mRNA_E-fasciculatus_F_contig1543.3805.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: D7G7X5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X5_ECTSI) HSP 1 Score: 619 bits (1597), Expect = 4.220e-214 Identity = 328/350 (93.71%), Postives = 331/350 (94.57%), Query Frame = 1
Query: 1 SKHLLEIEVVGSKRRVWAAESKQECRRWVSAIKAAMTERPVNPDETVLGEDQLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGGGGGLQEGGEKNSSMGVPVKWVKQQLPGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGERGPEGIIGALTRCILAQAGRLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQVQAQGHKQSPSRQYRQTIDGGAKSLQAKSPPSPGELPEPPSPSSLGSGSAAASPSFGHRGSGVQRSPPSACNSERDCASPGGGGDGDSKAQ 1050
SKHLLEIEVVGSKRRVWAAESKQECRRWVSAIKAAMTERPVNPDET+LGEDQLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRG GGGLQEGGEK+SSMGVPVKWVKQQLPGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGERGPEGIIGALTRCILAQAGRLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQVQ QGHKQSPSR YR TIDGG K Q SPPSPGELPE SSLGSGSAAASPSFGHR SGVQRSPPSA NSE SPGGGGDGD+KAQ
Sbjct: 24 SKHLLEIEVVGSKRRVWAAESKQECRRWVSAIKAAMTERPVNPDETILGEDQLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGTGGGLQEGGEKDSSMGVPVKWVKQQLPGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGERGPEGIIGALTRCILAQAGRLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQVQTQGHKQSPSRHYRHTIDGGTKGPQPNSPPSPGELPEXXXXSSLGSGSAAASPSFGHRSSGVQRSPPSARNSEGGFTSPGGGGDGDTKAQ 373
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: A0A6H5KYY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY2_9PHAE) HSP 1 Score: 179 bits (454), Expect = 7.310e-47 Identity = 104/140 (74.29%), Postives = 109/140 (77.86%), Query Frame = 1
Query: 634 CDRTTSGGDTYLV-VDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQVQAQGHKQSPSRQYRQTIDGGAKSLQAKSPPSPGELPEPPSPSSLGSGSAAASPSFGHRGSGVQRSPPSACNSERDCASPGGGGDGDSKAQ 1050
C + G T + VDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQ Q QGHKQ+PSR YR TIDGG K QA SPPSPGELPE LGS SAAAS SF HR SGVQRSPPSA NSE + SPGGGGDGD+KAQ
Sbjct: 63 CSSSRCGKPTDAIQVDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQKQTQGHKQNPSRHYRHTIDGGTKGSQANSPPSPGELPEXXXXXXLGSASAAASRSFEHRSSGVQRSPPSARNSEGEFTSPGGGGDGDTKAQ 202
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: A0A7S4HSG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSG3_9STRA) HSP 1 Score: 144 bits (363), Expect = 5.850e-36 Identity = 95/227 (41.85%), Postives = 131/227 (57.71%), Query Frame = 1
Query: 166 IPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGGGGGL------------QEGGEKNS-----SMGVPVKWVKQQLPGSE-----RVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGE--RGPEGIIGALTRCILAQ----AGRLSASDSLSK---LSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITV 753
+P S +R +E YL+ + ++ A+S E Y+ AL LM G GGGG + + G S S+ VPV+W+K+Q+ + R ++ G G +AQLWKDM RD+V+ING ++ G+ GPE I+GALTR I++ A +A S + ++EAQS+ ARDVLLAC RT SGGD+Y VDNLC N LVVL P++ EAEPL I V
Sbjct: 3 VPSRSPYRADLEQYLAVQSAVKKASSREAYMRALSVLMLPGGAGGGGSVLPSPPSDLASQASDAGSAQSQPSGRSLNVPVQWIKEQVEVASGGDGVRAFREEGVSTG---IAQLWKDMSRDSVTINGELLKGDSPHGPECIVGALTRSIMSHDRSAAQNTAAPSSYRRKFAINEAQSVSYARDVLLACSRTRSGGDSYYCVDNLCSNSDLVVLCPSTAEAEPLKIEV 226
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: A0A6U3S3W6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S3W6_9STRA) HSP 1 Score: 142 bits (359), Expect = 3.790e-34 Identity = 97/264 (36.74%), Postives = 142/264 (53.79%), Query Frame = 1
Query: 40 RRVWAAESKQECRRWVSAIKAAMTERPVNPDETVLGEDQLP---------------IIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGGGGGLQEGGEKNSSMGVPVKWVKQQ---LPGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGE--RGPEGIIGALTRCILAQAGRLSASDSLS------KLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITV 753
+R+W SK++ + W+ AI AM V + L P I+P +S ++ ++E YL + ++NATS E+Y+ L L+ V + VPV+W+K+ L S+ +A + ++QLWKDM RD+VSING + G+ GPE IIG LTRCI+ + R+S + S +++E+ +L ARDVLL+C+RT SGGD+Y VD LC NP LVVL P+S AEPL +TV
Sbjct: 129 KRLWMTSSKEDRQSWIHAIHEAMIGGSVTRGDNFLDYQIEPKKRTIMKKHDGGGDSIVPPNSPYKQNLEEYLRVQKGVKNATSKEEYVGMLS-LLCGV----------------PLNVPVQWIKEHVETLSSSQNASKAFEEDSVSNGISQLWKDMLRDSVSINGDLFAGDSGHGPEQIIGELTRCIM-KFDRMSLRNVDSNVMKKFRITESMALSYARDVLLSCNRTRSGGDSYYCVDTLCSNPDLVVLCPSSTVAEPLTVTV 374
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: B8C5V8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5V8_THAPS) HSP 1 Score: 135 bits (341), Expect = 1.190e-31 Identity = 94/257 (36.58%), Postives = 135/257 (52.53%), Query Frame = 1
Query: 16 EIEVVGSKRRVWAAESKQECRRWVSAIKAAMTERPVNPDETVL-------GEDQLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGGGGGLQEGGEKNSSMGVPVKWVKQQLPGSE-RVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGE--RGPEGIIGALTRCILAQAGRLSASDSL-SKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITV 753
E+ V G RR+W A + E + W+ AI AM V + L G+ + +P +S + +E YL R + A S +DYL AL L + S+ +P++W+K QL S +Q + G + QLWKD+ RD+V ING+V++GE GP+ IIG LT+ I+ S D S ++E Q++ ARD++LA DRT SGGD+Y ++NLC N LVV+ P S A PL ITV
Sbjct: 233 ELSVKGGPRRIWVANTPGERQGWIQAIHDAMIGASVVRGDNFLDYQMEHDGKTKRWTLPKNSPYSAFIEQYLQVREAINGAESKQDYLKALSIL-----------------RGKSIMIPIQWLKTQLDDSTPTAFQEADMSSG---VDQLWKDLLRDSVEINGQVISGESFHGPDRIIGNLTQLIIHHNQYNSCHDGKQSSITEVQAVSYARDIMLATDRTRSGGDSYYCIENLCLNRDLVVICPTSTVAAPLSITV 469
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: A0A7S2U7T9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7T9_9STRA) HSP 1 Score: 134 bits (337), Expect = 3.690e-31 Identity = 95/268 (35.45%), Postives = 141/268 (52.61%), Query Frame = 1
Query: 10 LLEIEVVGSKRRVWAAESKQECRRWVSAIKAAMTERPVNPDETVL----------GEDQLP--IIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGGGGGLQEGGEKNSSMGVPVKWVKQQLPGSERVYQASGRGRGKSE---LAQLWKDMKRDTVSINGRVMTGE--RGPEGIIGALTRCILAQAGRLSASDSLS---KLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITV 753
+ E+ V GS RR+W A SK+E W+ A++ AM + V E+ L G+ + P IP S ++ + YL + ++ A S YL +LK + + VPV+W+++ + S + R + + QLWKDM RD+VSING++ G+ GPE I+GAL RCI+ + R + + +++EAQ+L ARDVLLAC+RT SGGD+Y D LC N LV L P+S EA+P+ I V
Sbjct: 97 IFELTVSGS-RRLWMANSKKEREAWIHAVRDAMVGKSVVRGESSLDYEYESEAKKGKSRRPGSSIPAQSPFKNDLIHYLKVQTKIKTARSKTHYLGSLKRCVGVP-----------------LNVPVQWIREHVESSSSSITGAEAFREEDVSVGMKQLWKDMLRDSVSINGKIYKGDDPHGPERIMGALARCIM-RVDRSTEQAHIGDKHRITEAQALSYARDVLLACNRTRSGGDSYYCFDTLCNNSHLVALCPSSTEADPMKIVV 345
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: A0A1E7ETM5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETM5_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.620e-29 Identity = 90/256 (35.16%), Postives = 136/256 (53.12%), Query Frame = 1
Query: 28 VGSKRRVWAAESKQECRRWVSAIKAAMTERPVNPD-ETVLGEDQLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGGGGGLQEGGEKNSSMGVPVKWVKQQLPGS------ERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGE--RGPEGIIGALTRCILAQAGRLSASDSLS---KLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITVTL 759
VG R+W A +K E ++W+ AI AM R +N D + V G + S ++ ++ YL + L+N+ S ++Y+ L L + +PV+W+ +QL + A S + QLW+D++RDT+ IN + G+ GPE IIGALTR I+A +S SDS + E++++ ARD+LL+ +RT SGGD+Y +D L N LVV+VP+SQ+AEPL ITV L
Sbjct: 190 VGKFGRLWLARTKAERKKWLEAINDAMIGRSINQDSDNVHGRSGN--VNSRSPYKDDLKLYLKIKANLKNSKSKKEYIDGLINLSGR----------------DPLNIPVRWIMEQLENKNNGRTEDNTVGAFVETSINSSVEQLWRDLRRDTIRINKELFLGDSGHGPEKIIGALTRDIVA----VSRSDSKYYRYAIPESKAVAYARDILLSINRTRSGGDSYFCIDTLTSNSDLVVIVPSSQQAEPLSITVEL 423
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: A0A7S1VEQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VEQ9_9STRA) HSP 1 Score: 128 bits (322), Expect = 4.780e-29 Identity = 99/277 (35.74%), Postives = 144/277 (51.99%), Query Frame = 1
Query: 10 LLEIEVVGSKRRVWAAESKQECRRWVSAIKAAMTERPV--NPDETVLG-------EDQLP-IIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGGGGGLQEGGEKNSSMGVPVKWVKQQ--LPGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGERG--PEGIIGALT-------RCILAQAGRLSASDSLS-------KLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITVT 756
+ E+ V G RR W A S+ E + W+ AI+ AM + DE G + P + S + +E YL + +R AT + Y+SAL + ++G G +S+ VPV W++Q +++++ G S + QLWKD+ RDTV +NG + G G PE IIGALT R I+ Q+GR+ ++ S ++SE Q+L ARD+LLA +RT SGGD+Y VD LCRN LVV P S EAEPL + ++
Sbjct: 432 IFELTVEGGPRRFWMANSRDERQAWIRAIQDAMMGKSAVSRGDEDHGGGAGAVGHNGRRPNTVNAKSPFKKDLEKYLRIQKDIRGATDKDTYVSAL---ITKMGVG------------TSLKVPVIWIEQNSMFEDPDKIFKEEGVS---SSVDQLWKDLFRDTVRVNGELFQGGSGHAPERIIGALTKEILSYDRSIMQQSGRVGFVNTASPNKRRKNEISEVQALAYARDILLAGNRTRSGGDSYYCVDALCRNADLVVATPRSAEAEPLQVKIS 690
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: K0TJJ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJJ1_THAOC) HSP 1 Score: 124 bits (312), Expect = 2.980e-28 Identity = 91/253 (35.97%), Postives = 132/253 (52.17%), Query Frame = 1
Query: 10 LLEIEVVGSKRRVWAAESKQECRRWVSAIKAAMTERPVNPDETVLGEDQLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGGGGGLQEGGEKNSSMGVPVKWVKQQL-----PGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGERGPEGIIGALTRCILAQAGRLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITV 753
+ E+ V G +R+W A S+++ WV AI+ AM P V G +P S + + R +A S E+YL A++ LM ++ S+ VPV +VK PG + +LAQ+WKD++RD V +NGRV++GE PE I+G+L IL+ R +D ++E+Q++ ARDVLLACDRT S GD+YL +NLC N +VVL PAS A+P+ I V
Sbjct: 137 VFELRVKGGGKRLWMATSREDRAAWVEAIRRAMAGP---PSAVVDGYSPAKRLPDSSPY----SMFAVIRDATSSARSKEEYLQAIE-LM----------------RDKSLQVPVNFVKVNYAALGSPGDHAQTDVT------EDLAQMWKDLRRDFVDVNGRVLSGEPFPEPIMGSLALEILS---RYHGND----VTESQAVSCARDVLLACDRTKSSGDSYLCAENLCLNRDMVVLCPASTGAKPISIRV 352
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Match: A0A7S1FMB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMB8_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.440e-26 Identity = 89/249 (35.74%), Postives = 128/249 (51.41%), Query Frame = 1
Query: 1 SKHLLEIEVVGSKRRVWAAESKQECRRWVSAIKAAMTERPVNPDETVLGED-QLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGGGGGLQEGGEKNSSMGVPVKWVKQQLPGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGER-GPEGIIGALTRCILAQAGRLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPL 741
S H E+ V G +RVW A SK E W+ AI M V V + ++P S ++ +E + + +R A +YL GL N S+ +PV W+++Q+ S+ +Q G + ++QLWKD+KRDTVSING V+ G+ GPE I G+LT IL + + +SE Q++ ARD+LLA +RT SGGD Y VD LCR+ +V + P S +AEPL
Sbjct: 511 SGHAFEL-VDGGSKRVWLAGSKDERDSWIRAIHECMVGGSVLTGTYVHQRRYKKNMVPLSSPYKKDIEQFTQRQTAVREAKIRSEYLDVFSGLW-----------------NYSLSIPVFWIRKQM-NSDVAFQEEGI----ASISQLWKDLKRDTVSINGHVIRGDTDGPERIFGSLTTAIL-HCNVKNEQSNKPGISEVQAISFARDILLAGNRTRSGGDAYYCVDLLCRSD-IVAICPHSNDAEPL 734 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1543.3805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1543.3805.1 >prot_E-fasciculatus_F_contig1543.3805.1 ID=prot_E-fasciculatus_F_contig1543.3805.1|Name=mRNA_E-fasciculatus_F_contig1543.3805.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=350bp SKHLLEIEVVGSKRRVWAAESKQECRRWVSAIKAAMTERPVNPDETVLGEback to top mRNA from alignment at E-fasciculatus_F_contig1543:2..4482- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1543.3805.1 ID=mRNA_E-fasciculatus_F_contig1543.3805.1|Name=mRNA_E-fasciculatus_F_contig1543.3805.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4481bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1543:2..4482- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1543:2..4482- >mRNA_E-fasciculatus_F_contig1543.3805.1 ID=mRNA_E-fasciculatus_F_contig1543.3805.1|Name=mRNA_E-fasciculatus_F_contig1543.3805.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2100bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1543:2..4482- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |