mRNA_E-fasciculatus_F_contig15570.3877.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15570.3877.1
Unique NamemRNA_E-fasciculatus_F_contig15570.3877.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 7.080e-27
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:   16 RSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPK 186
            RSLRPKGV+ELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 
Sbjct:  605 RSLRPKGVLELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPN 661
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.580e-26
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:   19 SLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPK 186
            SLRPKGV+ELFAA+LQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 
Sbjct:  633 SLRPKGVLELFAAVLQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPN 688
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: A0A8D0BAY2_9SAUR (DENN domain containing 4C n=2 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BAY2_9SAUR)

HSP 1 Score: 60.1 bits (144), Expect = 5.290e-9
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    1 FFSIRRSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 183
            F ++  +L P+    L   +L EG+ILLHS +PA+L  VAE V A+++P QWP  Y+P+ P
Sbjct:  393 FSTLLMNLGPENCATLLLCVLLEGKILLHSLRPAVLTGVAEAVAAMIFPFQWPCPYIPLCP 453
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: A0A852L7K7_UROIN (DEN4C protein (Fragment) n=1 Tax=Urocolius indicus TaxID=458196 RepID=A0A852L7K7_UROIN)

HSP 1 Score: 57.8 bits (138), Expect = 3.460e-8
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 FFSIRRSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 183
            F ++  +L P+    L   +L EG+ILLHS +PALL  VAE V A+++P QW   Y+P+ P
Sbjct:  393 FSNLLMNLGPENCATLLLFVLLEGKILLHSLRPALLTGVAEAVVAMIFPFQWQCPYIPLCP 453
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: UPI00163C3E2D (LOW QUALITY PROTEIN: DENN domain-containing protein 4C n=1 Tax=Egretta garzetta TaxID=188379 RepID=UPI00163C3E2D)

HSP 1 Score: 57.4 bits (137), Expect = 4.730e-8
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    1 FFSIRRSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 183
            F ++  +L P+    L + +L EG+ILLHS +PA+L  VAE V A+++P QW   Y+P+ P
Sbjct:  395 FSTLLMNLGPENCATLLSFVLLEGKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCP 455
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: UPI0005323895 (DENN domain-containing protein 4C-like n=1 Tax=Balearica regulorum gibbericeps TaxID=100784 RepID=UPI0005323895)

HSP 1 Score: 56.6 bits (135), Expect = 8.510e-8
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 FFSIRRSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 183
            F ++  +L P+    L   +L EG+ILLHS +PA+L  VAE V A+++P QW   Y+P+ P
Sbjct:  127 FSTLLMNLGPENCATLLLFVLLEGKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCP 187
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: UPI000529248A (DENN domain-containing protein 4C-like n=1 Tax=Mesitornis unicolor TaxID=54374 RepID=UPI000529248A)

HSP 1 Score: 56.6 bits (135), Expect = 8.670e-8
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 FFSIRRSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 183
            F ++  +L P+    L   +L EG+ILLHS +PA+L  VAE V A+++P QW   Y+P+ P
Sbjct:  291 FSTLLMNLGPENCATLLLFVLLEGKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCP 351
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: A0A6G1RAH6_9GRUI (DENN domain containing 4C (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A6G1RAH6_9GRUI)

HSP 1 Score: 56.6 bits (135), Expect = 8.690e-8
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 FFSIRRSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 183
            F ++  +L P+    L   +L EG+ILLHS +PA+L  VAE V A+++P QW   Y+P+ P
Sbjct:  395 FSTLLMNLGPENCATLLLFVLLEGKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCP 455
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: K7FNM9_PELSI (DENN domain containing 4C n=2 Tax=Archelosauria TaxID=1329799 RepID=K7FNM9_PELSI)

HSP 1 Score: 56.6 bits (135), Expect = 8.710e-8
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 FFSIRRSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 183
            F ++  +L P+    L   +L EG+ILLHS +PA+L  VAE V A+++P QW   Y+P+ P
Sbjct:  393 FSTLLMNLGPENCATLLLFVLLEGKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCP 453
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BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Match: UPI0005307FA7 (DENN domain-containing protein 4C-like n=1 Tax=Phaethon lepturus TaxID=97097 RepID=UPI0005307FA7)

HSP 1 Score: 56.6 bits (135), Expect = 8.780e-8
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 FFSIRRSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLP 183
            F ++  +L P+    L   +L EG+ILLHS +PA+L  VAE V A+++P QW   Y+P+ P
Sbjct:  395 FSTLLMNLGPENCATLLLFVLLEGKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCP 455
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15570.3877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB83_ECTSI7.080e-2796.49WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KB05_9PHAE4.580e-2694.64UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8D0BAY2_9SAUR5.290e-944.26DENN domain containing 4C n=2 Tax=Salvator meriana... [more]
A0A852L7K7_UROIN3.460e-844.26DEN4C protein (Fragment) n=1 Tax=Urocolius indicus... [more]
UPI00163C3E2D4.730e-842.62LOW QUALITY PROTEIN: DENN domain-containing protei... [more]
UPI00053238958.510e-842.62DENN domain-containing protein 4C-like n=1 Tax=Bal... [more]
UPI000529248A8.670e-842.62DENN domain-containing protein 4C-like n=1 Tax=Mes... [more]
A0A6G1RAH6_9GRUI8.690e-842.62DENN domain containing 4C (Fragment) n=3 Tax=Neogn... [more]
K7FNM9_PELSI8.710e-842.62DENN domain containing 4C n=2 Tax=Archelosauria Ta... [more]
UPI0005307FA78.780e-842.62DENN domain-containing protein 4C-like n=1 Tax=Pha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15570contigE-fasciculatus_F_contig15570:451..639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.3e-23
Seed eggNOG ortholog2880.D8LB83
Preferred nameSCD1
KEGG koko:K03361,ko:K20164
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00407
GOsGO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG0274@1,KOG0274@2759,KOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.1381762-CDS-E-fasciculatus_F_contig15570:450..6391622928031.1381762-CDS-E-fasciculatus_F_contig15570:450..639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15570 451..639 +
1695995795.705295-CDS-E-fasciculatus_F_contig15570:450..6391695995795.705295-CDS-E-fasciculatus_F_contig15570:450..639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15570 451..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15570.3877.1prot_E-fasciculatus_F_contig15570.3877.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15570 451..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15570.3877.1

>prot_E-fasciculatus_F_contig15570.3877.1 ID=prot_E-fasciculatus_F_contig15570.3877.1|Name=mRNA_E-fasciculatus_F_contig15570.3877.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=63bp
FFSIRRSLRPKGVMELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPL
QWPYAYVPVLPK*
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mRNA from alignment at E-fasciculatus_F_contig15570:451..639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15570.3877.1 ID=mRNA_E-fasciculatus_F_contig15570.3877.1|Name=mRNA_E-fasciculatus_F_contig15570.3877.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=189bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15570:451..639+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTTTTTCAATCCGCAGATCTCTCCGTCCGAAGGGAGTTATGGAGCTCTT
CGCTGCGATACTGCAGGAGGGTCGCATCCTGCTGCACTCCGCGAAGCCGG
CGCTGTTGGCGGCGGTGGCGGAGGGTGTGTTCGCGCTCATGTACCCGTTG
CAGTGGCCGTACGCTTACGTGCCCGTTCTGCCCAAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15570:451..639+

>mRNA_E-fasciculatus_F_contig15570.3877.1 ID=mRNA_E-fasciculatus_F_contig15570.3877.1|Name=mRNA_E-fasciculatus_F_contig15570.3877.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15570:451..639+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTTTTTCAATCCGCAGATCTCTCCGTCCGAAGGGAGTTATGGAGCTCTT
CGCTGCGATACTGCAGGAGGGTCGCATCCTGCTGCACTCCGCGAAGCCGG
CGCTGTTGGCGGCGGTGGCGGAGGGTGTGTTCGCGCTCATGTACCCGTTG
CAGTGGCCGTACGCTTACGTGCCCGTTCTGCCCAAGTGATTTTTTTCAAT
CCGCAGATCTCTCCGTCCGAAGGGAGTTATGGAGCTCTTCGCTGCGATAC
TGCAGGAGGGTCGCATCCTGCTGCACTCCGCGAAGCCGGCGCTGTTGGCG
GCGGTGGCGGAGGGTGTGTTCGCGCTCATGTACCCGTTGCAGTGGCCGTA
CGCTTACGTGCCCGTTCTGCCCAAGTGA
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