mRNA_E-fasciculatus_F_contig1543.3806.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1543.3806.1
Unique NamemRNA_E-fasciculatus_F_contig1543.3806.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1543.3806.1 vs. uniprot
Match: D7G670_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G670_ECTSI)

HSP 1 Score: 532 bits (1370), Expect = 3.030e-189
Identity = 289/318 (90.88%), Postives = 298/318 (93.71%), Query Frame = 1 
Query:    1 MMALESSVLGCGSDDWSVDSDYAFQDFADDVKHHQQQQARHEKSEQNLLQSPSPTRERSGVPNPATPCNTRVVGSLDDNSSAETTKLHEHPEAAEAARADTMTAGGAQXXXXXXXVIPEEGEVGGSREGSASESGKDNPHHPILSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTAAGGWVPXXXXXXXXXXSNLRDQRGGYVNGGAVSAGKAGEGARFHFQQHDPAFYANRPRILKLGTLRKATERSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVLGKRAETCQFSWMAQVGNNSV 954
            M+ALESSVLGCGSDDWSVDSDYAFQDFADDVKHHQQQQARHEKSEQNLLQS SPTRERS VPNP TP N RVVGSLDDNS AETT+LHEHPEAAE ARADT+TAGGAQ XXXXXX  PEEGEVGGSR GSASE+GKDN HHP+LSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTA GGWV XXXXXXXXXXSNLRD+RGGYVNGGAVSAGKAGEGARFHFQQH+P FYANRPRILK GTLRKAT RSVGRLEKTTWKTKYVELTPGSFAYSDNGPIV+GKRAET QFSWM +V NNSV
Sbjct:    1 MIALESSVLGCGSDDWSVDSDYAFQDFADDVKHHQQQQARHEKSEQNLLQSSSPTRERSAVPNPGTPINKRVVGSLDDNSRAETTELHEHPEAAEGARADTLTAGGAQAXXXXXXXXPEEGEVGGSRRGSASEAGKDNRHHPVLSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTAGGGWVXXXXXXXXXXXSNLRDRRGGYVNGGAVSAGKAGEGARFHFQQHEPNFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGKRAETWQFSWMTRVRNNSV 318
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BLAST of mRNA_E-fasciculatus_F_contig1543.3806.1 vs. uniprot
Match: A0A6H5KYB1_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB1_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.140e-72
Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 1 
Query:  505 MFLKAAFQLLEERDRLFPASIGSWGTAAGGWVPXXXXXXXXXXSNLRDQRGGYVNGGAVSAGKAGEGARFHFQQHDPAFYANRPRILKLGTLRKATERSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVLGK 900
            MFLKAAFQLLEERDRLFPASIGSWGTAAGGWVPXXXXXXXXXXSNLRDQRGGYVNG AVSAGKAGEG RFHFQQH+P FYANRPRILK GTLRKAT RSVGRLEKTTWKTKYVELTPGSFAYSDNGPIV+GK
Sbjct:    1 MFLKAAFQLLEERDRLFPASIGSWGTAAGGWVPXXXXXXXXXXSNLRDQRGGYVNGAAVSAGKAGEGPRFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGK 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1543.3806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G670_ECTSI3.030e-18990.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYB1_9PHAE1.140e-7294.70PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1543contigE-fasciculatus_F_contig1543:4851..6933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009690.1
Exons3
Model size960
Cds size960
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1543.3806.1prot_E-fasciculatus_F_contig1543.3806.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1543 4851..6933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928021.301331-CDS-E-fasciculatus_F_contig1543:4850..49081622928021.301331-CDS-E-fasciculatus_F_contig1543:4850..4908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1543 4851..4908 -
1695995791.7438767-CDS-E-fasciculatus_F_contig1543:4850..49081695995791.7438767-CDS-E-fasciculatus_F_contig1543:4850..4908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1543 4851..4908 -
1622928021.314701-CDS-E-fasciculatus_F_contig1543:5602..59881622928021.314701-CDS-E-fasciculatus_F_contig1543:5602..5988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1543 5603..5988 -
1695995791.7548742-CDS-E-fasciculatus_F_contig1543:5602..59881695995791.7548742-CDS-E-fasciculatus_F_contig1543:5602..5988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1543 5603..5988 -
1622928021.32849-CDS-E-fasciculatus_F_contig1543:6417..69331622928021.32849-CDS-E-fasciculatus_F_contig1543:6417..6933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1543 6418..6933 -
1695995791.7660887-CDS-E-fasciculatus_F_contig1543:6417..69331695995791.7660887-CDS-E-fasciculatus_F_contig1543:6417..6933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1543 6418..6933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1543.3806.1

>prot_E-fasciculatus_F_contig1543.3806.1 ID=prot_E-fasciculatus_F_contig1543.3806.1|Name=mRNA_E-fasciculatus_F_contig1543.3806.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=320bp
MMALESSVLGCGSDDWSVDSDYAFQDFADDVKHHQQQQARHEKSEQNLLQ
SPSPTRERSGVPNPATPCNTRVVGSLDDNSSAETTKLHEHPEAAEAARAD
TMTAGGAQAAGGGGGVIPEEGEVGGSREGSASESGKDNPHHPILSNTRLF
GDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTAAGGWV
PPSGGGGGGGGSNLRDQRGGYVNGGAVSAGKAGEGARFHFQQHDPAFYAN
RPRILKLGTLRKATERSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVLGK
RAETCQFSWMAQVGNNSVA*
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mRNA from alignment at E-fasciculatus_F_contig1543:4851..6933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1543.3806.1 ID=mRNA_E-fasciculatus_F_contig1543.3806.1|Name=mRNA_E-fasciculatus_F_contig1543.3806.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2083bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1543:4851..6933- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGCGCTTGAGAGCTCCGTTCTCGGTTGCGGCAGCGATGACTGGTC
GGTGGACAGCGACTACGCCTTCCAAGACTTCGCCGACGACGTCAAGCATC
ACCAACAACAACAAGCACGGCACGAAAAGAGCGAACAAAATCTTCTTCAG
TCCCCATCACCGACTCGTGAGCGAAGCGGTGTGCCAAATCCAGCAACACC
GTGCAACACGCGTGTCGTGGGCAGCTTGGACGACAACTCAAGCGCCGAAA
CAACAAAACTTCACGAGCACCCGGAGGCAGCAGAAGCAGCTCGGGCAGAC
ACGATGACAGCAGGAGGGGCGCAGGCTGCTGGAGGCGGAGGGGGGGTAAT
ACCTGAAGAGGGGGAGGTGGGCGGAAGCAGAGAAGGTTCAGCTTCGGAAT
CCGGCAAGGATAATCCGCACCACCCAATACTGTCTAATACCAGGCTTTTC
GGGGATCCTGGTAGCAGTTCTGACAGCACGCACATTCTGAGGCTCGAGCA
ACGTATGTTTCTCAAGGTGGGTTGTGGTTGGGTTTACTTGACGGGTGCCG
TCATGTTGAGGAATACTCCGCGCAACAATCTGAGGTGGTCTCCTACAGTA
CATTAAACATGCGAATGTGTTCGTGATCGTTGAAAACTTAAAAATTTCCT
TGGTGGCGCCGGGGGACTGTCGATTACACCTCTCACATTTAAGGGACGGG
CCGGTGTGGAGAAAGACAGGTCCAAACGATACACACTGGTCGTTGTATTC
AGAAGGAAATTCGTCAAAACGGTGCGCTTGGCATTCATTGACCATGCGGA
CAATTCTGCAAGAAGAGCATTGCACACCAGCTACTTGCAAGCTATGTAAG
TCACACCCCCAGCAATTTCGTGTATGCGACCCTTCCTGAACCTAGCGACA
GAAAACGCACCGCCCCCGAACCATACCGCGTGCGCACGAAAACAGGCCGC
GTTTCAGTTGCTGGAGGAGCGAGATCGCCTCTTCCCGGCGTCGATCGGCT
CCTGGGGCACCGCCGCCGGGGGGTGGGTGCCTCCAAGCGGCGGTGGTGGC
GGCGGCGGGGGCAGCAACCTTCGCGACCAGCGAGGCGGGTACGTTAACGG
CGGGGCCGTTTCCGCTGGAAAGGCTGGAGAGGGCGCTCGCTTTCATTTCC
AGCAGCACGATCCTGCCTTCTACGCGAACAGGCCGAGGATTCTCAAGTTG
GGGACCCTGCGAAAGGCCACGGAGAGGAGCGTTGGGCGCCTCGAGAAAAC
CACGTGGAAAACCAAGTACGTCGAGCTCACGCCCGGGAGCTTCGCGTACT
CCGACAACGGACCCATCGTGCTCGGGAAGAGGTACGTGGTTGCGTGCGTC
GAAGGCCACATGCAGGACCTGAGCCAAGATCCACGAACGTTTCGTGTTCC
GAACCATCGTGCTTTCGCGCTAAACGTTTCGCAAAGGCCGCTAAGTGTGC
CAAGTCTACCAACGTTCGAGATCAAGTGCATGTGAACATTCGTGTTAAGA
TGGTCGTGTACATGATAATACCTCCGCGTTCGACGTACCGAAGATCTCCG
AAGATCTCCAGGAGACTTATTCAAGGCGTCGGGGCCAATTTTTCCCAAAC
AACATCTTGGGCCAAGCACATGCTACACTGACATGGTGACGGCAAAACTA
CGTGTGTCAAGAAAAATGAACTCTGAACTATTATGAGTCCAACGGCTAAG
CACTATATGTGGATATGTGGAGAGCGGTGGTTAACAGGGAATATTGCGGG
TTCGTTTGAGCTCGTGAGACAATCACTAGGCTGTGAGAATGCTGCCGTTG
TCGATTGCGTGCACCGACAGCTACCAGTCAACCAGTTGTTGACTGAGACG
TGCCGGTCACCTGCCCTCCTCGGGGGCGGGGAGCCTAGCCAATGGTAAGT
TGGCATCACGTCCACTCTTCTCAGTGACGAGAGCAACTGGCACAACGTAG
ACACTGCAGTTGAACTTACAGGTTCCGCCGCATCCGATCGAGTTTTGCCT
ACATGTTTTTTTGGAACCGGGTAAGAGCTGAAACGTGTCAGTTTTCGTGG
ATGGCACAAGTAGGCAACAACTCCGTAGCCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1543:4851..6933-

>mRNA_E-fasciculatus_F_contig1543.3806.1 ID=mRNA_E-fasciculatus_F_contig1543.3806.1|Name=mRNA_E-fasciculatus_F_contig1543.3806.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1920bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1543:4851..6933- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGCGCTTGAGAGCTCCGTTCTCGGTTGCGGCAGCGATGACTGGTC
GGTGGACAGCGACTACGCCTTCCAAGACTTCGCCGACGACGTCAAGCATC
ACCAACAACAACAAGCACGGCACGAAAAGAGCGAACAAAATCTTCTTCAG
TCCCCATCACCGACTCGTGAGCGAAGCGGTGTGCCAAATCCAGCAACACC
GTGCAACACGCGTGTCGTGGGCAGCTTGGACGACAACTCAAGCGCCGAAA
CAACAAAACTTCACGAGCACCCGGAGGCAGCAGAAGCAGCTCGGGCAGAC
ACGATGACAGCAGGAGGGGCGCAGGCTGCTGGAGGCGGAGGGGGGGTAAT
ACCTGAAGAGGGGGAGGTGGGCGGAAGCAGAGAAGGTTCAGCTTCGGAAT
CCGGCAAGGATAATCCGCACCACCCAATACTGTCTAATACCAGGCTTTTC
GGGGATCCTGGTAGCAGTTCTGACAGCACGCACATTCTGAGGCTCGAGCA
ACGTATGTTTCTCAAGATGATGGCGCTTGAGAGCTCCGTTCTCGGTTGCG
GCAGCGATGACTGGTCGGTGGACAGCGACTACGCCTTCCAAGACTTCGCC
GACGACGTCAAGCATCACCAACAACAACAAGCACGGCACGAAAAGAGCGA
ACAAAATCTTCTTCAGTCCCCATCACCGACTCGTGAGCGAAGCGGTGTGC
CAAATCCAGCAACACCGTGCAACACGCGTGTCGTGGGCAGCTTGGACGAC
AACTCAAGCGCCGAAACAACAAAACTTCACGAGCACCCGGAGGCAGCAGA
AGCAGCTCGGGCAGACACGATGACAGCAGGAGGGGCGCAGGCTGCTGGAG
GCGGAGGGGGGGTAATACCTGAAGAGGGGGAGGTGGGCGGAAGCAGAGAA
GGTTCAGCTTCGGAATCCGGCAAGGATAATCCGCACCACCCAATACTGTC
TAATACCAGGCTTTTCGGGGATCCTGGTAGCAGTTCTGACAGCACGCACA
TTCTGAGGCTCGAGCAACGTATGTTTCTCAAGGCCGCGTTTCAGTTGCTG
GAGGAGCGAGATCGCCTCTTCCCGGCGTCGATCGGCTCCTGGGGCACCGC
CGCCGGGGGGTGGGTGCCTCCAAGCGGCGGTGGTGGCGGCGGCGGGGGCA
GCAACCTTCGCGACCAGCGAGGCGGGTACGTTAACGGCGGGGCCGTTTCC
GCTGGAAAGGCTGGAGAGGGCGCTCGCTTTCATTTCCAGCAGCACGATCC
TGCCTTCTACGCGAACAGGCCGAGGATTCTCAAGTTGGGGACCCTGCGAA
AGGCCACGGAGAGGAGCGTTGGGCGCCTCGAGAAAACCACGTGGAAAACC
AAGTACGTCGAGCTCACGCCCGGGAGCTTCGCGTACTCCGACAACGGACC
CATCGTGCTCGGGAAGAGGCCGCGTTTCAGTTGCTGGAGGAGCGAGATCG
CCTCTTCCCGGCGTCGATCGGCTCCTGGGGCACCGCCGCCGGGGGGTGGG
TGCCTCCAAGCGGCGGTGGTGGCGGCGGCGGGGGCAGCAACCTTCGCGAC
CAGCGAGGCGGGTACGTTAACGGCGGGGCCGTTTCCGCTGGAAAGGCTGG
AGAGGGCGCTCGCTTTCATTTCCAGCAGCACGATCCTGCCTTCTACGCGA
ACAGGCCGAGGATTCTCAAGTTGGGGACCCTGCGAAAGGCCACGGAGAGG
AGCGTTGGGCGCCTCGAGAAAACCACGTGGAAAACCAAGTACGTCGAGCT
CACGCCCGGGAGCTTCGCGTACTCCGACAACGGACCCATCGTGCTCGGGA
AGAGAGCTGAAACGTGTCAGTTTTCGTGGATGGCACAAGTAGGCAACAAC
TCCGTAGCCTAAAGCTGAAACGTGTCAGTTTTCGTGGATGGCACAAGTAG
GCAACAACTCCGTAGCCTAA
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