mRNA_E-fasciculatus_F_contig1543.3807.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: D7G669_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G669_ECTSI) HSP 1 Score: 1333 bits (3450), Expect = 0.000e+0 Identity = 855/1017 (84.07%), Postives = 864/1017 (84.96%), Query Frame = 2
Query: 2 GASAPLGRLLPLWDYLLVRHDKHFGFFLXXXXXXXXXXXLLLATGPQLRLLLAETLSPSAMASLLVDGEESLEGEAEATVVGPALTLWCQEAEALDLATPESFRHHLALIGEIAEAEHEAAVRARAQRRADGGRDGPDGKAAAVPASSGSKEGGSAADGSMPSAPTSPRPQAAGQAGTEA-SKGLSHPSLLRMRTMMKTAGDKLAADLKNLKLARPNPENSRQSPEDLAAPTELSLPQLCLAVSAKELVAGVSGRRRERAGTGGGXXXXEAGGAKGVEAEGGQGALFRQRQPLAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAHELVMDTMAAGTEGEGGVALSSAIVDHIAAACRLCLVGKPGGAGAPGGSKFPLSPPLWARMGAADSSTHGIAASADNSSKGSSGKKGSESPFFPAKSPGTEKTSSXXXXXXXXXXXXXXISGGEGSGHDSSAXXXXXXXXXXXXXXXXXXXXNLFKGGAMFSGMKINMGDIFKKGAAASNNAEGGVGAETEGGSNTTDAAPA---DRPEQAGKGDGEPATDLAAKLRISLGRFGSLKEVKKDAEGAGSEAATAAXXXXXS----SEKDKDSGIGSLFRKAQSFKAADVAAAFADLRDGPKTFGAASPTGTTQARGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGELFVIGDDESETSENPDSDFEGFDGEHPPPRAGGARTAADKEVALLEHRLSGQIKGATMVVDDFLKVPGAKVFTVTKHKVTFHEVDATPETPSPDSTKASPENDTEGGDA--KASTAEE-GVAGDSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVRAVTELERVVFLSRERILVLACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHYLAPGGPPEDGSPGATKRNVYRFGLDDKEAFIRIIRGALQRFQA 3019
GASAPLGRLLPLWDYLLVRHDKHFGFFLXXXXXXXXXXXLLLATGPQLRLLLAETLSPSAMASLLVDGEESLEGE EAEALDLATPESFRHHLALIGEIAEAEHEAAVRARAQRR +GG DGPDGKAAAVPASSGSKEGG AADGS PSAPTSPRPQAAGQAGTEA SKGL HPSLLRMRTMMKTAGDKLAADLKNLKLARPNPENSRQS EDLA PTELSLPQLCLAVSAKELVAGVSGRRRERA TG XXXX GAKGV+A GGQGALFRQRQPLAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAHELV DTMAAG EGEG VALS+ IVDHIAAACRLCLV KPGGAGA GGSKFPLSPPLWARMGAADSSTHGI AS D+SSKGS GKKGSESPFFPAKSPGTEKTS XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXNLFKGG MFSGMKINMG+IFKKGAA S D+PE+A KGDGEPATDLAAKLRISLGRFGSLKEVKKDAEGAGSEAA XXXXX SEKDKDSGIGSLFRKAQSFKAADVAAAFADLRDGPKTFG ASPTGTTQARG XXXXXXXAGELFVIGDDESETSENPDSDFEGFDGEHPPPRAGGARTAADKEVALLEHRLSGQIKGATMVVD+FLKVPGAKVFTVTKHKVTFH+VDATPE KASTAEE GVA DSE XXXXXXXXXXXXXXXX RVRAVTELERVVFLSRERILVLACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHYLAPGGP EDGSPGATKRNVYRFGLDDKEAFIRIIRGALQRFQA
Sbjct: 445 GASAPLGRLLPLWDYLLVRHDKHFGFFLXXXXXXXXXXXLLLATGPQLRLLLAETLSPSAMASLLVDGEESLEGE---------------EAEALDLATPESFRHHLALIGEIAEAEHEAAVRARAQRRVEGGSDGPDGKAAAVPASSGSKEGGPAADGSTPSAPTSPRPQAAGQAGTEAASKGLGHPSLLRMRTMMKTAGDKLAADLKNLKLARPNPENSRQSREDLAPPTELSLPQLCLAVSAKELVAGVSGRRRERAATGDXXXXXXXXGAKGVDAGGGQGALFRQRQPLAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAHELVTDTMAAGAEGEGDVALSAVIVDHIAAACRLCLVQKPGGAGAAGGSKFPLSPPLWARMGAADSSTHGIIASTDDSSKGS-GKKGSESPFFPAKSPGTEKTSXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXNLFKGGTMFSGMKINMGEIFKKGAATSXXXXXXXXXXXXXXXXXXXXXXXXXXDKPEEAAKGDGEPATDLAAKLRISLGRFGSLKEVKKDAEGAGSEAAXXXXXXXXXXXXXSEKDKDSGIGSLFRKAQSFKAADVAAAFADLRDGPKTFGVASPTGTTQARGAAAGRGGRGGVQQVVEVEEVLGEXXXXXXXAGELFVIGDDESETSENPDSDFEGFDGEHPPPRAGGARTAADKEVALLEHRLSGQIKGATMVVDEFLKVPGAKVFTVTKHKVTFHDVDATPEAXXXXXXXXXXXXXXXXXXXXXKASTAEEKGVAADSEVETSGNADGEXXXXXXXXXXXXXXXXKM--RVRAVTELERVVFLSRERILVLACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHYLAPGGPQEDGSPGATKRNVYRFGLDDKEAFIRIIRGALQRFQA 1440
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: K8YQB7_NANGC (Tbc1 domain family member 23-like protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQB7_NANGC) HSP 1 Score: 115 bits (288), Expect = 2.720e-23 Identity = 82/207 (39.61%), Postives = 115/207 (55.56%), Query Frame = 2
Query: 875 LAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIGS---QR-------AARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAHE-LVMDTMAAGTEGEGGVALSS----AIVDHIAAACRLCL------VGKPGGAGAPGGSKFPLSPPLWARMGAADSST 1432
L + A+DCRPK+ V GRFPTAYH+DPS +++PEE+ +++ EP + H+ L+G+G GLA + GGG G+ QR A R D +++T ALF +K+GFPYVS+L+GG+AA H L+M T + G A SS A++DH+ + CR+C K A G S PLSP A+ SST
Sbjct: 112 LRYLALDCRPKEHVAMGRFPTAYHVDPSRLDDPEEIT-RLLATLEPFKGSRHLLLMGTG---ASGGGLAPAV-PKEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQGGFAAIHAFLLMKTRESSRASSAGSARSSLTLAALIDHVPSQCRMCKHEALLRFHK-----ASGSSSLPLSPSPPAKASPGSSST 308
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: W7U2B4_9STRA (Tbc1 domain family member 23 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B4_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.030e-21 Identity = 81/207 (39.13%), Postives = 115/207 (55.56%), Query Frame = 2
Query: 875 LAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIGS---QR-------AARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAHE-LVMDTMAAGTEGEGGVALS----SAIVDHIAAACRLCL------VGKPGGAGAPGGSKFPLSPPLWARMGAADSST 1432
L + A+DCRPK+ V GRFPTAYH+DPS +++PEE+ +++ EP + H+ L+G+G GLA + GGG G+ QR A R D +++T ALF +K+GFPYVS+L+GG+AA H L+M T + G A S +A++DH+ + CR+C K A G S PLSP A+ SST
Sbjct: 606 LRYLALDCRPKEHVAMGRFPTAYHVDPSRLDDPEEIT-RLLATLEPFKGSRHLLLMGTG---ASGGGLAPAV-PKEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQGGFAAIHAFLLMKTRESSRASSAGSARSPLTLAALIDHVPSQCRMCKHEALLRFHK-----ASGSSSLPLSPSPPAKASPGSSST 802
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: A0A4D9DAX1_9STRA (Rhodanese domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX1_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.750e-21 Identity = 80/209 (38.28%), Postives = 115/209 (55.02%), Query Frame = 2
Query: 875 LAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIGS---QR-------AARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAHE-LVMDTMAAGTEGEGGVALS----SAIVDHIAAACRLCL------VGKPGGAGAPGGSKFPLSPPLWARMGAADSSTHG 1438
L + A+DCRPK+ V GRFPTAYH+DP +++PEE+ +++ EP + H+ L+G+G GLA + GGG G+ QR A R D +++T ALF +K+GFPYVS+L+GG+AA H L+M T + G A S +A++DH+ + CR+C K A G S PLSP A+ SS+ G
Sbjct: 1037 LRYLALDCRPKEHVAMGRFPTAYHVDPGRLDDPEEIT-RLLATLEPFKGSRHLLLMGTG---ASGGGLAPAV-PKEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQGGFAAIHAFLLMKTRESSRASSAGSARSPLTLAALIDHVPSQCRMCKHEALLRFHK-----ASGSSSLPLSPSPPAKASPGSSSSTG 1235
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: A0A5D6XZM4_9STRA (Rhodanese domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZM4_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 7.780e-16 Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 2
Query: 869 QPLAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVG-GGIGSQRAARDDY--------SYVNTCALFFVKRGFPYVSVLEGGYAAAHELVMDTMAAGTEGEGGVALSSAIVDHIAAACRLC 1333
+ + +F VDCR ++ G+ PTA+H DP A+ + ++ E ++ PL+ + H+C++G G G R G +VG G GS A RDD + VN+ LF K+GFP+VSVL+GGYAAAH L+ + + IVDH AA C C
Sbjct: 550 EKIRYFIVDCRSDDELRGGQIPTAFHFDPDAVTD-RQVLEHVLATLNPLKGKVHLCVMGHGYG--RIVGEIREQQRRVGPAGAGSPFAQRDDLFEAYATNLTRVNSALLFLTKQGFPFVSVLDGGYAAAHSLLYHSAHLTVDD---------IVDHDAAQCAFC 701
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: A0A8K1FFN4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFN4_PYTOL) HSP 1 Score: 93.2 bits (230), Expect = 3.090e-15 Identity = 57/168 (33.93%), Postives = 86/168 (51.19%), Query Frame = 2
Query: 869 QPLAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIGSQ-------------RAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAHELVMDTMAAGTEGEGGVALSSAIVDHIAAACRLC 1333
+ + +F +DCR ++V G+ PTA+H DP A+ +P+ + E ++ P++ H+C++ G G++ A L Q+ S A D S VN LF KRGFP+VSVLEGGY A HEL++ + G G +S ++DH A C LC
Sbjct: 624 ESIRYFIIDCRASEEVHQGQVPTAFHFDPDAVTDPQVL-ETVLATLNPMKGTVHMCVMNHGYGYI-ADSL-----RQMMSASPSSYSDLPFFLRDEFLEAMARDISRVNAALLFLAKRGFPHVSVLEGGYGATHELLLQS------GHEGFCVSD-LIDHDAPQCTLC 777
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: B8C1V7_THAPS (Rhodanese domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1V7_THAPS) HSP 1 Score: 92.8 bits (229), Expect = 4.740e-15 Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 2
Query: 857 FRQRQPLAFFAVDCRPKQQV-DAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSG--------DGHLRARGLAGGNGHQVGGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAH 1231
F L F+ +DCRP+ + GRFPTA ++ P +++P+E+ +K++ +FE LR H+C++G G D L A ++ +D S + CALFF+K+GFP+VSVL GG+AAAH
Sbjct: 1031 FASESALKFYLIDCRPESIAKEQGRFPTAVNMSPQKLQDPDEV-QKLLDMFEALRGAVHICIMGEGFASFPALYDHPLTAE---------------EEKLLDEDVSRTSNCALFFLKKGFPFVSVLRGGFAAAH 1148
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: A0A1E7EUG7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUG7_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.440e-14 Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 2
Query: 863 QRQPLAFFAVDCRPKQQV-DAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAH 1231
+R PL F+ VD RP+ + GRFPT+ L P +++ +M E+ + +FE LR H+C++G G L GH++ G+ R+D N CALFF+ RGFP+VS+LEGG+AAAH
Sbjct: 741 ERMPLKFYVVDSRPEAAAQEQGRFPTSLSLSPEKLDDINKMKEEEI-MFESLRGSVHICIMGEGYASLPRL-----YGHKMTNGLAE--FIREDDLRNNKCALFFLSRGFPFVSILEGGFAAAH 856
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: A0A7S4JML1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JML1_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.640e-13 Identity = 56/150 (37.33%), Postives = 85/150 (56.67%), Query Frame = 2
Query: 872 PLAFFAVDCRPKQQV-DAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDG---HLRARGLAGGNGHQVGGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAHELVMDTMAAGTEGEGGVALSSAIVDH 1309
PL F+ VD RP + + GRFPTA L P A+ +P+ + E++ VFE LR H+ ++G G HL H++ + A +D S + CALFF+K+GFP+VS+L GG+AAAH + A + G+++SS +VD+
Sbjct: 559 PLHFYLVDSRPDETAGEQGRFPTATILSPEALMDPDRIEEQV-EVFESLRGAVHIVIMGEGFSFFPHLYD--------HRIS--AKEKALAEEDDSRTSLCALFFIKKGFPFVSILNGGFAAAHAWL-----ARDGPKRGLSISSILVDY 692
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Match: A0A2D4BSB6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSB6_PYTIN) HSP 1 Score: 87.4 bits (215), Expect = 2.080e-13 Identity = 54/159 (33.96%), Postives = 79/159 (49.69%), Query Frame = 2
Query: 875 LAFFAVDCRPKQQVDAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIGSQ------RAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAHELVMDTMAAGTEGEGGVALSSAIVDHIAAACRLC 1333
+ FF +DCR ++ G+ PTA+H DP A+ +P + + ++ PL+ H+C++G G GHL G + A D S VN LF KRGFP+VSVL GGY A HE +M + G +++ ++DH A C LC
Sbjct: 1038 IRFFVIDCRATEETQHGQVPTAFHFDPDAVADPAVL-DTVLATLNPLKGTVHMCVMGHGYGHLADELRQHAAPTTTPGELPFYLQPDFLEAFARDISRVNAALLFLAKRGFPHVSVLNGGYVATHEELMLHV------NEGFSVAD-LIDHDAPRCSLC 1188 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1543.3807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1543.3807.1 >prot_E-fasciculatus_F_contig1543.3807.1 ID=prot_E-fasciculatus_F_contig1543.3807.1|Name=mRNA_E-fasciculatus_F_contig1543.3807.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=947bp MASLLVDGEESLEGEAEATVVGPALTLWCQEAEALDLATPESFRHHLALIback to top mRNA from alignment at E-fasciculatus_F_contig1543:8572..17582- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1543.3807.1 ID=mRNA_E-fasciculatus_F_contig1543.3807.1|Name=mRNA_E-fasciculatus_F_contig1543.3807.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=9011bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1543:8572..17582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1543:8572..17582- >mRNA_E-fasciculatus_F_contig1543.3807.1 ID=mRNA_E-fasciculatus_F_contig1543.3807.1|Name=mRNA_E-fasciculatus_F_contig1543.3807.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=5682bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1543:8572..17582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |