mRNA_E-fasciculatus_F_contig15429.3804.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15429.3804.1
Unique NamemRNA_E-fasciculatus_F_contig15429.3804.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: A0A6H5KJM3_9PHAE (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 7.130e-35
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQDRL 201
            KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSM HCEIMVRDVEESKRVNANVQDRL
Sbjct:  152 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMRHCEIMVRDVEESKRVNANVQDRL 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: D8LNH8_ECTSI (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH8_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.840e-29
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:   31 MLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQDRL 201
            MLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRD+EESKRVNANVQDRL
Sbjct:    1 MLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDLEESKRVNANVQDRL 57
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BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: A0A225VZU6_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VZU6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.720e-23
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQDRL 201
            +ELFV EYR+MLADKL+ NL +DTD +VQ LELLKLRFGE S+H CEIMVRD+E+SKR+N NVQ  +
Sbjct:  444 RELFVNEYRMMLADKLLQNLEFDTDLDVQTLELLKLRFGEDSLHQCEIMVRDIEDSKRLNLNVQSTM 510
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BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: A0A7R9ZKL6_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKL6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.140e-23
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQD 195
            KELFV EYRLMLADKL+ N  Y+TD EV  LELLKLRFGE SM +CEIM++D+++SKR+NAN++D
Sbjct:   17 KELFVDEYRLMLADKLLANTDYNTDSEVHTLELLKLRFGEVSMRNCEIMIKDMDDSKRINANIKD 81
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BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: A0A833WHR5_PHYIN (Anaphase-promoting complex subunit 2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WHR5_PHYIN)

HSP 1 Score: 100 bits (249), Expect = 3.710e-23
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQDRL 201
            +ELFV EYR+MLADKL+ NL +DTD++VQ LELLKLRFGE S+  CEIMVRD+E+SKR+N NVQ  L
Sbjct:  449 RELFVNEYRMMLADKLLQNLEFDTDRDVQTLELLKLRFGEDSLQQCEIMVRDIEDSKRLNGNVQSTL 515
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: A0A662YHA6_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHA6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.050e-23
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQDRL 201
            +ELFV EYR+MLADKL+ NL YDTD++VQ LELLKLRFGE S+  CEIMVRD+E+SKR+N NV+  L
Sbjct:  342 RELFVNEYRMMLADKLLQNLEYDTDRDVQTLELLKLRFGEESLQQCEIMVRDIEDSKRLNLNVRSTL 408
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BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: B8C5R7_THAPS (Anaphase-promoting complex subunit 2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5R7_THAPS)

HSP 1 Score: 100 bits (248), Expect = 5.070e-23
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQDRL 201
            KELFV EYR+MLADKL+ NL YDTDK+V NLELLKLRFGE SM  CE+M++D+++SKR++ N++  L
Sbjct:  444 KELFVNEYRIMLADKLLSNLEYDTDKDVHNLELLKLRFGEASMRQCEVMIKDIDDSKRIHNNIRSTL 510
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BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: A0A7S4RA98_9STRA (Anaphase-promoting complex subunit 2 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RA98_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 9.450e-23
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQDRL 201
            KELFV EYR+MLADKL+ NL YDTDKEV NLELLKLRFGE SM  CEIM++D+++SKR+ +N+   +
Sbjct:  424 KELFVNEYRVMLADKLLANLGYDTDKEVHNLELLKLRFGEISMRQCEIMIKDIDDSKRIISNIHSTI 490
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: A0A2P4YMB7_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YMB7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 9.450e-23
Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQDRL 201
            +ELFV EYR+MLADKL+ NL +DTD++VQ LELLKLRFGE S+  CEIMVRD+E+SKR+N NVQ  +
Sbjct:  449 RELFVNEYRMMLADKLLQNLEFDTDRDVQTLELLKLRFGEDSLQQCEIMVRDIEDSKRLNLNVQSTM 515
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Match: K3X5T3_GLOUD (Anaphase-promoting complex subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5T3_GLOUD)

HSP 1 Score: 99.0 bits (245), Expect = 1.290e-22
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 KELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVNANVQ 192
            +ELFV EYR+MLADKL+ NL Y+TD++VQ LELLKLRFGE S+  CEIMVRD+E+SKR+N N+Q
Sbjct:  463 RELFVNEYRMMLADKLLQNLEYNTDRDVQTLELLKLRFGEESLQQCEIMVRDIEDSKRINLNIQ 526
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15429.3804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJM3_9PHAE7.130e-3598.51Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
D8LNH8_ECTSI1.840e-2998.25Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
A0A225VZU6_9STRA2.720e-2370.15Anaphase-promoting complex subunit 2 n=1 Tax=Phyto... [more]
A0A7R9ZKL6_9STRA3.140e-2369.23Anaphase-promoting complex subunit 2 n=1 Tax=Crasp... [more]
A0A833WHR5_PHYIN3.710e-2370.15Anaphase-promoting complex subunit 2 n=2 Tax=Phyto... [more]
A0A662YHA6_9STRA5.050e-2370.15Anaphase-promoting complex subunit 2 n=1 Tax=Notho... [more]
B8C5R7_THAPS5.070e-2365.67Anaphase-promoting complex subunit 2 n=1 Tax=Thala... [more]
A0A7S4RA98_9STRA9.450e-2367.16Anaphase-promoting complex subunit 2 n=2 Tax=Dityl... [more]
A0A2P4YMB7_9STRA9.450e-2368.66Anaphase-promoting complex subunit 2 n=1 Tax=Phyto... [more]
K3X5T3_GLOUD1.290e-2270.31Anaphase-promoting complex subunit 2 n=1 Tax=Globi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15429contigE-fasciculatus_F_contig15429:1658..2338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue7.9e-24
Seed eggNOG ortholog2880.D8LNH8
Preferred nameAPC2
KEGG koko:K03349
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0000151,GO:0000152,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009553,GO:0009561,GO:0009987,GO:0010498,GO:0015630,GO:0016567,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031145,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0051603,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsKOG2165@1,KOG2165@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size201
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15429.3804.1prot_E-fasciculatus_F_contig15429.3804.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15429 1658..2308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.9104362-CDS-E-fasciculatus_F_contig15429:1657..17111622928020.9104362-CDS-E-fasciculatus_F_contig15429:1657..1711Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15429 1658..1711 -
1695995791.651863-CDS-E-fasciculatus_F_contig15429:1657..17111695995791.651863-CDS-E-fasciculatus_F_contig15429:1657..1711Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15429 1658..1711 -
1622928020.9239676-CDS-E-fasciculatus_F_contig15429:2191..23081622928020.9239676-CDS-E-fasciculatus_F_contig15429:2191..2308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15429 2192..2308 -
1695995791.6629515-CDS-E-fasciculatus_F_contig15429:2191..23081695995791.6629515-CDS-E-fasciculatus_F_contig15429:2191..2308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15429 2192..2308 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.9397285-UTR-E-fasciculatus_F_contig15429:2308..23381622928020.9397285-UTR-E-fasciculatus_F_contig15429:2308..2338Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15429 2309..2338 -
1695995791.6712866-UTR-E-fasciculatus_F_contig15429:2308..23381695995791.6712866-UTR-E-fasciculatus_F_contig15429:2308..2338Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15429 2309..2338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15429.3804.1

>prot_E-fasciculatus_F_contig15429.3804.1 ID=prot_E-fasciculatus_F_contig15429.3804.1|Name=mRNA_E-fasciculatus_F_contig15429.3804.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=57bp
MLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDVEESKRVN
ANVQDRL
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mRNA from alignment at E-fasciculatus_F_contig15429:1658..2338-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15429.3804.1 ID=mRNA_E-fasciculatus_F_contig15429.3804.1|Name=mRNA_E-fasciculatus_F_contig15429.3804.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=681bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15429:1658..2338- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGAGCTCTTCGTAACCGAGTACCGGCTGATGCTGGCCGACAAGCTGGT
CGGCAACCTGTCGTACGACACGGACAAGGAGGTTCAGAACCTCGAGCTGC
TCAAGTTACGCTTCGGGGAGACCAGCATGCACCACTGCGAGATCATGGTG
AGGTGCTGGTGGTGGCTCCCGTGCTGCTGTAGTCGTTGTGGTCACCGGGT
GCTGTTTGTTGTTGATAGCGGTGTGTGTGTGTGGTGGTGGTGATGATCGT
CGTCGTCAATGGGGTGTTTTGTGTTTTGTTGTCGATGGCGGTGGGTTGGG
GTGTCGATGGTGGTTGTGTTCGGGAGGTCTGGTGTTGGTTGCGGCGGTGG
CGGAGGCGGCGTTGTGTTTCCTTCCTTCGAGTGTTGGTGTGACGAAAGTT
GTGGCGGTGGTGCTGCTGGTGGTGATGCTGGTGGTGGGGGCGGTGCTGCT
GCGCTTGCGCACTTTATGCTGGTCATGAACTGATGCCGTCTCCAGATGCC
GTTTTTTTCTCCAGCCGAACCACACGGCACCAGCAGTTAGTTGATGGAAA
TAACGTGATTCTTTTTCGCATTTGTGTACCTTGATCCTCACCGCTTCTCT
TTTGTCCACCTCTCTGCCGAACGCAAGGTGCGGGACGTTGAAGAATCGAA
GCGAGTTAACGCCAACGTGCAGGACCGACTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15429:1658..2338-

>mRNA_E-fasciculatus_F_contig15429.3804.1 ID=mRNA_E-fasciculatus_F_contig15429.3804.1|Name=mRNA_E-fasciculatus_F_contig15429.3804.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15429:1658..2338- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGGCCGACAAGCTGGTCGGCAACCTGTCGTACGACACGGACAAGGA
GGTTCAGAACCTCGAGCTGCTCAAGTTACGCTTCGGGGAGACCAGCATGC
ACCACTGCGAGATCATGATGCTGGCCGACAAGCTGGTCGGCAACCTGTCG
TACGACACGGACAAGGAGGTTCAGAACCTCGAGCTGCTCAAGTTACGCTT
CGGGGAGACCAGCATGCACCACTGCGAGATCATGGTGCGGGACGTTGAAG
AATCGAAGCGAGTTAACGCCAACGTGCAGGACCGACTTGTGCGGGACGTT
GAAGAATCGAAGCGAGTTAACGCCAACGTGCAGGACCGACTT
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