mRNA_E-fasciculatus_F_contig155.3842.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig155.3842.1 vs. uniprot
Match: D7FT48_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT48_ECTSI) HSP 1 Score: 412 bits (1060), Expect = 6.060e-140 Identity = 227/275 (82.55%), Postives = 237/275 (86.18%), Query Frame = 1
Query: 1 MHNAIAKCGVLKKKSGMLRRKESRFYVLTNTGGFFFAKGFA-EFDSLKPLLTLTGSSEVSLERGGSADSGYVMRIATRGGNKNPPLELEAGRQASCVASFDVVGASTDPDTVAWSQVVQDVIELVGIVNGDQYAAQPRPLGGLRVGDEGWYLEPTGRMALYTLNSHRRWIVQDRREYDEPTVLNWIAGDRASR-SSSGSNSARLGYPSQSGATAAAASSGSSADQQGSRSPDYPVNNGRRSPGPAPPAHPADYPSQHSHAQQPMRSANATMSHLG 819
M+NAIAKCGVLKKKSGMLRRKESRFYVLTNTGG FFAKGFA EFDSLKPLLTLTGSSEVSLERGGSADSGYVMRI TRG NK PPLELEA S++P+TVAWSQVV DVIELVG +NGDQYAAQPRPLGGLRVGDEGWYLEPTGRMALYTLNSHRRW VQDRREYDEPTVLNWIAGDR SR SSSGSNSARLGYPSQSGA+A +GSSADQ GS SPDYPVN+ R P PAPPAHPADYPSQHSH+Q MRS +ATMSHLG
Sbjct: 2 MYNAIAKCGVLKKKSGMLRRKESRFYVLTNTGGIFFAKGFAAEFDSLKPLLTLTGSSEVSLERGGSADSGYVMRITTRG-NKPPPLELEA---------------SSEPETVAWSQVVHDVIELVGTINGDQYAAQPRPLGGLRVGDEGWYLEPTGRMALYTLNSHRRWAVQDRREYDEPTVLNWIAGDRVSRTSSSGSNSARLGYPSQSGASA----TGSSADQ-GSGSPDYPVNSXRXXPDPAPPAHPADYPSQHSHSQS-MRSTSATMSHLG 254
BLAST of mRNA_E-fasciculatus_F_contig155.3842.1 vs. uniprot
Match: A0A6H5K968_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K968_9PHAE) HSP 1 Score: 368 bits (944), Expect = 1.050e-123 Identity = 207/258 (80.23%), Postives = 213/258 (82.56%), Query Frame = 1
Query: 55 RRKESRFYVLTNTGGFFFAKGFA-EFDSLKPLLTLTGSSEVSLERGGSADSGYVMRIATRGGNKNPPLELEAGRQASCVASFDVVGASTDPDTVAWSQVVQDVIELVGIVNGDQYAAQPRPLGGLRVGDEGWYLEPTGRMALYTLNSHRRWIVQDRREYDEPTVLNWIAGDRASRSSSG-SNSARLGYPSQSGATAAAASSGSSADQQGSRSPDYPVNNGRRSPGPAPPAHPADYPSQHSHAQQPMRSANATMSHLGG 822
RR + FYVLTNTGG FFAKGFA EFDSLKPLL LTGSSEVSLERG SADSGYVMRI TRG NK PPLELEA +P+TVAWSQVV DVIELVG VNGDQYAAQPRPLGGLRVGDEGWYLEPTGRMALYTLNSHRRW VQDRREYDEPTVLNWIAGDR SRSSSG SNSARLGYPSQSGA AA +G SADQ GS SPDYPVN+GR SP PAPPAHPADYPSQHSH Q MRS +ATMSHLGG
Sbjct: 62 RRNDWPFYVLTNTGGIFFAKGFAAEFDSLKPLLMLTGSSEVSLERGVSADSGYVMRITTRG-NKPPPLELEA-----------------EPETVAWSQVVHDVIELVGTVNGDQYAAQPRPLGGLRVGDEGWYLEPTGRMALYTLNSHRRWAVQDRREYDEPTVLNWIAGDRVSRSSSGGSNSARLGYPSQSGAAAA---TGFSADQ-GSWSPDYPVNSGRGSPDPAPPAHPADYPSQHSHTQS-MRSTSATMSHLGG 296 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig155.3842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig155.3842.1 >prot_E-fasciculatus_F_contig155.3842.1 ID=prot_E-fasciculatus_F_contig155.3842.1|Name=mRNA_E-fasciculatus_F_contig155.3842.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=329bp MHNAIAKCGVLKKKSGMLRRKESRFYVLTNTGGFFFAKGFAEFDSLKPLLback to top mRNA from alignment at E-fasciculatus_F_contig155:31293..37013+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig155.3842.1 ID=mRNA_E-fasciculatus_F_contig155.3842.1|Name=mRNA_E-fasciculatus_F_contig155.3842.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5721bp|location=Sequence derived from alignment at E-fasciculatus_F_contig155:31293..37013+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig155:31293..37013+ >mRNA_E-fasciculatus_F_contig155.3842.1 ID=mRNA_E-fasciculatus_F_contig155.3842.1|Name=mRNA_E-fasciculatus_F_contig155.3842.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1974bp|location=Sequence derived from alignment at E-fasciculatus_F_contig155:31293..37013+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |