mRNA_E-fasciculatus_F_contig15624.3903.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: D7FP51_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP51_ECTSI) HSP 1 Score: 364 bits (934), Expect = 1.610e-117 Identity = 200/273 (73.26%), Postives = 211/273 (77.29%), Query Frame = 2
Query: 593 TRSVASGVALMLFSRNPQTGELALLQTVSDSEAELGGATSVAVSPSGSDVYVASSNPGALAHFCVDESTGELQEVGLEEATIPTQLDLDGASLVTVNPENSRVLVASNANDTMWVLDVGDGECAVLELQDTIVEGDEGRIGGLADVRSIAVSPDGRTALVVSSVDGTIALFRDTTTMDPS--APTPAPTSEGGDPSQPPNEDEWYEQHALALGLGGAAATVAAAGLVWLLITNGCCGIFILMVRRKTRVECPACDKKMEVKRKGLAQRTACSC 1405
T SVASG ALMLFSR+PQTG+LALLQT+SDSE TGELQEV LE AT PTQL LDGASLVTVNP+NSRVLVASNANDT WVL+VGD ECAVLELQDTI EGD G IGGL D+RSIAVSPDGRTALVVSS+DGTIALFRDT T DPS APTPAPTSEG DPSQPPNEDEWYE+ A+ LGLGGAAATVAAAGLVW LI NGCCGI ILMVR KT+V+CPACDKKMEVKRKGL RT CSC
Sbjct: 216 TDSVASGGALMLFSRDPQTGDLALLQTISDSE-----------------------------------GTGELQEVELEGATTPTQLGLDGASLVTVNPDNSRVLVASNANDTFWVLNVGDDECAVLELQDTIAEGDGGHIGGLTDIRSIAVSPDGRTALVVSSMDGTIALFRDTITTDPSPSAPTPAPTSEGEDPSQPPNEDEWYERQAIWLGLGGAAATVAAAGLVWFLIANGCCGIVILMVRGKTKVKCPACDKKMEVKRKGLGHRTTCSC 453
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: D7FL16_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL16_ECTSI) HSP 1 Score: 235 bits (599), Expect = 3.990e-65 Identity = 125/194 (64.43%), Postives = 145/194 (74.74%), Query Frame = 1
Query: 37 AIAPELLFVEVMDITDGAWEAVYTPDGKHVYLTGKDSDSIVAFGVDPSGGSLTMVSNFDM-NTGETGAGTLDGPTVLTVSPDGRCLFVVAAGNNSLTSLSID------GAGSGNLTYAGTVSGAALAEAWDVVVSPTLGDNVYVSSPACGCIITFAADLETCGLTYVSNVTESLVSPTGMAVSPDGLFLYGTDS 597
AIAPE+LF +++ DGAWEAVY PDG HVYLTGK+++SIV F VDPS G LTMV M N AG LDGPT L SPDGRCLFV A G++SLTSL I G G+G+L+++ VS ALA+ WDVVVS GD+VYVSSPACGCI+TFAADL+TCGLTY SNVT SLV+P GM+VSPDG LY TDS
Sbjct: 364 AIAPEMLFSGLIETADGAWEAVYNPDGTHVYLTGKETNSIVVFDVDPSDGRLTMVGESAMDNNSAAEAGALDGPTALATSPDGRCLFVAAVGSSSLTSLRIGDGSIGGGEGTGSLSFSARVSDTALADTWDVVVSLPSGDHVYVSSPACGCIMTFAADLDTCGLTYRSNVTFSLVAPAGMSVSPDGSLLYATDS 557
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: A0A534VM87_9DELT (Disintegrin domain-containing protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534VM87_9DELT) HSP 1 Score: 75.9 bits (185), Expect = 5.050e-11 Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = 2
Query: 617 ALMLFSRNPQTGELALLQTVSDSEAELGGATS---VAVSPSGSDVYVASSNPGALAHFCVDESTGELQEVGLEEATIPTQLDLDGASLVTVNPENSRVLVASNANDTMWVL--DVGDGECAVLELQDTIVEGDEGRIGGLADVRSIAVSPDGRTALVVSSVDGTIALF 1105
AL +F R+ TG L ++ ++ + G T VAVSP G+ VYVAS ALA F D +G L V ++ LDGA + ++P+ + V VA +D++ V D G +++Q +G G + GL +++A+SPDG SVD +A+F
Sbjct: 122 ALAVFHRDSATGALTFVEMQKEAVGGVDGLTDAYGVAVSPDGASVYVASKRGDALAVFSRDAVSGALTFVQAKKDGKGPVNGLDGAEGIAISPDGAYVYVAGRNDDSLAVFSRDAATGALTYVQIQR---DGYAGGVDGLLGAKAVAISPDGAHVYAAGSVDNAVAVF 286
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: A0A534SHE9_9DELT (Lactonase family protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534SHE9_9DELT) HSP 1 Score: 72.8 bits (177), Expect = 3.270e-10 Identity = 68/199 (34.17%), Postives = 91/199 (45.73%), Query Frame = 1
Query: 52 LLFVEV-MDITDG------AWEAVYTPDGKHVYLTGKDSDSIVAFGVDPSGGSLTMVSNFDMNTGETGAGTLDGPTVLTVSPDGRCLFVVAAGNNSLTSLSIDGAGSGNLTY--------AGTVSGAALAEAWDVVVSPTLGDNVYVSSPACGCIITFAADLETCGLTYVS------NVTESLVSPTGMAVSPDGLFLY 585
L FVE+ D DG A V +PDG HVY+ K D++ F D G+LT V + G+ LDG + +SPDG ++V ++SL S D A +G LTY AG V G A+A V VSP G +VY + + F D T LT++ N L ++VSPDG LY
Sbjct: 86 LTFVEMKQDAVDGXXXXXXAHGVVVSPDGVHVYVASKTGDALAVFSRDVDTGALTFVQAKNDGVGKVNG--LDGAEGIAISPDGAHVYVAGRNDDSLAVFSRDAA-TGALTYVEIQRDGSAGVVQGLLGAKA--VAVSPD-GAHVYAAGSLENAVAVFGRDAATGKLTFIEVQREGQNGIVGLDRARALSVSPDGANLY 278
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: A0A7C1SUB0_9SPIR (Uncharacterized protein (Fragment) n=1 Tax=Spirochaetales bacterium TaxID=2026792 RepID=A0A7C1SUB0_9SPIR) HSP 1 Score: 73.6 bits (179), Expect = 3.490e-10 Identity = 62/185 (33.51%), Postives = 88/185 (47.57%), Query Frame = 1
Query: 70 MDITDGAWEAVYTPDGKHVYLTGKDSDSIVAFGVDPSGGSLTMVSNFDMNTGETGAGTLDGPTVLTVSPDGRCLFVVAAGNNSLTSLSIDGAGSGNLTYAGTVSG-----AALAEAWDVVVSPTLGDNVYVSSPACGCIITFAADLETCGLTYVS------NVTESLVSPTGMAVSPDGLFLYGT 591
+D GA V + DGK VY+TG + + F D G+LT F + G G L G +T+SPDG+ ++V +N L + D G+GNLTY+G + A L D+ VSP G NVYV+ + F D T L+Y S + L +G+ VSPDG ++ T
Sbjct: 394 VDCLSGARSVVVSSDGKSVYVTGYVDNGLAVFNRDTGTGALTFTQCFYDDVG--GIDCLYGAKGITISPDGKNVYVTGYQDNGLAVFNRD-TGTGNLTYSGYLKEGENGVAGLDGPEDITVSPD-GKNVYVTGFTGDTLAVFNRDTTTGELSYSSLFRDEQGGVDGLNGASGITVSPDGDNVFAT 574
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: A0A1W9NA61_9SPIO (Uncharacterized protein n=1 Tax=Spirochaeta sp. LUC14_002_19_P3 TaxID=1940821 RepID=A0A1W9NA61_9SPIO) HSP 1 Score: 72.8 bits (177), Expect = 3.500e-10 Identity = 63/182 (34.62%), Postives = 94/182 (51.65%), Query Frame = 2
Query: 617 ALMLFSRNPQTGELALLQTVSDSEAELGG--------ATSVAVSPSGSDVYVASSNPGALAHFCVDESTGELQEVGLEEATIPTQLDLDGASLVTVNPENSRVLVASNANDTMWVL--DVGDGEC---AVLELQDTIVEGDEGRIGGLADVRSIAVSPDGRTALVVSSVDGTIALF-RDTTT 1120
AL +F+R+ TGEL + D++A GG AT+VAVS G +VYVA + ALA F D +TG L + + ++GAS V V+ + V VA + ++ + V D G AV++ D + G G + GL RS+ +S DG+ V S+D +A+F RDT+T
Sbjct: 132 ALAVFNRDTSTGELTYSAVIKDNDALTGGGNVDGLEGATAVAVSQDGKNVYVAGRSDRALAVFTRD-TTGALTFSTVFKDGSGGVDGINGASSVVVSEDGKNVYVAGSDDNALAVFNRDTSTGALTYSAVIKDNDALTGG--GNVDGLESARSLTISQDGKNVYVAGSLDSALAVFNRDTST 310
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: A0A534RH69_9DELT (Disintegrin domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534RH69_9DELT) HSP 1 Score: 73.2 bits (178), Expect = 5.210e-10 Identity = 54/168 (32.14%), Postives = 83/168 (49.40%), Query Frame = 2
Query: 617 ALMLFSRNPQTGELALLQTVSDSEAELGGATS---VAVSPSGSDVYVASSNPGALAHFCVDESTGELQEVGLEEATIPTQLDLDGASLVTVNPENSRVLVASNANDTMWVL--DVGDGECAVLELQDTIVEGDEGRIGGLADVRSIAVSPDGRTALVVSSVDGTIALF 1105
AL +F R+ TG L ++ ++ + G T VAVSP G+ VYVAS ALA F D +G L V + LDGA + ++P+ V VA +D++ V D G +++Q +G G + GL +++A+SPDG S+D +A+F
Sbjct: 122 ALAVFHRDSATGALTFVEVQKEAVGGVDGLTGAYGVAVSPDGASVYVASKRGDALAVFSRDAVSGALTFVQAKLDGKGPVNGLDGAEGIAISPDGGYVYVAGRNDDSLAVFSRDAATGALTYVQIQR---DGYAGGVDGLLGAKAVAISPDGAHVYAAGSLDNAVAVF 286
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: A0A535ABP0_9DELT (Uncharacterized protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A535ABP0_9DELT) HSP 1 Score: 70.9 bits (172), Expect = 2.190e-9 Identity = 58/173 (33.53%), Postives = 88/173 (50.87%), Query Frame = 2
Query: 614 VALMLFSRNPQTGE--LALLQTVSDSEAELGG---ATSVAVSPSGSDVYVASSNPGALAHFCVDESTGELQEVGLEEATIPTQLDLDGASLVTVNPENSRVLVASNANDTM--WVLDVGDGECAVLELQDTIVEGDEGRIGGLADVRSIAVSPDGRTALVVSSVDGTIALFRD 1111
+A++L + P LA L T D A + G A ++A+SP G+ +Y A S ALA F VD +TG L V ++ L GAS V V+P+ + V A +D++ +V D G G A +E + V+ + GLA V ++A+SPDG T + + +G RD
Sbjct: 10 LAILLAAARPTLAADGLAYLSTHHDGTAGVNGLHSAQALALSPDGTSLYAAGSGDSALAVFSVDPATGALAFVEEDKQGSAGIEGLGGASAVAVSPDGANVYAAGTQDDSLAVFVRDAGTGALAFVERERDSVDA----VTGLAGVSAVAISPDG-TNVYATGTNGIAIFLRD 177
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: A0A534VCW3_9DELT (Lactonase family protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534VCW3_9DELT) HSP 1 Score: 68.9 bits (167), Expect = 2.740e-9 Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 2
Query: 704 ATSVAVSPSGSDVYVASSNPGALAHFCVDESTGELQEVGLEEATIPTQLDLDGASLVTVNPENSRVLVASNANDTMWVL--DVGDGECAVLELQDTIVEGDEGRIGGLADVRSIAVSPDGRTALVVSSVDGTIALF-RDTTT 1120
A ++A+SP G+D+Y A S ALA F D ++G L V E L GAS V V+P+ V A +D++ V D DG +E + V+G + GLA + ++AVSPDG D +A F RD TT
Sbjct: 61 ADALALSPDGADLYAAGSGDSALAVFSRDAASGALTFVEQERQGSFGIEGLGGASAVAVSPDGINVYAAGTQDDSLVVFTRDPADGALFFVERKRDSVDG----VDGLAGINAVAVSPDGMNVYATGGADDALATFMRDATT 198
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Match: A0A239KKD6_9PROT (Autotransporter-associated beta strand repeat-containing protein (Fragment) n=1 Tax=Azospirillum sp. RU38E TaxID=1907313 RepID=A0A239KKD6_9PROT) HSP 1 Score: 71.2 bits (173), Expect = 2.930e-9 Identity = 59/183 (32.24%), Postives = 86/183 (46.99%), Query Frame = 1
Query: 70 MDITDGAWEAVYTPDGKHVYLTGKDSDSIVAFGVDPSGGSLTMVSNFDMNTGETGAGTLDGPTVLTVSPDGRCLFVVAAGNNSLTSLSIDGAGSGNLTYAGTVSGA-----ALAEAWDVVVSPTLGDNVYVSSPACGCIITFAADLETCGLTYVS------NVTESLVSPTGMAVSPDGLFLY 585
+D DGA + DGK+VY+ G + ++ F D S G+LT S N L G +TVSPD + ++V + + + S D A +G LT+A T+ L A + VSP G NVYV+S + F+ D T LTYV+ N + L + +S DGL +Y
Sbjct: 5901 VDGLDGAQSVTISADGKNVYVAGFNDSAVAVFTRDTSTGALTYASVLQNNVNNVAG--LSGAYSVTVSPDDKHVYVASYFFDGIAVFSRD-ASTGALTFATTIKNGLNNVIGLDGAQSITVSPD-GKNVYVASSVSSALAVFSRDSNTGALTYVTALVDGQNGVDGLNEARSVTMSADGLSVY 6079 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15624.3903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15624.3903.1 >prot_E-fasciculatus_F_contig15624.3903.1 ID=prot_E-fasciculatus_F_contig15624.3903.1|Name=mRNA_E-fasciculatus_F_contig15624.3903.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=279bp MDCSCTGRTRSVASGVALMLFSRNPQTGELALLQTVSDSEAELGGATSVAback to top mRNA from alignment at E-fasciculatus_F_contig15624:415..2974+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15624.3903.1 ID=mRNA_E-fasciculatus_F_contig15624.3903.1|Name=mRNA_E-fasciculatus_F_contig15624.3903.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2560bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15624:415..2974+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15624:415..2974+ >mRNA_E-fasciculatus_F_contig15624.3903.1 ID=mRNA_E-fasciculatus_F_contig15624.3903.1|Name=mRNA_E-fasciculatus_F_contig15624.3903.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1674bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15624:415..2974+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |