mRNA_E-fasciculatus_F_contig15430.3808.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15430.3808.1
Unique NamemRNA_E-fasciculatus_F_contig15430.3808.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15430.3808.1 vs. uniprot
Match: A0A6H5J9G6_9PHAE (Tup_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9G6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.180e-31
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 2 
Query:    2 VVLPGMAMRGRGHGEDDYGGARGQGPNGQTLEPLTKRPRLADLQGPPGPLPPHVLHPPHGFTQS 193
            VVLPGMAMRGR HGEDDYGG RGQ PNGQTLEPL+KRPRLADLQGPPGPLPPHVLHPP GF+QS
Sbjct:  195 VVLPGMAMRGRDHGEDDYGGGRGQRPNGQTLEPLSKRPRLADLQGPPGPLPPHVLHPPPGFSQS 258
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BLAST of mRNA_E-fasciculatus_F_contig15430.3808.1 vs. uniprot
Match: D8LEC5_ECTSI (Tup_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.320e-24
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:   53 YGGARGQGPNGQTLEPLTKRPRLADLQGPPGPLPPHVLHPPHGFTQSQHQQ 205
            YGG RGQGPNGQTLEPL+KRPRLADLQGPPGPLPPHVLHPPHGF+QSQHQQ
Sbjct:  264 YGGGRGQGPNGQTLEPLSKRPRLADLQGPPGPLPPHVLHPPHGFSQSQHQQ 314
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15430.3808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9G6_9PHAE1.180e-3190.63Tup_N domain-containing protein (Fragment) n=1 Tax... [more]
D8LEC5_ECTSI1.320e-2494.12Tup_N domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15430contigE-fasciculatus_F_contig15430:2147..2908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D8LEC5
Preferred nameTUP1
KEGG koko:K06666,ko:K14963
KEGG Pathwayko04011,ko04111,ko04934,map04011,map04111,map04934
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000429,GO:0000430,GO:0000433,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0006996,GO:0007154,GO:0007155,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008289,GO:0009267,GO:0009372,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019747,GO:0019899,GO:0022414,GO:0022607,GO:0022610,GO:0030154,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0033554,GO:0033993,GO:0034728,GO:0035091,GO:0035690,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0036166,GO:0036170,GO:0036171,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042304,GO:0042393,GO:0042493,GO:0042594,GO:0042826,GO:0043044,GO:0043156,GO:0043157,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045814,GO:0045827,GO:0045833,GO:0045892,GO:0045893,GO:0045894,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046677,GO:0046688,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051828,GO:0051832,GO:0051834,GO:0052173,GO:0060255,GO:0060258,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071103,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071396,GO:0071470,GO:0071472,GO:0071473,GO:0071496,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090568,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0098609,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1901700,GO:1901701,GO:1901981,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_001730.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15430.3808.1prot_E-fasciculatus_F_contig15430.3808.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15430 2163..2908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928021.5957568-UTR-E-fasciculatus_F_contig15430:2146..21621622928021.5957568-UTR-E-fasciculatus_F_contig15430:2146..2162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15430 2147..2162 +
1695995791.902799-UTR-E-fasciculatus_F_contig15430:2146..21621695995791.902799-UTR-E-fasciculatus_F_contig15430:2146..2162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15430 2147..2162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928021.6084151-CDS-E-fasciculatus_F_contig15430:2162..22631622928021.6084151-CDS-E-fasciculatus_F_contig15430:2162..2263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15430 2163..2263 +
1695995791.9155247-CDS-E-fasciculatus_F_contig15430:2162..22631695995791.9155247-CDS-E-fasciculatus_F_contig15430:2162..2263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15430 2163..2263 +
1622928021.6221404-CDS-E-fasciculatus_F_contig15430:2727..29081622928021.6221404-CDS-E-fasciculatus_F_contig15430:2727..2908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15430 2728..2908 +
1695995791.9264827-CDS-E-fasciculatus_F_contig15430:2727..29081695995791.9264827-CDS-E-fasciculatus_F_contig15430:2727..2908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15430 2728..2908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15430.3808.1

>prot_E-fasciculatus_F_contig15430.3808.1 ID=prot_E-fasciculatus_F_contig15430.3808.1|Name=mRNA_E-fasciculatus_F_contig15430.3808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
MAMRGRGHGEDDYGGARGQGPNGQTLEPLTKRPRLADLQGPPGPLPPHVL
HPPHGFTQSQHQQHQQHPQQHQQHPPPHHKGGFFGGRPGAPPAG
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mRNA from alignment at E-fasciculatus_F_contig15430:2147..2908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15430.3808.1 ID=mRNA_E-fasciculatus_F_contig15430.3808.1|Name=mRNA_E-fasciculatus_F_contig15430.3808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15430:2147..2908+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTTGTGCTGCCCGGGATGGCGATGAGGGGCCGGGGCCATGGGGAGGATG
ACTACGGCGGCGCGAGGGGCCAAGGGCCAAATGGGCAGACGCTGGAGCCT
CTGACCAAGCGACCAAGGTGGGCGGAGTAGTTTGAGGTCACGTCGACGAA
TGTGTGGCATCTGGTGTTTGATGCCCTCGACCAAGAGTTGCCTACTATCT
TCGTTGCGGCAGGGGATTTTCTGTCCTGTAGGGGGAGGGGAATGGTCGAA
GGGGAGATAGTTGTTGCGAAGACGTTTGTGTGTCTAAGTTTTTTCGTCGA
TCGGTGCTGAGAGAAAGAGAGCCGCCTGTGAGATGCAATCTGACGTGCTG
ATCCTGTCGCAACACCAGATGCCTCAAATTAACCGACAGCCTTCGTTGCA
CGTACAGCAAGCCACAGACGGTCAGAGACATTCCTAGATACCTTCGTATG
CGGTCAGGTCCAGCGACGTCGCCACGCCCTGTCGGCGCCCCTTGGCCTCC
CCTCCGAAAGCCCTGTTTTTCGGCTCGTTTGTGTTGATGAACTGACGCTG
GCCCAATCCCCTTTGCACATGACAACACCAGGCTGGCAGACCTGCAGGGA
CCCCCCGGTCCCTTGCCGCCCCACGTGCTCCACCCCCCACACGGCTTCAC
CCAATCGCAACACCAGCAACACCAGCAGCACCCACAGCAGCACCAACAAC
ACCCGCCGCCGCACCACAAGGGAGGGTTCTTTGGTGGACGCCCGGGAGCA
CCCCCCGCCGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15430:2147..2908+

>mRNA_E-fasciculatus_F_contig15430.3808.1 ID=mRNA_E-fasciculatus_F_contig15430.3808.1|Name=mRNA_E-fasciculatus_F_contig15430.3808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15430:2147..2908+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGATGAGGGGCCGGGGCCATGGGGAGGATGACTACGGCGGCGCGAG
GGGCCAAGGGCCAAATGGGCAGACGCTGGAGCCTCTGACCAAGCGACCAA
GATGGCGATGAGGGGCCGGGGCCATGGGGAGGATGACTACGGCGGCGCGA
GGGGCCAAGGGCCAAATGGGCAGACGCTGGAGCCTCTGACCAAGCGACCA
AGGCTGGCAGACCTGCAGGGACCCCCCGGTCCCTTGCCGCCCCACGTGCT
CCACCCCCCACACGGCTTCACCCAATCGCAACACCAGCAACACCAGCAGC
ACCCACAGCAGCACCAACAACACCCGCCGCCGCACCACAAGGGAGGGTTC
TTTGGTGGACGCCCGGGAGCACCCCCCGCCGGTGCTGGCAGACCTGCAGG
GACCCCCCGGTCCCTTGCCGCCCCACGTGCTCCACCCCCCACACGGCTTC
ACCCAATCGCAACACCAGCAACACCAGCAGCACCCACAGCAGCACCAACA
ACACCCGCCGCCGCACCACAAGGGAGGGTTCTTTGGTGGACGCCCGGGAG
CACCCCCCGCCGGT
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