mRNA_E-fasciculatus_F_contig1549.3836.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1549.3836.1
Unique NamemRNA_E-fasciculatus_F_contig1549.3836.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: D8LTQ3_ECTSI (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ3_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 4.060e-84
Identity = 178/198 (89.90%), Postives = 182/198 (91.92%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVEGEPEAAAEAAPTXXXXXXXXXXXXXXXXXX---EAAPAXXXXXXXXX------AAPVEQPPAPVSSPEGLVFKRDWGSGVRGSALAHRMSAEQKKYIERFGSTLQQPLDP 569
            ALSPTMTHGNIG+WGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAV+GEPEAAA     XXXXXXXXXXXXXXXXXX   EAAPA XXXXXXXX      AAPVE+PPAPVSSPE LVFKRDWGSGVRGSALAHRMSAEQKKY+ERFGSTLQQPLDP
Sbjct:   25 ALSPTMTHGNIGSWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVQGEPEAAAXXXXXXXXXXXXXXXXXXXXXXXPAPEAAPAPXXXXXXXXXXXXTTAAPVERPPAPVSSPE-LVFKRDWGSGVRGSALAHRMSAEQKKYVERFGSTLQQPLDP 221          
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: A0A6H5KR44_9PHAE (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR44_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 6.090e-82
Identity = 172/196 (87.76%), Postives = 176/196 (89.80%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVEGEPEAAA---EAAPTXXXXXXXXXXXXXXXXXXEAAPAXXXXXXXXXAAP----VEQPPAPVSSPEGLVFKRDWGSGVRGSALAHRMSAEQKKYIERFGSTLQQPLDP 569
            ALSPTMTHGNIG+WGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAV+GEPEAAA   EAAPT XXXXXXX   XXXXXX EA   XXXXXXXXX       VEQPPAPVSS E LVFKRDWGSGVRGSALAHRMSAEQKKY++RFGSTLQQPLDP
Sbjct:   53 ALSPTMTHGNIGSWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVQGEPEAAAPAAEAAPTPXXXXXXXAAKXXXXXXPEAXXXXXXXXXXXXXXXXXXSVEQPPAPVSSQE-LVFKRDWGSGVRGSALAHRMSAEQKKYVKRFGSTLQQPLDP 247          
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: A0A836CM78_9STRA (Putative dihydrolipoyllysineresidue acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM78_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.530e-31
Identity = 97/200 (48.50%), Postives = 116/200 (58.00%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVEGEPE-------AAAEAAPTXXXXXXXXXXXXXXXXXXEAAPAXXXXXXXXXAAPVEQ--------PPAPVSSPEGLVFKRDWGSGVRGSALAHRMSAEQKKYIERFGSTLQQ 557
            ALSPTM HGN+  W K  GDEIAAGD++C+VETDKATVDF+AQD+ F+AK LV  G Q I VG PI +TV+D DSVAAF+ +EA A +  P         AA   P    XXX               P XXXXXXXXX A   +        P AP  +P   V   +WG  V  S L +R+S EQK Y  RFG+TLQ+
Sbjct:   47 ALSPTMEHGNLAKWLKAAGDEIAAGDIICQVETDKATVDFEAQDEGFVAKLLVPEGAQSITVGDPILITVEDKDSVAAFESYEAPATKEAPXXXXXXXXVAAATPPAVSPXXXAEAPKVEAVKPKTMPPPXXXXXXXXXXAKATEAAKSAQKAPDAPAGAPTASV---NWGQRVSRSPLYYRLSQEQKLYSSRFGATLQE 243          
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: A0A485LRT4_9STRA (Aste57867_24277 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRT4_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.540e-26
Identity = 81/212 (38.21%), Postives = 103/212 (48.58%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVEGEPEAAAEAAPTXXXXXXXXXXXXXXXXXXEAAPAXXXXXXXXXAAP---VEQP--PAPVSSPE-------------------GLVFKRDWGSGVRGSALAHRMSAEQKKYIERFGSTLQQPLD 566
            ALSPTM  GN+  W  +EGD I+AGDV+C++ETDKA VD++AQDD F+A+ LV  G + I VG PI VTVD AD VAAFKDF A+       AA  A                       AP            P   V  P  PAPV++P                     L     WG GV  SA++H ++  QK Y+  +GST   P++
Sbjct:   38 ALSPTMEQGNLAKWNLKEGDAISAGDVICQIETDKAIVDYEAQDDMFLARILVPEGAEGIVVGQPIMVTVDSADDVAAFKDFVADV------AATPAPAPKSPEEIPPKKHEVKVDPATQAPVVPMDFLVTSQTPQKIVAGPAIPAPVATPATXXXXXXXXXXXXXXXXXANLASFSKWGLGVNKSAISHSLAQRQKAYVALYGSTGTFPIE 243          
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: A0A7S2DWD0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWD0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.190e-26
Identity = 100/187 (53.48%), Postives = 118/187 (63.10%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVEGEPEAAAEAAPTXXXXXXXXXXXXXXXXXXEAAPAXXXXXXXXXAAPVEQPPAPVSSPEGLVFKRDWGSGVRGSALAHRMSAEQKKYIERFGSTLQQPL 563
            ALSPTM  G I  W K  GDEIAAGDVVC++ETDKATVDF+AQD+S +AK LVEAG + + VG PI V VD+ D VAAF DF  EA           A         XXXXXXXXXXX     XXXXXXXXX A V  P    ++     FKR WG+ V  S LA +M+ +Q +YI ++GSTLQ P+
Sbjct:   51 ALSPTMEMGTIAEWLKAPGDEIAAGDVVCQIETDKATVDFEAQDESVLAKILVEAGAE-VPVGVPICVMVDEVDDVAAFSDFVVEAXXXXXXXXXXTAAPVVTAPEPXXXXXXXXXXXXXXXXXXXXXXXXXXADVAPPQVTTTT---YAFKR-WGTKVSTSPLATKMAKDQIEYISKYGSTLQVPI 232          
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: A0A484DRZ7_BRELC (Lipoyl-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRZ7_BRELC)

HSP 1 Score: 117 bits (292), Expect = 2.190e-26
Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVEGEPEAAA--EAAPTXXXXXXXXXXXXXXXXXXEAAP---AXXXXXXXXXAAPVEQPPAPVSSPEGLVFKRDWGSGVRGSALAHRMSAEQKKYIERFGSTLQQPL 563
            +LSPTM  GN+  W  +EGD I+AGD+VCE+ETDKA VD++A DD F+AK L+  GT+++ VG P+ V VD+ DS+AAF+DF+ E     P A +  EA P                   E      +         AAP+ +  A  S+P     K  WG  ++ SA +  +   Q+ YI ++G T   P+
Sbjct:   36 SLSPTMETGNMSKWNIKEGDAISAGDIVCEIETDKAVVDYEATDDMFLAKILIPEGTENVPVGQPMMVVVDEEDSLAAFEDFKLEEASEPPAAPSHIEAKPAQKENVPMDMKAQDGPKSLETKTTNVSEASFPPPHVAAPIAKTTASSSTPSTAFLKESWGFNMKNSATSTSLLKRQQAYIAQYGLTGMTPV 227          
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: A0A7R9WUM2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WUM2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 7.670e-26
Identity = 92/190 (48.42%), Postives = 121/190 (63.68%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVEGEPEAAAEAAPTXXXXXXXXXXXXXXXXXXEAAPAXXXXXXXXXAAPVEQPPAPVSSPEGLVFKRDWGSGVR-GSALAHRMSAEQKKYIERFGSTLQQPLDP 569
            ALSPTM  G +  W  +EG E  AGD + ++ETDKA++DF+AQDD ++AK L +AG +D+ VGTPI VTV++ + VAAFKDF A A E E  AA      XXXXXXXXXXXXXXX    AA       XX  AA + +  APV S         WG   +  S +A  ++ +Q++YIE++G+T Q+PLDP
Sbjct:  107 ALSPTMDQGTLAEWYLEEGSEFIAGDALAKIETDKASIDFEAQDDGYIAKILKDAGAEDVPVGTPILVTVEEEEDVAAFKDFVAPAAEPEAAAAPXXXXXXXXXXXXXXXXXXXXVVAAAAXPVVDAVXXPSAADMLEAVAPVLS-------TGWGRLAQINSPIAKSLAKKQQEYIEKYGTTGQKPLDP 289          
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: A0A0P1AE60_PLAHL (Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE60_PLAHL)

HSP 1 Score: 115 bits (287), Expect = 1.060e-25
Identity = 70/190 (36.84%), Postives = 103/190 (54.21%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDF---EAEAVEGEPEAAAEAAPTXXXXXXXXXXXXXXXXXXEAAPAXXXXXXXXXAAPVEQPPAPVSSPEGLVFKRDWGSGVRGSALAHRMSAEQKKYIERFGSTLQQPL 563
            +LSPTM  GN+  W  +EGD I AGD+VCE+ETDKA VD++A DD F+AK L+  GT++I VG P+ V V+D +SVAAFKDF   EA      P ++ + +                    E +P               +  +PVS+    VF+  WG G++ SA++  +  +Q+ YI ++G T   P+
Sbjct:   39 SLSPTMETGNMSKWNTKEGDAITAGDIVCEIETDKAVVDYEATDDMFLAKILIPEGTENIPVGQPMMVVVEDQESVAAFKDFKLDEASVAPATPVSSKKPSNKSRSEPAMPQPSQKASPPMEVSPPTKTIEHTSTVLTNAKASSPVSATT-TVFEEKWGFGIKKSAISTSLLKKQQLYIAQYGVTGMTPV 227          
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: A0A6A4A4E2_9STRA (Lipoyl-binding domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4A4E2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.850e-25
Identity = 78/205 (38.05%), Postives = 104/205 (50.73%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVEGEPEAAA-----------EAA-------PTXXXXXXXXXXXXXXXXXXEAAPAXXXXXXXXXAAPVEQPPAPVSSPEGLVFKRDWGSGVRGSALAHRMSAEQKKYIERFGSTLQQPL 563
            ALSPTM  GN+  W  +EGD I AGD+VCE+ETDKA VD++A DD F+AK L+  GT++I VG P+ V  D+ +SVAAFKDF+ E     P A             E A       P                    A PA         AAP  +  APV+S    VF+  WG G++ SA++  +  +Q+ YI  +G T   P+
Sbjct:   39 ALSPTMETGNMSKWNLKEGDAITAGDIVCEIETDKAVVDYEATDDMFLAKILIPEGTENIPVGQPMMVVCDEEESVAAFKDFKLEDAPAAPAAPVLSGEEKPPKKEEVAVDVKTHEPVVPQDFLVTSQTTKKTVPGPAIPASPVAK----AAPAPKAAAPVAS---AVFEEKWGLGIKKSAISTSLIKKQQAYISLYGITGMTPV 236          
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Match: A0A1V9YB35_9STRA (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YB35_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.490e-25
Identity = 73/209 (34.93%), Postives = 102/209 (48.80%), Query Frame = 3
Query:    3 ALSPTMTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEAGTQDIAVGTPIFVTVDDADSVAAFKDFEAEA--------------------VEGEPEAAAEAAPTXXXXXXXXXXXXXXXXXXEAAPAXXXXXXXXXAAPVEQPPAPVSSPEGLVFKRDWGSGVRGSALAHRMSAEQKKYIERFGSTLQQPLDP 569
            ALSPTM  GN+  W  +EGD IAAGD++C++ETDKA VD++AQDD F+A+ LV  GT+ I VG PI +TVDDA +V AF DF  +A                    V+ +P   A  AP                      PA          AP      P ++   L     WG G++ S +++ +   QK Y+  +G+T   P++P
Sbjct:   32 ALSPTMEQGNLAKWNMKEGDAIAAGDIICQIETDKAIVDYEAQDDMFLARILVPEGTEGITVGQPIMITVDDAANVGAFADFVVDAAAVPTPAPKSPEEIPPKKEEVKVDP---ATNAPVAPADFLVTSQVPQKTVPGPTIPAPVAAPVAATXAPKAAXXXPATTSATLASFEKWGRGIQKSPISNSLLLRQKAYLALYGTTGTFPVEP 237          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1549.3836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTQ3_ECTSI4.060e-8489.90Lipoyl-binding domain-containing protein n=1 Tax=E... [more]
A0A6H5KR44_9PHAE6.090e-8287.76Lipoyl-binding domain-containing protein n=1 Tax=E... [more]
A0A836CM78_9STRA2.530e-3148.50Putative dihydrolipoyllysineresidue acetyltransfer... [more]
A0A485LRT4_9STRA1.540e-2638.21Aste57867_24277 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2DWD0_9STRA2.190e-2653.48Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A484DRZ7_BRELC2.190e-2636.98Lipoyl-binding domain-containing protein n=1 Tax=B... [more]
A0A7R9WUM2_9STRA7.670e-2648.42Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A0P1AE60_PLAHL1.060e-2536.84Pyruvate dehydrogenase complex dihydrolipoamide ac... [more]
A0A6A4A4E2_9STRA1.850e-2538.05Lipoyl-binding domain-containing protein n=4 Tax=P... [more]
A0A1V9YB35_9STRA2.490e-2534.93Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1549contigE-fasciculatus_F_contig1549:14441..16768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.1
Seed ortholog evalue1e-67
Seed eggNOG ortholog2880.D8LTQ3
KEGG rclassRC00004,RC02742,RC02857
KEGG koko:K00627,ko:K13997
KEGG ReactionR00209,R02569
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00307
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045254,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
EggNOG free text desc.dihydrolipoyllysine-residue acetyltransferase activity
EggNOG OGsCOG0508@1,KOG0557@2759
EC2.3.1.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size1505
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1549.3836.1prot_E-fasciculatus_F_contig1549.3836.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1549 15374..16751 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928025.5653-UTR-E-fasciculatus_F_contig1549:14440..153731622928025.5653-UTR-E-fasciculatus_F_contig1549:14440..15373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1549 14441..15373 -
1695995793.302662-UTR-E-fasciculatus_F_contig1549:14440..153731695995793.302662-UTR-E-fasciculatus_F_contig1549:14440..15373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1549 14441..15373 -
1622928025.6247234-UTR-E-fasciculatus_F_contig1549:16751..167681622928025.6247234-UTR-E-fasciculatus_F_contig1549:16751..16768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1549 16752..16768 -
1695995793.3579443-UTR-E-fasciculatus_F_contig1549:16751..167681695995793.3579443-UTR-E-fasciculatus_F_contig1549:16751..16768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1549 16752..16768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928025.5796838-CDS-E-fasciculatus_F_contig1549:15373..154431622928025.5796838-CDS-E-fasciculatus_F_contig1549:15373..15443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1549 15374..15443 -
1695995793.3163936-CDS-E-fasciculatus_F_contig1549:15373..154431695995793.3163936-CDS-E-fasciculatus_F_contig1549:15373..15443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1549 15374..15443 -
1622928025.594098-CDS-E-fasciculatus_F_contig1549:15594..159861622928025.594098-CDS-E-fasciculatus_F_contig1549:15594..15986Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1549 15595..15986 -
1695995793.326071-CDS-E-fasciculatus_F_contig1549:15594..159861695995793.326071-CDS-E-fasciculatus_F_contig1549:15594..15986Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1549 15595..15986 -
1622928025.6090858-CDS-E-fasciculatus_F_contig1549:16658..167511622928025.6090858-CDS-E-fasciculatus_F_contig1549:16658..16751Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1549 16659..16751 -
1695995793.336923-CDS-E-fasciculatus_F_contig1549:16658..167511695995793.336923-CDS-E-fasciculatus_F_contig1549:16658..16751Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1549 16659..16751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1549.3836.1

>prot_E-fasciculatus_F_contig1549.3836.1 ID=prot_E-fasciculatus_F_contig1549.3836.1|Name=mRNA_E-fasciculatus_F_contig1549.3836.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=185bp
MTHGNIGAWGKQEGDEIAAGDVVCEVETDKATVDFDAQDDSFMAKHLVEA
GTQDIAVGTPIFVTVDDADSVAAFKDFEAEAVEGEPEAAAEAAPTPEAAP
PAPVAKKEAPPAPEAAPAPAPAPAPAPAAPVEQPPAPVSSPEGLVFKRDW
GSGVRGSALAHRMSAEQKKYIERFGSTLQQPLDP*
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mRNA from alignment at E-fasciculatus_F_contig1549:14441..16768-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1549.3836.1 ID=mRNA_E-fasciculatus_F_contig1549.3836.1|Name=mRNA_E-fasciculatus_F_contig1549.3836.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2328bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1549:14441..16768- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCGCTTTCGCCGACGATGACACACGGCAACATCGGTGCCTGGGGCAAG CAGGAAGGGGACGAAATCGCGGCGGGAGACGTTGTATGCGAGGTTGAAAC GGATAAGGCGGTGAGACTCGAGTACTCTGGAATCTCATGCATGCATGCAT GCATGCCGAGAAAACAATGGCATTGTTTTTACCACTCGGACCCTTTTTTT TTTTGTGAGGGATGCGAACCATGGCTTTTCGCCATGTATTGCATAGTCAA TGAGCAAGTTTAGGTAGGGTAACGGTGTGACTCGATCAATCGACATCACT ACTCTCGCTCATACGACACTGCTGTGTTTCGAACACAATCGTTCGCTCTT CTTGGCGTTGTTTATATTCGCGTGCATCTCTGGCCGTTTGTGCTTCGAGG TGTGCGAAGTATATGCGATAGCGTACACAATACGGCATTTGTCGCCGCTC TGTGGCTCAGACACGGTCGTGTAAGTTAGAAACACCTGGGCCCTTAGTCT CCTTCAGTGCCATTTCGAGAAACACTGTTTCAAACACCCTCAGCACTTCC TGCGGGGTACTGTTACGGGCGCACACCAAGAAAAAAAAAAATTGAACCAC GAGAAGCCGTTCGTTTGCACGGCAACCGATACGTAGCGGTGAACCTGCCG AGAGAATGGGGAGAAGATTATTTCGGGTCCGTATGATGCCTCTGCAAGTC CACATTATTTCGTTCATCCCGCATGCGGAATTTGTTTGTTAACTCGTTAT CTTCTGCCGTTGCTCTCTCTATCTCTCTTCAGACCGTCGATTTCGACGCG CAAGACGACTCCTTCATGGCGAAGCACCTGGTCGAGGCCGGCACCCAGGA CATCGCCGTCGGGACCCCGATCTTCGTTACCGTGGACGACGCCGACTCCG TGGCGGCCTTCAAGGACTTCGAGGCGGAAGCAGTGGAGGGAGAACCGGAG GCGGCCGCGGAAGCCGCGCCCACCCCCGAGGCGGCCCCGCCAGCACCTGT CGCGAAGAAGGAAGCGCCGCCGGCGCCTGAAGCAGCACCGGCCCCCGCCC CCGCCCCTGCCCCTGCCCCCGCCGCACCTGTCGAGCAACCGCCTGCGCCT GTGTCGTCGCCGGAGGGGCTTGTTTTCAAGAGGGACTGGGGAAGCGGGGT CCGTGGTAGTGCGCTGGCTCATAGGTGGGTGGCAGAATTGTTAAGACCTT GTGATGGAAGTGTCGCGGACCGCCCTGTCCTTTCCACGACACCACTGCTG TGGCCGTCCACCATCTCATCTTGTCCCATCCGCGTTGAACTCACAATGTG CCAATTTCCACGCGCCGAACGACAGGATGTCAGCGGAGCAGAAGAAGTAC ATCGAGCGCTTCGGGTCTACCCTTCAGCAGCCCCTGGACCCATGAAGCGC GATTCCTAGGGTATTCGCGTCTTCCCCCTCAGCGCCCTTTGGTCGTTCAA GAGAGCGTATGCCATGTATCTGGTGTATGGCTTCGTGCAACAGGAACCAC TGCCGACATTTCTGGGACGGTTAAATGTTGAGTATGTAATTTGATGGCTG AAGCACCTCTTCTAAGCATAAAGCGATTTCATCCTTTTCCGGGTGCAGTA GAACTCGCTGGCACAGGCGAAAAAATTATTATATGGTAGTGAGCACATTT TTTGCCGTTCTTGGCTCGAACAGTACGGTGTGTTTTGTTGGTCGTGGGGG AGAATCAATATGACGATTCTCCACATGAAAGTGCGGCGAGGGCGTGGTGG GCGATTTTCAGTAGTGCCACGTGTGTATGTACTGTAGATCCTTGTTCGTG GTAGTACCAGGTCACGGAAGGAGCCGCTGAAAGTCGATCACAAAAATGCC ACACGTCCATCCCGGGAGCACCTCAAAAGCTTTTCCCATCCTTTTGGCTA AGTTGTCCAAGGATTGGATGCTGTTCGTGGTGTACCTTCCTCATATCGGC CATCGACAACCGTTCCCATTTCGTAGTTGTTACCCCAGTACCGAAGCTCC ATGAGCCCGTTTAGAACATCCGGGTGACATTCATCTGCCGACGATGATGC TAAGGACTTCACGCCACATGTGTTAATAGTACGGAGACCCAGCCGGGAGC AGCAGGCTGAATGTGGGCAACGTCCACCTATACCATTTAGTGCTGTTAAG TTTCGCTCCTGTGTGACTTGGGGCACATGAACCCGTGCGGAGCGTCCGGC ACGCGTGGGAATTTTGCGTACATGTTTTCGTAGCGCCCTGTGTACATAGG AATGGTGGTTGTTTGGAGGAGGAGATTGCTCGATGCAGTACCCTGCATGA CGTAAGATATCACACCCCCTGGACTGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1549:14441..16768-

>mRNA_E-fasciculatus_F_contig1549.3836.1 ID=mRNA_E-fasciculatus_F_contig1549.3836.1|Name=mRNA_E-fasciculatus_F_contig1549.3836.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1549:14441..16768- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACACACGGCAACATCGGTGCCTGGGGCAAGCAGGAAGGGGACGAAAT
CGCGGCGGGAGACGTTGTATGCGAGGTTGAAACGGATAAGGCGATGACAC
ACGGCAACATCGGTGCCTGGGGCAAGCAGGAAGGGGACGAAATCGCGGCG
GGAGACGTTGTATGCGAGGTTGAAACGGATAAGGCGACCGTCGATTTCGA
CGCGCAAGACGACTCCTTCATGGCGAAGCACCTGGTCGAGGCCGGCACCC
AGGACATCGCCGTCGGGACCCCGATCTTCGTTACCGTGGACGACGCCGAC
TCCGTGGCGGCCTTCAAGGACTTCGAGGCGGAAGCAGTGGAGGGAGAACC
GGAGGCGGCCGCGGAAGCCGCGCCCACCCCCGAGGCGGCCCCGCCAGCAC
CTGTCGCGAAGAAGGAAGCGCCGCCGGCGCCTGAAGCAGCACCGGCCCCC
GCCCCCGCCCCTGCCCCTGCCCCCGCCGCACCTGTCGAGCAACCGCCTGC
GCCTGTGTCGTCGCCGGAGGGGCTTGTTTTCAAGAGGGACTGGGGAAGCG
GGGTCCGTGGTAGTGCGCTGGCTCATAGACCGTCGATTTCGACGCGCAAG
ACGACTCCTTCATGGCGAAGCACCTGGTCGAGGCCGGCACCCAGGACATC
GCCGTCGGGACCCCGATCTTCGTTACCGTGGACGACGCCGACTCCGTGGC
GGCCTTCAAGGACTTCGAGGCGGAAGCAGTGGAGGGAGAACCGGAGGCGG
CCGCGGAAGCCGCGCCCACCCCCGAGGCGGCCCCGCCAGCACCTGTCGCG
AAGAAGGAAGCGCCGCCGGCGCCTGAAGCAGCACCGGCCCCCGCCCCCGC
CCCTGCCCCTGCCCCCGCCGCACCTGTCGAGCAACCGCCTGCGCCTGTGT
CGTCGCCGGAGGGGCTTGTTTTCAAGAGGGACTGGGGAAGCGGGGTCCGT
GGTAGTGCGCTGGCTCATAGGATGTCAGCGGAGCAGAAGAAGTACATCGA
GCGCTTCGGGTCTACCCTTCAGCAGCCCCTGGACCCATGAGATGTCAGCG
GAGCAGAAGAAGTACATCGAGCGCTTCGGGTCTACCCTTCAGCAGCCCCT
GGACCCATGA
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