mRNA_E-fasciculatus_F_contig15554.3866.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15554.3866.1
Unique NamemRNA_E-fasciculatus_F_contig15554.3866.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15554.3866.1 vs. uniprot
Match: A0A6H5JFB2_9PHAE (Phosphoglycerate kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB2_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 2.250e-57
Identity = 123/160 (76.88%), Postives = 128/160 (80.00%), Query Frame = 1 
Query:    1 PRSRSPSXXXXPLSRLGALKWEDVEGRRILLHVDLSKGVTPDDGTYGGGLGGGGGDGIRHDGTGGGTGQLEFPEQVRLVAEQVREVLSAKPAAVAIVSEMAPPAPXXXXXXXXXXXXINNSEDVDKEETSSQNQPLAGPETQQQEQQPSAQHPTAGDPTA 480
            PRS S  XXXXPLSRLGALKWEDV GRRILLHVDLSKG TP+DGTYGG LG GGGDGI HDGTGG TGQ EFP+QVR+VAEQVREVLSAKPAAVAIVSEMAPPA             I NSEDVD +E SSQ+QPLA P TQQ EQQ SAQHP AGDP A
Sbjct:  608 PRSPSXXXXXXPLSRLGALKWEDVGGRRILLHVDLSKGATPEDGTYGGSLGVGGGDGIGHDGTGGRTGQQEFPKQVRMVAEQVREVLSAKPAAVAIVSEMAPPALATAVAPATATLNIKNSEDVDTQENSSQSQPLAEPGTQQ-EQQLSAQHPPAGDPAA 766
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BLAST of mRNA_E-fasciculatus_F_contig15554.3866.1 vs. uniprot
Match: D7FWR0_ECTSI (Phosphoglycerate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR0_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 2.300e-57
Identity = 129/160 (80.62%), Postives = 132/160 (82.50%), Query Frame = 1 
Query:    1 PRSRSPSXXXXPLSRLGALKWEDVEGRRILLHVDLSKGVTPDDGTYGGGLGGGGGDGIRHDGTGGGTGQLEFPEQVRLVAEQVREVLSAKPAAVAIVSEMAPPAPXXXXXXXXXXXXINNSEDVDKEETSSQNQPLAGPETQQQEQQPSAQHPTAGDPTA 480
            PRS S  XXXXPLSRLGALKWEDVEGRRILLHVDLSKGVTP+DGTYGG LGGGGGDGI HDGT GGTGQ EFP+QVRLVAEQVREVLSAKPAAVAIVSEMAPPA     XXXXXXXX               +QPLAGPETQQQEQQPSAQHP AGDPTA
Sbjct: 1380 PRSPSXXXXXXPLSRLGALKWEDVEGRRILLHVDLSKGVTPEDGTYGGSLGGGGGDGIGHDGTDGGTGQQEFPKQVRLVAEQVREVLSAKPAAVAIVSEMAPPALATAVXXXXXXXXXXXXXXXXXXXXXXXSQPLAGPETQQQEQQPSAQHPPAGDPTA 1539
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15554.3866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFB2_9PHAE2.250e-5776.88Phosphoglycerate kinase n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWR0_ECTSI2.300e-5780.63Phosphoglycerate kinase n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15554contigE-fasciculatus_F_contig15554:790..1269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue4.3e-51
Seed eggNOG ortholog2880.D7FWR0
KEGG rclassRC00002,RC00043
KEGG koko:K00927
KEGG ReactionR01512
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005975,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019253,GO:0019538,GO:0019685,GO:0030312,GO:0031967,GO:0031975,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901576
EggNOG free text desc.phosphoglycerate kinase activity
EggNOG OGsCOG0126@1,KOG1367@2759
EC2.7.2.3
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928029.3366249-CDS-E-fasciculatus_F_contig15554:789..12691622928029.3366249-CDS-E-fasciculatus_F_contig15554:789..1269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15554 790..1269 +
1695995795.2055216-CDS-E-fasciculatus_F_contig15554:789..12691695995795.2055216-CDS-E-fasciculatus_F_contig15554:789..1269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15554 790..1269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15554.3866.1prot_E-fasciculatus_F_contig15554.3866.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15554 790..1269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15554.3866.1

>prot_E-fasciculatus_F_contig15554.3866.1 ID=prot_E-fasciculatus_F_contig15554.3866.1|Name=mRNA_E-fasciculatus_F_contig15554.3866.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp
PRSRSPSPPPPPLSRLGALKWEDVEGRRILLHVDLSKGVTPDDGTYGGGL
GGGGGDGIRHDGTGGGTGQLEFPEQVRLVAEQVREVLSAKPAAVAIVSEM
APPAPATAAAPATATPNINNSEDVDKEETSSQNQPLAGPETQQQEQQPSA
QHPTAGDPTA
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mRNA from alignment at E-fasciculatus_F_contig15554:790..1269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15554.3866.1 ID=mRNA_E-fasciculatus_F_contig15554.3866.1|Name=mRNA_E-fasciculatus_F_contig15554.3866.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15554:790..1269+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAGATCACGATCACCGTCACCGCCACCGCCACCGCTCTCTCGGCTGGG
CGCTCTCAAGTGGGAAGATGTAGAGGGTAGGCGTATTCTCTTGCACGTTG
ACCTCTCCAAGGGGGTGACGCCGGACGACGGCACTTACGGGGGTGGCCTC
GGTGGAGGGGGTGGCGATGGCATCCGTCACGATGGTACGGGCGGCGGCAC
TGGTCAACTGGAGTTTCCGGAACAGGTGCGGTTGGTGGCGGAACAGGTGC
GGGAAGTGCTGTCGGCGAAGCCCGCTGCGGTTGCGATTGTGTCCGAGATG
GCTCCGCCTGCCCCCGCCACTGCCGCCGCCCCCGCTACCGCCACCCCAAA
CATCAATAACTCCGAGGATGTCGACAAGGAGGAAACTTCTTCCCAGAACC
AACCATTGGCGGGACCGGAAACGCAACAACAAGAACAACAACCGTCAGCA
CAGCACCCTACCGCCGGTGATCCGACAGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15554:790..1269+

>mRNA_E-fasciculatus_F_contig15554.3866.1 ID=mRNA_E-fasciculatus_F_contig15554.3866.1|Name=mRNA_E-fasciculatus_F_contig15554.3866.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15554:790..1269+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAGATCACGATCACCGTCACCGCCACCGCCACCGCTCTCTCGGCTGGG
CGCTCTCAAGTGGGAAGATGTAGAGGGTAGGCGTATTCTCTTGCACGTTG
ACCTCTCCAAGGGGGTGACGCCGGACGACGGCACTTACGGGGGTGGCCTC
GGTGGAGGGGGTGGCGATGGCATCCGTCACGATGGTACGGGCGGCGGCAC
TGGTCAACTGGAGTTTCCGGAACAGGTGCGGTTGGTGGCGGAACAGGTGC
GGGAAGTGCTGTCGGCGAAGCCCGCTGCGGTTGCGATTGTGTCCGAGATG
GCTCCGCCTGCCCCCGCCACTGCCGCCGCCCCCGCTACCGCCACCCCAAA
CATCAATAACTCCGAGGATGTCGACAAGGAGGAAACTTCTTCCCAGAACC
AACCATTGGCGGGACCGGAAACGCAACAACAAGAACAACAACCGTCAGCA
CAGCACCCTACCGCCGGTGATCCGACAGCCCCGAGATCACGATCACCGTC
ACCGCCACCGCCACCGCTCTCTCGGCTGGGCGCTCTCAAGTGGGAAGATG
TAGAGGGTAGGCGTATTCTCTTGCACGTTGACCTCTCCAAGGGGGTGACG
CCGGACGACGGCACTTACGGGGGTGGCCTCGGTGGAGGGGGTGGCGATGG
CATCCGTCACGATGGTACGGGCGGCGGCACTGGTCAACTGGAGTTTCCGG
AACAGGTGCGGTTGGTGGCGGAACAGGTGCGGGAAGTGCTGTCGGCGAAG
CCCGCTGCGGTTGCGATTGTGTCCGAGATGGCTCCGCCTGCCCCCGCCAC
TGCCGCCGCCCCCGCTACCGCCACCCCAAACATCAATAACTCCGAGGATG
TCGACAAGGAGGAAACTTCTTCCCAGAACCAACCATTGGCGGGACCGGAA
ACGCAACAACAAGAACAACAACCGTCAGCACAGCACCCTACCGCCGGTGA
TCCGACAGCC
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