mRNA_E-fasciculatus_F_contig1564.3911.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1564.3911.1
Unique NamemRNA_E-fasciculatus_F_contig1564.3911.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1564.3911.1 vs. uniprot
Match: D8LS27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS27_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 9.090e-26
Identity = 65/136 (47.79%), Postives = 80/136 (58.82%), Query Frame = 2 
Query:    2 LANDLVLLAGLDVDLRTGLGGNTPLHVAALEG---ILTTWCLASCSG------GRTKMLSTSQARHH*CTHPGGMSTREWTMGQHLSCTAWFTRSDSVRALLERGASLKEEDNDGNMALHNLCRIRREGVAAVVDL 382
            L NDL LLAGLD++L TG GGNTPLH+AALEG   + ++  L           G+T ++  S+A     T P             L   AWF+R D V ALLERGASL  ED+DGN AL N+CR + +GVA VVDL
Sbjct:    2 LVNDLFLLAGLDLNLGTGSGGNTPLHLAALEGMDELASSLLLREADEDALSVLGKTPLMRASRANDG--TTP-------------LMSAAWFSRRDPVLALLERGASLTGEDSDGNAALRNVCRKKYKGVAVVVDL 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1564.3911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS27_ECTSI9.090e-2647.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1564contigE-fasciculatus_F_contig1564:10757..11381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_001890.1
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928037.7329726-CDS-E-fasciculatus_F_contig1564:10757..109451622928037.7329726-CDS-E-fasciculatus_F_contig1564:10757..10945Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1564 10758..10945 -
1695995798.4485745-CDS-E-fasciculatus_F_contig1564:10757..109451695995798.4485745-CDS-E-fasciculatus_F_contig1564:10757..10945Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1564 10758..10945 -
1622928037.7500093-CDS-E-fasciculatus_F_contig1564:11185..113811622928037.7500093-CDS-E-fasciculatus_F_contig1564:11185..11381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1564 11186..11381 -
1695995798.461031-CDS-E-fasciculatus_F_contig1564:11185..113811695995798.461031-CDS-E-fasciculatus_F_contig1564:11185..11381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1564 11186..11381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1564.3911.1prot_E-fasciculatus_F_contig1564.3911.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1564 10758..11381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1564.3911.1

>prot_E-fasciculatus_F_contig1564.3911.1 ID=prot_E-fasciculatus_F_contig1564.3911.1|Name=mRNA_E-fasciculatus_F_contig1564.3911.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=128bp
ARERPRIIGGIGCGLENWIGGKYASPCGCSRRHIDDLVSSLLLRGADKDA
LNVASKTPLMHASRRDVNARMDDGTTPLMYGVVHQERFRACPLGARRFLE
RGRQRRKYGTAQFVPYQARRRRGGGGPP
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mRNA from alignment at E-fasciculatus_F_contig1564:10757..11381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1564.3911.1 ID=mRNA_E-fasciculatus_F_contig1564.3911.1|Name=mRNA_E-fasciculatus_F_contig1564.3911.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=625bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1564:10757..11381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTCGCGAACGACCTCGTATTATTGGCGGGATTGGATGTGGACTTGAGAA
CTGGATTGGGGGGAAATACGCCTCTCCATGTGGCTGCTCTCGAAGGCATA
TTGACGACTTGGTGTCTAGCCTCTTGCTCAGGGGGGCGGACAAAGATGCT
CTCAACGTCGCAAGCAAGACACCACTGATGCACGCATCCAGGCGGGGTCA
CTTGGCTGTCGTGCATACTCTGATGGCTGCTGGTGCAGATGCCACCCTCT
CGGTCCCGTTCGGTCGCTCGGCCCTCAGATTGGCCGCCAGTTATGGACAC
GTGGACGTGCTAGAAGCTATGGTCGAACATGGGGTGGACGTGAACGCCCG
CGGCGATCATGACAAGACCGCGCTTCACATCGCTGCCCACCGCGATGGGG
CGCGTGCCGTAGACGCACTGATCGAGGTAGGGGCAGATGTCAACGCGAGA
ATGGACGATGGGACAACACCTCTCATGTACGGCGTGGTTCACCAGGAGCG
ATTCCGTGCGTGCCCTCTTGGAGCGCGGCGCTTCCTTGAAAGAGGAAGAC
AACGACGGAAATATGGCACTGCACAATTTGTGCCGTATCAGGCGCGAAGG
CGTCGCGGCGGTGGTGGACCTCCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1564:10757..11381-

>mRNA_E-fasciculatus_F_contig1564.3911.1 ID=mRNA_E-fasciculatus_F_contig1564.3911.1|Name=mRNA_E-fasciculatus_F_contig1564.3911.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1564:10757..11381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTCGCGAACGACCTCGTATTATTGGCGGGATTGGATGTGGACTTGAGAA
CTGGATTGGGGGGAAATACGCCTCTCCATGTGGCTGCTCTCGAAGGCATA
TTGACGACTTGGTGTCTAGCCTCTTGCTCAGGGGGGCGGACAAAGATGCT
CTCAACGTCGCAAGCAAGACACCACTGATGCACGCATCCAGGCGGGGCTC
GCGAACGACCTCGTATTATTGGCGGGATTGGATGTGGACTTGAGAACTGG
ATTGGGGGGAAATACGCCTCTCCATGTGGCTGCTCTCGAAGGCATATTGA
CGACTTGGTGTCTAGCCTCTTGCTCAGGGGGGCGGACAAAGATGCTCTCA
ACGTCGCAAGCAAGACACCACTGATGCACGCATCCAGGCGGGATGTCAAC
GCGAGAATGGACGATGGGACAACACCTCTCATGTACGGCGTGGTTCACCA
GGAGCGATTCCGTGCGTGCCCTCTTGGAGCGCGGCGCTTCCTTGAAAGAG
GAAGACAACGACGGAAATATGGCACTGCACAATTTGTGCCGTATCAGGCG
CGAAGGCGTCGCGGCGGTGGTGGACCTCCTATGTCAACGCGAGAATGGAC
GATGGGACAACACCTCTCATGTACGGCGTGGTTCACCAGGAGCGATTCCG
TGCGTGCCCTCTTGGAGCGCGGCGCTTCCTTGAAAGAGGAAGACAACGAC
GGAAATATGGCACTGCACAATTTGTGCCGTATCAGGCGCGAAGGCGTCGC
GGCGGTGGTGGACCTCCT
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