mRNA_E-fasciculatus_F_contig15558.3869.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI) HSP 1 Score: 336 bits (861), Expect = 6.440e-112 Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 1
Query: 1 IWLLTKNLYMRPGTTLLLHGDLGCEELRIASSSTNALHLNTFGGYISILNTKVTSWSISKGEPDAGAYDGSNPRSYMSAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQ 501
IWLLTK+LYMRPGTTLLLH DLGC ELRIASSSTNALHLNTFGGYISILNTKVTSWS+S EPDAGAYDGSNPRSYMSAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQ
Sbjct: 96 IWLLTKHLYMRPGTTLLLHDDLGCTELRIASSSTNALHLNTFGGYISILNTKVTSWSVSNKEPDAGAYDGSNPRSYMSAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQ 262
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: A0A6H5L834_9PHAE (MEP8 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L834_9PHAE) HSP 1 Score: 221 bits (564), Expect = 3.520e-72 Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 1
Query: 154 KVTSWSISKGEPDAGAYDGSNPRSYMSAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 483
+VTSWS+S EPDAGAYDGSNPRSY+SAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYC DESNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct: 8 QVTSWSVSDKEPDAGAYDGSNPRSYISAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCADESNPEVFDRVNVRGDIRFSDIHHNWFGQ 117
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI) HSP 1 Score: 228 bits (582), Expect = 1.500e-71 Identity = 110/161 (68.32%), Postives = 123/161 (76.40%), Query Frame = 1
Query: 1 IWLLTKNLYMRPGTTLLLHGDLGCEELRIASSSTNALHLNTFGGYISILNTKVTSWSISKGEPDAGAYDGSNPRSYMSAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 483
IWL+TKN++M GTTLLLH DLGC+ +TSWS+ PD GAYDG N RS++SAVSEMTHPSDTCDGAADDDAGEAR+DIINS+V YLGYQA+ESYG++YKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct: 3 IWLMTKNIFMESGTTLLLHDDLGCD---------------------------LTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQASESYGISYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 136
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 174 bits (440), Expect = 3.670e-49 Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = 1
Query: 4 WLLTKNLYMRPGTTLLLHGDLG---CEELRIASSSTNALHLNTFGGYISILNTKVTSWSISKGEPDAGAYDGSNPRSYMSAVSEM-THPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQ 501
WLLT+ +Y+ G TL +HG +ELR+ S+S +HL +GG + L+TKV +W SK PD DG RSY+SAVSE+ T TC+G A ++ GEAR+DI NS++ YLGY E+YGLT+KVRG+C D+ NPE+FD VNV G+I SDIHHN FG Y+YGHQ
Sbjct: 74 WLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDG---RSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQ 240
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE) HSP 1 Score: 174 bits (441), Expect = 4.250e-49 Identity = 86/167 (51.50%), Postives = 119/167 (71.26%), Query Frame = 1
Query: 4 WLLTKNLYMRPGTTLLLHGDLGCEELRIASSSTNALHLNTFGGYISILNTKVTSWSISKGEPDAGAYDGSNPRSYMSAVSE-MTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQ 501
WL T ++Y+ G L LH + G +R+ S S + L GG++S+LNT+++SW + + + A + S PRSY++A+SE + P TC G A +DAGEAR DIINS+V +LG+ E+YG+T+KVRG+C D SN ++FDRVNVRGDIRFSDIHHN+FG Y+YGHQ
Sbjct: 104 WLFTSDVYIYDGVKLELHAESGTTGMRLKSDS-KVIELRAHGGWLSLLNTELSSWDVDEADY---ASNYSAPRSYVTAISEVLDSPPQTCVGHAKNDAGEARFDIINSEVHHLGHYGTEAYGITWKVRGFCVDLSNEDLFDRVNVRGDIRFSDIHHNYFGMYTYGHQ 266
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI) HSP 1 Score: 174 bits (440), Expect = 1.110e-47 Identity = 90/171 (52.63%), Postives = 119/171 (69.59%), Query Frame = 1
Query: 1 IWLLTKNLYMRPGTTLLLHG-DLG--CEELRIASSSTNALHLNTFGGYISILNTKVTSWSISKGEPDAGAYDGSNPRSYMSAVSEMTH-PSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQ 501
+WLLT+ LY+ G L +HG D G C+ELR+ S T ++L GG S L TKV SW+ KG D DG RSY+SAVSE+ + P+ TC+G A + GEAR+D+I+S++ +LGY +ESYGLT+KVRG+C D+SN +VFD VNV GD+ S+IH N+FG YSYGHQ
Sbjct: 410 VWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSWNEGKGTVDTNHEDG---RSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCIDKSNLDVFDFVNVYGDMINSNIHDNYFGHYSYGHQ 577
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: A0A6H5KKL2_9PHAE (MEP23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL2_9PHAE) HSP 1 Score: 158 bits (399), Expect = 3.560e-47 Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 1
Query: 10 LTKNLYMRPGTTLLLHGDLGCEELRIASSSTNALHLNTFGGYISILNTKVTSWSISKGEPDAGAYDGSNPRSYMSAVSEMTHPSDTCDGAADDDAGEARLD 312
+TKN++M GTTLLLH DLGC+ELRI SSSTNA HL FG YIS+L TK+TSWS+ PD GAYDG N RS++SAVSEMTHPSDTCDGAADDDAGEAR+D
Sbjct: 1 MTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMD 101
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 169 bits (428), Expect = 3.600e-47 Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = 1
Query: 4 WLLTKNLYMRPGTTLLLHGDLG---CEELRIASSSTNALHLNTFGGYISILNTKVTSWSISKGEPDAGAYDGSNPRSYMSAVSEM-THPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQ 501
WLLT++LY+ G TL +HG ELR+ S+S + ++L GG + ++TKV +W SK + DGS RSY+SAVSE+ T + CDG A GEAR+DI +S++ YLGYQ +ESYGLT+KVRG+C D SNPEVFD VNV G+I SDIHHN FG Y+YGH+
Sbjct: 103 WLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRT---DGSKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHE 269
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 169 bits (428), Expect = 4.270e-47 Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 1
Query: 4 WLLTKNLYMRPGTTLLLHG-DLG--CEELRIASSSTNALHLNTFGGYISILNTKVTSWSISKGEPDAGAYDGSNPRSYMSAVSEM-THPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQ 501
WLLT+ LY+ G TL ++G D G +ELR+ S+S ++L GG + + TKV SW S PD DG RSY+SAVSE+ T +TC+G A + GEAR+DI NS++GYLG+Q +ESYGLT+KVRG+C D+SNPE+FD VNV G++ SDIHH FG Y+YGHQ
Sbjct: 107 WLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDG---RSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQ 273
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 164 bits (416), Expect = 7.730e-47 Identity = 85/170 (50.00%), Postives = 115/170 (67.65%), Query Frame = 1
Query: 4 WLLTKNLYMRPGTTLLLHGDL---GCEELRIASSSTNALHLNTFGGYISILNTKVTSWSISKGEPDAGAYDGSNPRSYMSAVSEM-THPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQ 501
WLLT+ LY+ G TL ++G +ELR+ S++ ++L GG + + TKV SW S PD DG RSY+SA+SE+ T +TC+G A + GEAR+DI NS++GYLG+Q +ESYGLT+KVRG+C D+SNP +FD VNV G++ SDIHH FG Y+YGHQ
Sbjct: 106 WLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDG---RSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQ 272 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15558.3869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15558.3869.1 >prot_E-fasciculatus_F_contig15558.3869.1 ID=prot_E-fasciculatus_F_contig15558.3869.1|Name=mRNA_E-fasciculatus_F_contig15558.3869.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=158bp MRPGTTLLLHGDLGCEELRIASSSTNALHLNTFGGYISILNTKVTSWSISback to top mRNA from alignment at E-fasciculatus_F_contig15558:95..2994+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15558.3869.1 ID=mRNA_E-fasciculatus_F_contig15558.3869.1|Name=mRNA_E-fasciculatus_F_contig15558.3869.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15558:95..2994+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15558:95..2994+ >mRNA_E-fasciculatus_F_contig15558.3869.1 ID=mRNA_E-fasciculatus_F_contig15558.3869.1|Name=mRNA_E-fasciculatus_F_contig15558.3869.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=948bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15558:95..2994+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |