -
1695995800.2916949-UTR-E-fasciculatus_F_contig157:17937..181321695995800.2916949-UTR-E-fasciculatus_F_contig157:17937..18132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig157 17938..18132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928041.4712114-CDS-E-fasciculatus_F_contig157:15600..157451622928041.4712114-CDS-E-fasciculatus_F_contig157:15600..15745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 15601..15745 -
1695995800.2553818-CDS-E-fasciculatus_F_contig157:15600..157451695995800.2553818-CDS-E-fasciculatus_F_contig157:15600..15745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 15601..15745 -
1622928041.483746-CDS-E-fasciculatus_F_contig157:16188..162891622928041.483746-CDS-E-fasciculatus_F_contig157:16188..16289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 16189..16289 -
1695995800.264363-CDS-E-fasciculatus_F_contig157:16188..162891695995800.264363-CDS-E-fasciculatus_F_contig157:16188..16289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 16189..16289 -
1622928041.4955392-CDS-E-fasciculatus_F_contig157:16700..168751622928041.4955392-CDS-E-fasciculatus_F_contig157:16700..16875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 16701..16875 -
1695995800.2732563-CDS-E-fasciculatus_F_contig157:16700..168751695995800.2732563-CDS-E-fasciculatus_F_contig157:16700..16875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 16701..16875 -
1622928041.5127823-CDS-E-fasciculatus_F_contig157:17626..179371622928041.5127823-CDS-E-fasciculatus_F_contig157:17626..17937Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 17627..17937 -
1695995800.2819889-CDS-E-fasciculatus_F_contig157:17626..179371695995800.2819889-CDS-E-fasciculatus_F_contig157:17626..17937Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 17627..17937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig157.3937.1

>prot_E-fasciculatus_F_contig157.3937.1 ID=prot_E-fasciculatus_F_contig157.3937.1|Name=mRNA_E-fasciculatus_F_contig157.3937.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=244bp
MHGLGQAITAAATAAAVATTTSAFVVAPAALRDGTTLRASLDAPRGWACS
HETASAYSSGCLRRSGVREGRGGCTMMMMSGPPPGKGKFVKMGGTEDAQS
FGPRCILASGLSLEERGAIRSILDDEDQDREDRTPLVMQSSEIAEKRVGD
VLTDAPMIGLLQEKQEEARDASSEPSSPVILISGFTNPELRDFVTRFRSE
TGVRAAFAKAVPNAMTKSVAKLCGEIAQDHADALAGKLSGGTE*
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mRNA from alignment at E-fasciculatus_F_contig157:15398..18132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig157.3937.1 ID=mRNA_E-fasciculatus_F_contig157.3937.1|Name=mRNA_E-fasciculatus_F_contig157.3937.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2735bp|location=Sequence derived from alignment at E-fasciculatus_F_contig157:15398..18132- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCATGTTGTAGGCTCGTGACTCGTGACGACGGCAGCAAGGCCACACCAC
CGAGCAATAGCGACGGCTGTCCGTACGTGGCAGGGCGTGGTACAAGGGTA
GGGTTTGTTTTTTGTGAATAACAAGCACGTACAGCAGTAGCCATCGCCGT
GCTTGCCGGAACCGGGGGTTGGAGGTTGCGGGGAAAATTCACATCATGCA
TGGGCTGGGCCAAGCCATCACTGCTGCTGCTACTGCTGCTGCGGTGGCAA
CTACAACCTCTGCGTTCGTTGTCGCCCCAGCAGCACTACGTGATGGAACA
ACGCTAAGGGCTTCTCTCGATGCTCCTCGAGGATGGGCTTGTAGTCATGA
GACAGCATCGGCATACAGCAGCGGTTGCCTTCGGAGGTCAGGCGTGCGTG
AAGGACGCGGTGGGTGCACCATGATGATGATGTCTGGCCCACCGCCAGGC
AAAGGGAAGTTCGTCAAGATGGGAGGGACAGAGGACGCGCAGAGCTTCGG
GCCAAGGTAAAGCTATACTTGGGAAGTCGGCGCGACAACGTCGTGAGTTC
CACAGCAGTGCGGTGATGGTAGATAGAACCTCAACTTTCAAATTTGGCTT
GTAGTGCCAGCCGGACGGGTTACAAGTCAGTTTGCATCCGTAGTGTTATG
AGCATTGTTTGTCTCAGCAGAACAGAGAGCCGGGGCGCACACCTTGAATA
CAAGCACTTATGGCCTTGCACCGAGGCAGCTTAGTAGTACGTTTTTCGTC
GATTCTGTTGGACAAATAACGCACAGGGTAGCGGCAGTGCTTGGGCACCA
CAAAATTTACGGAAATACACAGTATTCACCATATTAATTACCAGTTAGAG
AGCAGCACACATATATCGCAATAGCTTGGGAGAGGGGATGGAGGGACTTC
TCCTGGTCTTTCGAAACCTTCTCGTGTAACGACCAACCTAACTACACTAT
GAAGGTCTTCTCGCTGACGAGAAGGCCAACAATTTGGGTGCGCACTCAAA
TGCACTTGAACAAAACTAAGAGAGTCCTGAGCCGCACACCCCCTTGACCG
CTGTCCATCCATGCTGTGACTACTGCTGTGACCAATCCCGTTGGCCGACT
CGGATATAGACTACAGCTTTTCGCAAACCACCCTAGGAGTACCTCAGGCC
CTGCAAAACTACCAGAGGACCGCGTATTGAGCAACCACGCGCCATCTGTG
GAGATTCCGTGGAATACAACACTGAAGTTTTGTCGTCGCTTGCTCTCGGG
TATTCAGGTGTATTCTCGCAAGTGGCCTTTCCCTGGAGGAGCGCGGGGCA
ATACGCTCGATTCTTGACGACGAGGATCAAGACCGGGAGGACAGAACGCC
TTTGGTGATGCAAAGCTCGGAAATAGCGGAGAAGAGGGTGGGAGACGTCC
TGACCGATGCACCGATGATTGGTCTGCTTCAGGTATCGACAAAGGGGTGT
CCAAGGCAATTTGTTTTGCACTGCAGCACGCAGTTTTGTTGCACCTCTTC
GCGTAGACTCAACACATCGCCACCCAGCAGGAAACAGGACTCTTCCGCAT
CCGTCTTCCAGACCAGGTATCCTGGTTTGCATGTGCATGTGATGCTCGTG
TTTCCTCATGCTCTCCGCAAGGGAGATGCCCTGAGAACTCGACAACGATT
TTGCGATTGCGGACGGCATATGTACCCGCGAAGTCATGCTGGAAGATGAC
ATTGTGGTCAACCAAACCGACCTCAGCTTCACTCAGAACCGTATGTTGTC
GAGTCTGGTAGACATTCTGTAGATCCAGAATCACTTCCGCGGTTGTCGCT
ACCTCCCCACCCGTAATCCCTGCCGTTGTCTGTGAATGCCCAGGAGAAAC
AAGAAGAGGCCAGGGATGCCTCGTCAGAACCGTCTTCGCCGGTGATTCTG
ATCAGCGGTTTCACCAACCCAGAACTGAGGGACTTCGTCACACGGTAGGG
AACCAATGTTTTCATACGTTACGCATACCGTTTTTGGTTTGGCGCTGGGG
CATATATCCGAACTTTTGTTGCTTTCTGTAGGGTCGTGGTCGTGGTGTTG
GGGTTTCCAGCTCCCGGTAAAAGCAGGCTACATATTGGTGTTCTCGGTGT
TTCGTCAAAAACGATCCGACGTACAGTTCGCACGTGGCAACACCCGGAAC
TGTTGATTTCAATCCATGGCGGAGGTAAGGGCGTGTAGTTTGAATGAATG
TGTCGGGTGTGTCTGGGCCACAGTTCACGCGCGACGATGTAATGAGGGAG
GCAAATGCGTCGTGTCACTACTTTTGGGTCTGCAAGCGCCACCTTCGTGC
ATGGAAGAAACATGCTTTCAAGGTAATGTCCGCCTCCTCTGTTCGCCAAT
TGCCGGTCAATGGGTTGTTTGGGTACTGCCGCAACAGGTTTCGCAGTGAA
ACGGGGGTTCGCGCTGCATTTGCCAAGGCTGTGCCAAACGCCATGACGAA
GTCGGTGGCTAAATTGTGCGGGGAGATTGCTCAAGATCACGCTGATGCTC
TCGCGGGCAAGCTGTCCGGCGGGACAGAATGAACGATTAGAAGAGCGTGG
ACGTCGTACAAGTTGATACCATCTGAAATTTAGAAGTTAGAAGACCTCTG
AGCGCGCAACACAAGTCAACCGAGTTTACTGTGGAAGTGTGACCACACCT
CCCAAAGCTTTCGCGAAGCCAGTTTCATGCGGACACGTAAACATGAAGGT
GTCATGAGCGCTTCGGCGGGTTGGGAGACTACGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig157:15398..18132-

>mRNA_E-fasciculatus_F_contig157.3937.1 ID=mRNA_E-fasciculatus_F_contig157.3937.1|Name=mRNA_E-fasciculatus_F_contig157.3937.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig157:15398..18132- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATGGGCTGGGCCAAGCCATCACTGCTGCTGCTACTGCTGCTGCGGT
GGCAACTACAACCTCTGCGTTCGTTGTCGCCCCAGCAGCACTACGTGATG
GAACAACGCTAAGGGCTTCTCTCGATGCTCCTCGAGGATGGGCTTGTAGT
CATGAGACAGCATCGGCATACAGCAGCGGTTGCCTTCGGAGGTCAGGCGT
GCGTGAAGGACGCGGTGGGTGCACCATGATGATGATGTCTGGCCCACCGC
CAGGCAAAGGGAAGTTCGTCAAGATGGGAGGGACAGAGGACGCGCAGAGC
TTCGGGCCAAGATGCATGGGCTGGGCCAAGCCATCACTGCTGCTGCTACT
GCTGCTGCGGTGGCAACTACAACCTCTGCGTTCGTTGTCGCCCCAGCAGC
ACTACGTGATGGAACAACGCTAAGGGCTTCTCTCGATGCTCCTCGAGGAT
GGGCTTGTAGTCATGAGACAGCATCGGCATACAGCAGCGGTTGCCTTCGG
AGGTCAGGCGTGCGTGAAGGACGCGGTGGGTGCACCATGATGATGATGTC
TGGCCCACCGCCAGGCAAAGGGAAGTTCGTCAAGATGGGAGGGACAGAGG
ACGCGCAGAGCTTCGGGCCAAGGTGTATTCTCGCAAGTGGCCTTTCCCTG
GAGGAGCGCGGGGCAATACGCTCGATTCTTGACGACGAGGATCAAGACCG
GGAGGACAGAACGCCTTTGGTGATGCAAAGCTCGGAAATAGCGGAGAAGA
GGGTGGGAGACGTCCTGACCGATGCACCGATGATTGGTCTGCTTCAGGTG
TATTCTCGCAAGTGGCCTTTCCCTGGAGGAGCGCGGGGCAATACGCTCGA
TTCTTGACGACGAGGATCAAGACCGGGAGGACAGAACGCCTTTGGTGATG
CAAAGCTCGGAAATAGCGGAGAAGAGGGTGGGAGACGTCCTGACCGATGC
ACCGATGATTGGTCTGCTTCAGGAGAAACAAGAAGAGGCCAGGGATGCCT
CGTCAGAACCGTCTTCGCCGGTGATTCTGATCAGCGGTTTCACCAACCCA
GAACTGAGGGACTTCGTCACACGGAGAAACAAGAAGAGGCCAGGGATGCC
TCGTCAGAACCGTCTTCGCCGGTGATTCTGATCAGCGGTTTCACCAACCC
AGAACTGAGGGACTTCGTCACACGGTTTCGCAGTGAAACGGGGGTTCGCG
CTGCATTTGCCAAGGCTGTGCCAAACGCCATGACGAAGTCGGTGGCTAAA
TTGTGCGGGGAGATTGCTCAAGATCACGCTGATGCTCTCGCGGGCAAGCT
GTCCGGCGGGACAGAATGAGTTTCGCAGTGAAACGGGGGTTCGCGCTGCA
TTTGCCAAGGCTGTGCCAAACGCCATGACGAAGTCGGTGGCTAAATTGTG
CGGGGAGATTGCTCAAGATCACGCTGATGCTCTCGCGGGCAAGCTGTCCG
GCGGGACAGAATGA
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