mRNA_E-fasciculatus_F_contig15422.3801.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15422.3801.1
Unique NamemRNA_E-fasciculatus_F_contig15422.3801.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15422.3801.1 vs. uniprot
Match: D8LK62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK62_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.620e-16
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 3 
Query:  141 MARLYGLSTVQHPRRCAIVLGCLRSPAGVRAGERGVARGCGGGGAYLELPP 293
            MARL+GL TVQ PRR A  + CLRSPAG RAGERG ARGC GGG YL LPP
Sbjct:   45 MARLHGLFTVQRPRRMATFVACLRSPAGARAGERGGARGCDGGGPYLGLPP 95
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15422.3801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK62_ECTSI1.620e-1674.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15422contigE-fasciculatus_F_contig15422:2230..2831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15422.3801.1prot_E-fasciculatus_F_contig15422.3801.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15422 2295..2831 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.6658957-UTR-E-fasciculatus_F_contig15422:2229..22941622928020.6658957-UTR-E-fasciculatus_F_contig15422:2229..2294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15422 2230..2294 -
1695995791.5734239-UTR-E-fasciculatus_F_contig15422:2229..22941695995791.5734239-UTR-E-fasciculatus_F_contig15422:2229..2294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15422 2230..2294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.6876132-CDS-E-fasciculatus_F_contig15422:2294..23491622928020.6876132-CDS-E-fasciculatus_F_contig15422:2294..2349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15422 2295..2349 -
1695995791.5827093-CDS-E-fasciculatus_F_contig15422:2294..23491695995791.5827093-CDS-E-fasciculatus_F_contig15422:2294..2349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15422 2295..2349 -
1622928020.6987054-CDS-E-fasciculatus_F_contig15422:2658..28311622928020.6987054-CDS-E-fasciculatus_F_contig15422:2658..2831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15422 2659..2831 -
1695995791.591873-CDS-E-fasciculatus_F_contig15422:2658..28311695995791.591873-CDS-E-fasciculatus_F_contig15422:2658..2831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15422 2659..2831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15422.3801.1

>prot_E-fasciculatus_F_contig15422.3801.1 ID=prot_E-fasciculatus_F_contig15422.3801.1|Name=mRNA_E-fasciculatus_F_contig15422.3801.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
MGVAEGGEHLQAIAHDEYHQLWGGHGPLRYHRRSVFFGYFFPTPARAWRA
CMGSPLFSTRGDARLSWGVSVHRRG*
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mRNA from alignment at E-fasciculatus_F_contig15422:2230..2831-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15422.3801.1 ID=mRNA_E-fasciculatus_F_contig15422.3801.1|Name=mRNA_E-fasciculatus_F_contig15422.3801.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=602bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15422:2230..2831- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGTGGCCGAGGGAGGCGAGCATCTGCAAGCCATCGCGCACGACGA
ATATCACCAGCTGTGGGGTGGCCACGGCCCGTTGCGATACCACCGTCGCA
GCGTCTTCTTCGGCTACTTCTTCCCGACTCCGGCACGCGCATGGCGCGCC
TGTATGGGCTCTCCACTGTTCAGGTCGGTCAATTGTCTGTATTTTCTGGC
ACCTCCGTTGCTGTGTATGTCGAGTGATTTTGGTGCGAGGGTGGTGCACG
GGTCGGTCGTTTTGTAGGGGGAGTTGCACGCCTTACAAAATGCATTATGT
TTCCCGTCCCGTCCCGTTCCCTACCCTCTTCTCCCTGAACCTACATCAAC
TGGCCCGCTCTGGCGCCTGTTTCGCTTAGCTTGATATCCGATGATGTGTG
TGACAGGCTGATGTGTGTGACAGGCGTCCGAAGCATTGATCGTTGCCTAC
TCGTGTTGCCGCTGCTCATTTTTGCTCTACAGCACCCGAGGCGATGCGCG
ATTGTCTTGGGGTGTCTCCGTTCACCGGCGGGGGTGAGAGCCGGCGAGCG
AGGGGTGGCTCGAGGTTGCGGTGGTGGTGGCGCATACCTCGAGCTTCCAC
CC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15422:2230..2831-

>mRNA_E-fasciculatus_F_contig15422.3801.1 ID=mRNA_E-fasciculatus_F_contig15422.3801.1|Name=mRNA_E-fasciculatus_F_contig15422.3801.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15422:2230..2831- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGTGGCCGAGGGAGGCGAGCATCTGCAAGCCATCGCGCACGACGA
ATATCACCAGCTGTGGGGTGGCCACGGCCCGTTGCGATACCACCGTCGCA
GCGTCTTCTTCGGCTACTTCTTCCCGACTCCGGCACGCGCATGGCGCGCC
TGTATGGGCTCTCCACTGTTCAGATGGGCGTGGCCGAGGGAGGCGAGCAT
CTGCAAGCCATCGCGCACGACGAATATCACCAGCTGTGGGGTGGCCACGG
CCCGTTGCGATACCACCGTCGCAGCGTCTTCTTCGGCTACTTCTTCCCGA
CTCCGGCACGCGCATGGCGCGCCTGTATGGGCTCTCCACTGTTCAGCACC
CGAGGCGATGCGCGATTGTCTTGGGGTGTCTCCGTTCACCGGCGGGGGTG
ACACCCGAGGCGATGCGCGATTGTCTTGGGGTGTCTCCGTTCACCGGCGG
GGGTGA
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