mRNA_E-fasciculatus_F_contig15446.3815.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15446.3815.1
Unique NamemRNA_E-fasciculatus_F_contig15446.3815.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: D8LDP8_ECTSI (ARC5, dynamin-related protein involved in plastid division n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP8_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 5.850e-40
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV
Sbjct:  474 APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 544
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BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: A0A6H5JQ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ42_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.460e-39
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNG+NKLFGGAQYHRALREFNFAIRHMNAPEV
Sbjct:  234 APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGDNKLFGGAQYHRALREFNFAIRHMNAPEV 304
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BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: A0A835YPI8_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.230e-28
Identity = 49/71 (69.01%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            APP++FGETLE+EQL+AGSFI+   VD DQW+RLME+EVGN  ++LFGGAQYHR LREF +A+RHM++PE+
Sbjct:  459 APPDQFGETLESEQLQAGSFIDAGRVDTDQWDRLMEVEVGNSAHRLFGGAQYHRVLREFAYAVRHMSSPEI 529
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BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: A0A835Z2U6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.250e-26
Identity = 48/71 (67.61%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            APP++FGETLE+EQL+AGSF++   VD D+WERLME+EVGN  ++L GGAQYHR LREF FA+RHM +PE+
Sbjct:  135 APPDQFGETLESEQLQAGSFVDAGRVDGDKWERLMEVEVGNTNHRLVGGAQYHRVLREFAFAVRHMPSPEI 205
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: A0A835Z9B7_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.970e-24
Identity = 45/67 (67.16%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:   13 KFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            +FGETLE+EQL+AGSF++   VD D+W+RLME+EVGN  ++LFGGAQYHR LREF FA+RHM +PE+
Sbjct:  448 QFGETLESEQLQAGSFVDSGRVDGDKWDRLMEVEVGNTGHRLFGGAQYHRVLREFAFAVRHMPSPEI 514
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: A0A4D9DCK2_9STRA (Dynamin-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCK2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.330e-22
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            A P ++GETLE EQLR GSF++  DV A++WER+M+ EVGN  ++LFGGAQYHRALREF  A+R M  P +
Sbjct:  506 ASPAQYGETLETEQLRGGSFLDAKDVPAERWERIMDEEVGNAHHRLFGGAQYHRALREFTLAVRLMKTPTI 576
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BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: A0A7S2KY01_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KY01_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.060e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 APPEKFGETLEAEQLRAGSFIE----DSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            AP   +GETLE E L AGSF +       V    WE L++ EVGN +++L+GG+QYHRALREFN A R +  P +
Sbjct:  107 APANSYGETLEQENLAAGSFADIQGCPMSVSERTWEHLLQAEVGNTQHRLYGGSQYHRALREFNLATRCLRLPTI 181
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BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: A0A7S1YZI6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZI6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.450e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 APPEKFGETLEAEQLRAGSF--IEDSD--VDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            APP  FGET++ E + AGSF  ++ S   V    W+RL+E EVGN +++L+GG+QYHRA+REF+ A R M  P +
Sbjct:  126 APPSLFGETMQQENMAAGSFNNVQGSPMAVSPRTWDRLVEAEVGNRDHRLYGGSQYHRAIREFHLATRCMRLPTI 200
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: A0A7S0CK04_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK04_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.210e-13
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 APPEKFGETLEAEQLRAGSFIE----DSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            APP  FGETL+ E L AGSF +       V    W+ L+  EVGN E++L+GG+QYHRA+REF  A R +  P +
Sbjct:  303 APPALFGETLKQENLAAGSFHDIQCCPMAVSPKIWQHLITTEVGNTEHRLYGGSQYHRAMREFGLATRCLRLPTI 377
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Match: A0A7S4N729_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N729_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.150e-12
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 APPEKFGETLEAEQLRAGSFIEDSDVD------ADQ-WERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 213
            AP ++FGETL+ E    G+F   +DV       +DQ W+RL+  EVGN +++L+GG+QYHRALREF+ A R +  P +
Sbjct:  140 APSDRFGETLDVESANGGAF---NDVQGCPMAVSDQTWDRLLSAEVGNRQHRLYGGSQYHRALREFHLASRCLRLPTI 214
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15446.3815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDP8_ECTSI5.850e-40100.00ARC5, dynamin-related protein involved in plastid ... [more]
A0A6H5JQ42_9PHAE1.460e-3998.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPI8_9STRA8.230e-2869.01Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A835Z2U6_9STRA1.250e-2667.61Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z9B7_9STRA1.970e-2467.16Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A4D9DCK2_9STRA5.330e-2260.56Dynamin-type G domain-containing protein n=2 Tax=M... [more]
A0A7S2KY01_9STRA1.060e-1449.33Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1YZI6_9STRA1.450e-1449.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0CK04_9STRA6.210e-1348.00Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S4N729_9STRA1.150e-1246.15Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15446contigE-fasciculatus_F_contig15446:434..646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue2.3e-33
Seed eggNOG ortholog2880.D8LDP8
Preferred nameARC5
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006996,GO:0007031,GO:0007623,GO:0008017,GO:0008092,GO:0008150,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009657,GO:0009658,GO:0009707,GO:0009941,GO:0009987,GO:0010020,GO:0015631,GO:0016020,GO:0016043,GO:0016462,GO:0016559,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019867,GO:0031090,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0042170,GO:0042579,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043572,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048511,GO:0071840,GO:0098588,GO:0098805
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928022.5365827-CDS-E-fasciculatus_F_contig15446:433..6461622928022.5365827-CDS-E-fasciculatus_F_contig15446:433..646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15446 434..646 +
1695995792.1791408-CDS-E-fasciculatus_F_contig15446:433..6461695995792.1791408-CDS-E-fasciculatus_F_contig15446:433..646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15446 434..646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15446.3815.1prot_E-fasciculatus_F_contig15446.3815.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15446 434..646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15446.3815.1

>prot_E-fasciculatus_F_contig15446.3815.1 ID=prot_E-fasciculatus_F_contig15446.3815.1|Name=mRNA_E-fasciculatus_F_contig15446.3815.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=71bp
APPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGA
QYHRALREFNFAIRHMNAPEV
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mRNA from alignment at E-fasciculatus_F_contig15446:434..646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15446.3815.1 ID=mRNA_E-fasciculatus_F_contig15446.3815.1|Name=mRNA_E-fasciculatus_F_contig15446.3815.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=213bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15446:434..646+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCCCGCCCGAGAAATTCGGCGAGACGCTGGAGGCCGAGCAGCTGAGGGC
CGGGTCGTTCATCGAGGACTCTGACGTGGACGCGGACCAGTGGGAGAGGC
TGATGGAGATTGAGGTCGGCAACGGGGAGAACAAGCTGTTCGGGGGCGCG
CAGTACCACCGGGCCCTCCGCGAGTTCAACTTTGCGATCCGGCACATGAA
CGCTCCTGAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15446:434..646+

>mRNA_E-fasciculatus_F_contig15446.3815.1 ID=mRNA_E-fasciculatus_F_contig15446.3815.1|Name=mRNA_E-fasciculatus_F_contig15446.3815.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15446:434..646+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCCCGCCCGAGAAATTCGGCGAGACGCTGGAGGCCGAGCAGCTGAGGGC
CGGGTCGTTCATCGAGGACTCTGACGTGGACGCGGACCAGTGGGAGAGGC
TGATGGAGATTGAGGTCGGCAACGGGGAGAACAAGCTGTTCGGGGGCGCG
CAGTACCACCGGGCCCTCCGCGAGTTCAACTTTGCGATCCGGCACATGAA
CGCTCCTGAGGTGGCCCCGCCCGAGAAATTCGGCGAGACGCTGGAGGCCG
AGCAGCTGAGGGCCGGGTCGTTCATCGAGGACTCTGACGTGGACGCGGAC
CAGTGGGAGAGGCTGATGGAGATTGAGGTCGGCAACGGGGAGAACAAGCT
GTTCGGGGGCGCGCAGTACCACCGGGCCCTCCGCGAGTTCAACTTTGCGA
TCCGGCACATGAACGCTCCTGAGGTG
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