mRNA_E-fasciculatus_F_contig15439.3811.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15439.3811.1
Unique NamemRNA_E-fasciculatus_F_contig15439.3811.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15439.3811.1 vs. uniprot
Match: D7G2I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I5_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 1.880e-87
Identity = 226/321 (70.40%), Postives = 236/321 (73.52%), Query Frame = 1 
Query:    1 PSRINQ-DQHLDRLGNILRSLRTRPSERVPSSSAAQLTEQVHRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHXXXXXXXXXXXXXXXQEHERFLHVSGSSQSSRSRPTRSRTVSQSWQPEVTITTTTPALHSHRCSATVATDGRLADKPESYARKQDAPPRRQRQAEMGVVRRSVAPPTPQLHERVDGADDEDPRLGG--------VDSGFPPSAPS-STVVRPGVAGAEASSCGDGGGAGTAAAAVAGTTKSVRGPSLRERAIRTWWRGLSCGVCFAAGAWAREGHGAFGALLALTAVCAEMMFHEHAP 933
            PS++ + DQHLDRLG+ILRSLR RPS+RV  SSAAQLTEQ  R+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXX                                        PALHSHRCS T  TDGRLADKPES ARKQDAP RR RQAE+G V RSVAPPTPQ HERV GADD+ PRLG          DSGF PSAPS   VVRPGVAGAEA SCGDGGGAGTAAA VA TTKSVRGPSLRERAIRTWWRGLSCG+CFAAGAWAREGHG FGALLAL AVC EM+FHE AP
Sbjct:    5 PSKMQEADQHLDRLGSILRSLRARPSDRVFFSSAAQLTEQARRNENKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------XXXXXXXXXXXXXPALHSHRCSGTATTDGRLADKPESDARKQDAPLRRPRQAEVGDVGRSVAPPTPQFHERVSGADDKGPRLGXXXXXXXXXADSGFVPSAPSIKVVVRPGVAGAEAGSCGDGGGAGTAAA-VAETTKSVRGPSLRERAIRTWWRGLSCGICFAAGAWAREGHGTFGALLALAAVCGEMVFHERAP 308
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BLAST of mRNA_E-fasciculatus_F_contig15439.3811.1 vs. uniprot
Match: A0A6H5L086_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L086_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 2.270e-87
Identity = 215/315 (68.25%), Postives = 224/315 (71.11%), Query Frame = 1 
Query:   16 QDQHLDRLGNILRSLRTRPSERVPSSSAAQLTEQVHRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHXXXXXXXXXXXXXXXQEHERFLHVSGSSQSSRSRPTRSRTVSQSWQPEVTITTTTPALHSHRCSATVATDGRLADKPESYARKQDAPPRRQRQAEMGVVRRSVAPPTPQLHERVDGADDEDPRLGGV--------DSGFPPSAPSSTVV-RPGVAGAEASSCGDGGGAGTAAAAVAGTTKSVRGPSLRERAIRTWWRGLSCGVCFAAGAWAREGHGAFGALLALTAVCAEMMFHEHAP 933
            +DQHLDRLG+ILRSLR RPS+RV SSSAAQL EQ  RH         XXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXX                                        PALHSHRCS T +T  RLADKPES ARKQDAP RR RQA+MG VRRSVAPPTPQ HERV GADD+ PRLG          D  F P APSSTVV RPGV GAEA SCGDGGG GTAA+AVA TTK VRGPSLRERAIRTWWRGLSCG+CFAAGAWAREGHG FGALLAL AVC EM+FHEHAP
Sbjct:   16 RDQHLDRLGSILRSLRARPSDRVFSSSAAQLNEQARRHENNHVHQPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------XXXXXXXXXXXXXPALHSHRCSGTTSTADRLADKPESDARKQDAPLRRPRQADMGAVRRSVAPPTPQFHERVGGADDKGPRLGNXXXXXXXXPDGDFVPWAPSSTVVVRPGVVGAEAGSCGDGGGTGTAASAVAETTKRVRGPSLRERAIRTWWRGLSCGICFAAGAWAREGHGTFGALLALAAVCGEMVFHEHAP 314
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15439.3811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I5_ECTSI1.880e-8770.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L086_9PHAE2.270e-8768.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15439contigE-fasciculatus_F_contig15439:1978..2910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001650.1
Exons1
Model size933
Cds size933
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928021.737713-CDS-E-fasciculatus_F_contig15439:1977..29101622928021.737713-CDS-E-fasciculatus_F_contig15439:1977..2910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15439 1978..2910 -
1695995791.9551578-CDS-E-fasciculatus_F_contig15439:1977..29101695995791.9551578-CDS-E-fasciculatus_F_contig15439:1977..2910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15439 1978..2910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15439.3811.1prot_E-fasciculatus_F_contig15439.3811.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15439 1978..2910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15439.3811.1

>prot_E-fasciculatus_F_contig15439.3811.1 ID=prot_E-fasciculatus_F_contig15439.3811.1|Name=mRNA_E-fasciculatus_F_contig15439.3811.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=311bp
PSRINQDQHLDRLGNILRSLRTRPSERVPSSSAAQLTEQVHRHENEHEHQ
PEHLHQHHRHRREQQHPQRQQLHQPQPQPQQHQQLHQSQPRPQQHQQQEH
ERFLHVSGSSQSSRSRPTRSRTVSQSWQPEVTITTTTPALHSHRCSATVA
TDGRLADKPESYARKQDAPPRRQRQAEMGVVRRSVAPPTPQLHERVDGAD
DEDPRLGGVDSGFPPSAPSSTVVRPGVAGAEASSCGDGGGAGTAAAAVAG
TTKSVRGPSLRERAIRTWWRGLSCGVCFAAGAWAREGHGAFGALLALTAV
CAEMMFHEHAP
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mRNA from alignment at E-fasciculatus_F_contig15439:1978..2910-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15439.3811.1 ID=mRNA_E-fasciculatus_F_contig15439.3811.1|Name=mRNA_E-fasciculatus_F_contig15439.3811.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=933bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15439:1978..2910- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCTCCCGCATCAACCAGGATCAGCACTTGGACCGCCTGGGAAACATTCT
ACGTAGCCTTAGGACGCGACCCTCCGAGCGAGTACCCTCTTCCAGCGCTG
CCCAGCTCACTGAACAAGTCCACCGGCATGAGAACGAGCACGAGCATCAG
CCCGAGCACCTGCATCAGCACCATAGGCATCGAAGAGAACAACAGCATCC
ACAGCGTCAGCAGCTGCATCAGCCACAGCCACAGCCTCAGCAGCACCAGC
AGCTTCATCAGTCACAACCGCGGCCTCAGCAGCACCAGCAGCAAGAGCAC
GAGCGGTTCCTGCACGTGTCCGGGTCGTCGCAGTCGTCACGATCACGACC
AACGCGATCGCGCACGGTGTCGCAATCCTGGCAGCCCGAGGTGACAATCA
CAACGACAACGCCCGCGCTCCACTCTCACCGGTGTTCGGCGACGGTTGCG
ACGGACGGCCGACTCGCCGACAAGCCGGAAAGCTATGCGAGAAAACAGGA
CGCTCCGCCCCGGCGGCAACGGCAAGCGGAGATGGGGGTTGTGCGCCGCA
GCGTAGCGCCGCCGACGCCCCAGCTCCACGAGCGCGTGGATGGTGCTGAT
GATGAGGATCCCCGCCTTGGTGGCGTTGATAGCGGCTTCCCTCCTTCGGC
GCCGAGTAGCACAGTAGTCCGACCTGGAGTTGCAGGCGCCGAGGCCAGTA
GTTGCGGGGACGGTGGCGGTGCTGGCACTGCTGCTGCTGCTGTGGCTGGA
ACAACGAAAAGCGTTCGTGGGCCGTCGCTCAGGGAACGGGCGATTCGCAC
GTGGTGGAGAGGCTTGTCTTGCGGCGTTTGTTTCGCGGCCGGGGCGTGGG
CGCGTGAGGGACACGGGGCGTTCGGCGCCCTGTTGGCGTTGACTGCGGTG
TGTGCTGAAATGATGTTCCACGAACACGCCCCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15439:1978..2910-

>mRNA_E-fasciculatus_F_contig15439.3811.1 ID=mRNA_E-fasciculatus_F_contig15439.3811.1|Name=mRNA_E-fasciculatus_F_contig15439.3811.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1866bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15439:1978..2910- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCTCCCGCATCAACCAGGATCAGCACTTGGACCGCCTGGGAAACATTCT
ACGTAGCCTTAGGACGCGACCCTCCGAGCGAGTACCCTCTTCCAGCGCTG
CCCAGCTCACTGAACAAGTCCACCGGCATGAGAACGAGCACGAGCATCAG
CCCGAGCACCTGCATCAGCACCATAGGCATCGAAGAGAACAACAGCATCC
ACAGCGTCAGCAGCTGCATCAGCCACAGCCACAGCCTCAGCAGCACCAGC
AGCTTCATCAGTCACAACCGCGGCCTCAGCAGCACCAGCAGCAAGAGCAC
GAGCGGTTCCTGCACGTGTCCGGGTCGTCGCAGTCGTCACGATCACGACC
AACGCGATCGCGCACGGTGTCGCAATCCTGGCAGCCCGAGGTGACAATCA
CAACGACAACGCCCGCGCTCCACTCTCACCGGTGTTCGGCGACGGTTGCG
ACGGACGGCCGACTCGCCGACAAGCCGGAAAGCTATGCGAGAAAACAGGA
CGCTCCGCCCCGGCGGCAACGGCAAGCGGAGATGGGGGTTGTGCGCCGCA
GCGTAGCGCCGCCGACGCCCCAGCTCCACGAGCGCGTGGATGGTGCTGAT
GATGAGGATCCCCGCCTTGGTGGCGTTGATAGCGGCTTCCCTCCTTCGGC
GCCGAGTAGCACAGTAGTCCGACCTGGAGTTGCAGGCGCCGAGGCCAGTA
GTTGCGGGGACGGTGGCGGTGCTGGCACTGCTGCTGCTGCTGTGGCTGGA
ACAACGAAAAGCGTTCGTGGGCCGTCGCTCAGGGAACGGGCGATTCGCAC
GTGGTGGAGAGGCTTGTCTTGCGGCGTTTGTTTCGCGGCCGGGGCGTGGG
CGCGTGAGGGACACGGGGCGTTCGGCGCCCTGTTGGCGTTGACTGCGGTG
TGTGCTGAAATGATGTTCCACGAACACGCCCCTCCCTCCCGCATCAACCA
GGATCAGCACTTGGACCGCCTGGGAAACATTCTACGTAGCCTTAGGACGC
GACCCTCCGAGCGAGTACCCTCTTCCAGCGCTGCCCAGCTCACTGAACAA
GTCCACCGGCATGAGAACGAGCACGAGCATCAGCCCGAGCACCTGCATCA
GCACCATAGGCATCGAAGAGAACAACAGCATCCACAGCGTCAGCAGCTGC
ATCAGCCACAGCCACAGCCTCAGCAGCACCAGCAGCTTCATCAGTCACAA
CCGCGGCCTCAGCAGCACCAGCAGCAAGAGCACGAGCGGTTCCTGCACGT
GTCCGGGTCGTCGCAGTCGTCACGATCACGACCAACGCGATCGCGCACGG
TGTCGCAATCCTGGCAGCCCGAGGTGACAATCACAACGACAACGCCCGCG
CTCCACTCTCACCGGTGTTCGGCGACGGTTGCGACGGACGGCCGACTCGC
CGACAAGCCGGAAAGCTATGCGAGAAAACAGGACGCTCCGCCCCGGCGGC
AACGGCAAGCGGAGATGGGGGTTGTGCGCCGCAGCGTAGCGCCGCCGACG
CCCCAGCTCCACGAGCGCGTGGATGGTGCTGATGATGAGGATCCCCGCCT
TGGTGGCGTTGATAGCGGCTTCCCTCCTTCGGCGCCGAGTAGCACAGTAG
TCCGACCTGGAGTTGCAGGCGCCGAGGCCAGTAGTTGCGGGGACGGTGGC
GGTGCTGGCACTGCTGCTGCTGCTGTGGCTGGAACAACGAAAAGCGTTCG
TGGGCCGTCGCTCAGGGAACGGGCGATTCGCACGTGGTGGAGAGGCTTGT
CTTGCGGCGTTTGTTTCGCGGCCGGGGCGTGGGCGCGTGAGGGACACGGG
GCGTTCGGCGCCCTGTTGGCGTTGACTGCGGTGTGTGCTGAAATGATGTT
CCACGAACACGCCCCT
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