mRNA_E-fasciculatus_F_contig15421.3799.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15421.3799.1
Unique NamemRNA_E-fasciculatus_F_contig15421.3799.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15421.3799.1 vs. uniprot
Match: D7FGR5_ECTSI (Transcription factor prr1 (Pombe response regulator 1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR5_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 2.160e-105
Identity = 179/236 (75.85%), Postives = 184/236 (77.97%), Query Frame = 1 
Query:    4 KTQVPHYDMHGVNEIHGQHFRHHPPGVKNKENSEQAKMVPAHMTANRHSSPVTPELHGGAGYPTPHGVPGMMGNPPLPAAAXXXXXXXXGHMTPGTQAAMAMSNMSLSPMPHASNAWSPQQPGQGIDALTLTPAFGGSGVSTPLPDGGDAASGPAGGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGMRMAYWEKSRKRRTLSAQLVFPVQPPNNTETIDQPDPSLC 711
            K +VPHYDMHGVNEIHGQHFRHHPPGVKNKEN+E+AKMVPAHMTAN HSSPVTPELHGG GYPTPHGVPGMMGNP L A+A        GHMTPGTQAA AMSNMSLSPMPHASNAWSPQQPGQGIDALTLTPAF G GV     DGGDA SGP GG                    XXXXXXXX        R GMRMAYWEK+RKRRTLSAQLVFPVQPPNNTETIDQPDPSLC
Sbjct:   67 KGKVPHYDMHGVNEIHGQHFRHHPPGVKNKENAERAKMVPAHMTANPHSSPVTPELHGGVGYPTPHGVPGMMGNPALAASAPAAGG---GHMTPGTQAATAMSNMSLSPMPHASNAWSPQQPGQGIDALTLTPAFAGPGVG----DGGDAVSGPGGGGPAESLNEKHQGMGKLGSGGXXXXXXXXPSSGGGGERTGMRMAYWEKNRKRRTLSAQLVFPVQPPNNTETIDQPDPSLC 295
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BLAST of mRNA_E-fasciculatus_F_contig15421.3799.1 vs. uniprot
Match: A0A6H5JIP5_9PHAE (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP5_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.100e-68
Identity = 118/152 (77.63%), Postives = 125/152 (82.24%), Query Frame = 1 
Query:    4 KTQVPHYDMHGVNEIHGQHFRHHPPGVKNKENSEQAKMVPAHMTANRHSSPVTPELHGGAGYPTPHGVPGMMGNPPLPAAAXXXXXXXXGHMTPGTQAAMAMSNMSLSPMPHASNAWSPQQPGQGIDALTLTPAFGGSGVSTPLPDGGDAAS 459
            K +VPHY+MHGVNEIHGQHFRHHPPGVK KEN+EQAK+VPAHMT+N  SSPVTPEL GGAGYP+PHG PGMMGNP L A A        GHMTPGTQAA AMSNMSLSP PHASNAWSPQ PGQG+DALTLTPAF G GV     DGGDAAS
Sbjct:  142 KGKVPHYEMHGVNEIHGQHFRHHPPGVKTKENAEQAKVVPAHMTSNPCSSPVTPELQGGAGYPSPHGGPGMMGNPALTACAPATGG---GHMTPGTQAATAMSNMSLSPTPHASNAWSPQ-PGQGVDALTLTPAFAGPGVG----DGGDAAS 285
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15421.3799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGR5_ECTSI2.160e-10575.85Transcription factor prr1 (Pombe response regulato... [more]
A0A6H5JIP5_9PHAE1.100e-6877.63HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15421contigE-fasciculatus_F_contig15421:16..2400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-04_001150.1
Exons3
Model size711
Cds size684
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15421.3799.1prot_E-fasciculatus_F_contig15421.3799.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15421 16..2373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.501396-CDS-E-fasciculatus_F_contig15421:15..3631622928020.501396-CDS-E-fasciculatus_F_contig15421:15..363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15421 16..363 -
1695995791.5024939-CDS-E-fasciculatus_F_contig15421:15..3631695995791.5024939-CDS-E-fasciculatus_F_contig15421:15..363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15421 16..363 -
1622928020.5242586-CDS-E-fasciculatus_F_contig15421:956..11961622928020.5242586-CDS-E-fasciculatus_F_contig15421:956..1196Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15421 957..1196 -
1695995791.5148294-CDS-E-fasciculatus_F_contig15421:956..11961695995791.5148294-CDS-E-fasciculatus_F_contig15421:956..1196Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15421 957..1196 -
1622928020.5459852-CDS-E-fasciculatus_F_contig15421:2277..23731622928020.5459852-CDS-E-fasciculatus_F_contig15421:2277..2373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15421 2278..2373 -
1695995791.5249338-CDS-E-fasciculatus_F_contig15421:2277..23731695995791.5249338-CDS-E-fasciculatus_F_contig15421:2277..2373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15421 2278..2373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.5675278-UTR-E-fasciculatus_F_contig15421:2373..24001622928020.5675278-UTR-E-fasciculatus_F_contig15421:2373..2400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15421 2374..2400 -
1695995791.5363266-UTR-E-fasciculatus_F_contig15421:2373..24001695995791.5363266-UTR-E-fasciculatus_F_contig15421:2373..2400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15421 2374..2400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15421.3799.1

>prot_E-fasciculatus_F_contig15421.3799.1 ID=prot_E-fasciculatus_F_contig15421.3799.1|Name=mRNA_E-fasciculatus_F_contig15421.3799.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=228bp
MHGVNEIHGQHFRHHPPGVKNKENSEQAKMVPAHMTANRHSSPVTPELHG
GAGYPTPHGVPGMMGNPPLPAAAAAPAPGGGGHMTPGTQAAMAMSNMSLS
PMPHASNAWSPQQPGQGIDALTLTPAFGGSGVSTPLPDGGDAASGPAGGA
TAGAGSLNEKHLGMGKLGSGGSGGSGGGGSSGGGERAGMRMAYWEKSRKR
RTLSAQLVFPVQPPNNTETIDQPDPSLC
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mRNA from alignment at E-fasciculatus_F_contig15421:16..2400-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15421.3799.1 ID=mRNA_E-fasciculatus_F_contig15421.3799.1|Name=mRNA_E-fasciculatus_F_contig15421.3799.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2385bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15421:16..2400- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAAAAACTCAGGTGCCCCACTACGACATGCACGGCGTGAACGAGATTCA
TGGGCAGCATTTCCGGCACCATCCCCCGGGCGTGAAGAACAAGGAGAACA
GCGAGCAGGCGAAGATGGTGCCGGTGAGAGTTGTCTCTCGCGCCGAAGAT
GTTGTCGTCGTGGTCGTCGTCCATGTCGATGGTTGTTGTAGGCGTTTGAG
GTGGAAGTGCTGCTGTGTTGGTATGTTGGTGGTGATGATGTGGTGGTGGT
GGTGGTTGGGGGTGCTGCGGTGTTGTTGCCAGAATTCGTTCCGCTCGCCT
CCGCTTCAACAGGCAGTACGGTGGCTCCTGTCCAGAGTTGCTTGTGCTTT
CAAAGCTTCGAAGGTGTTAACAGCAGTAGTTCGAATCCGAGGTCGCTTCG
AAAGATCCGTCTCCGCCTTCCTCCACCACCACCACCACCAGCAGGAGCAG
GAGCAGCTTTTCCCACTATTTCTCTCGCCCAGCAAGCAGCATGCACATCT
ATCTAACGCTGCCTGTGCCCCCGCCCGCGTACAATATACCATGCATATGT
TGCTGGAACGGTCCACAATTAGGCAGCGTGTGGGGTTGTAATGTTTTTGG
TTATAATTTTTCTATTTTCAAGGTTATGGGGACGCCATACATACAATTTA
GTGTGGGTGTGTTTTGGTCTTGCTGGTGCTTTTTTTTTCCTTCGATTTTT
TATTTTTCGGTTTTCGGGACACCACCGTCGAGTCGAGGACAGGAATAGTG
ACTTGCTTGTAAGACGAGTTTAGTGTAAAGATCCTCGGCTGTGAGCGCTT
TTTGGCTGTGTTTGCCCTAGAATGCCTTGATTTTCTTGAACGGTTTAGCC
ATTGTTTTTGTTTTTCTTACGTCGGGTGAAGTGCTGTGTTGCTTACGCAA
AGTTGCCTCTTGATTTCTTAGATGTACCTGCAGTTTTCTCAACTACGGGC
ATCCTCTCTGCTTGCTGTACCCGTGGACCCGCACTTGCTGTGCCCAACCA
GGCCCACATGATGGCAAACCCACGCTCTTCGCCAGTGACCCCGGAACTTG
ACGGCGGCCATTGTTTTCTCAAAATGTAACTGTCATTTAGTCAAAACTGC
GGGGTCTACTATTCCAGCAGGCCTCATGCAATATATCTGCTGTGTCTTTT
CTCATCTGCGGCGACCCGCACTTTGGCCGTACCCCTAAAATTCTATTCCC
GCAGGCCCACATGACGGCAAACCGCCACTCTTCTCCGGTGACCCCGGAGC
TTCACGGCGGAGCGGGGTACCCGACGCCCCACGGGGTGCCGGGGATGATG
GGAAACCCCCCCCTCCCTGCCGCCGCCGCCGCCCCTGCCCCCGGTGGTGG
GGGGCACATGACCCCCGGCACCCAGGCAGCCATGGCGATGTCGAACATGT
CGCTGAGCCCGATGCCGCATGCCAGCAACGCGTGGTCGCCACAGGTTCGT
TCGTGTGTGTGTTGCGTGTGTGTTTTGTTTTTGTTGGGTGGGAAGTTTGT
TTATGTTTTGTGTGGGTGTGTTCCGACCGTGCTACAATAGCCGGCTGACC
AGTGGAAAGACGTCGATTGTCAGTGCGGTGTGTGTGTGTGTGTTGGTTGG
TTGGTAGCATTGGCCGCGCTAACCGTCTGACGAATAAATAGACGTCAGTC
TCAGTGCGGTTGAAGACGCATAGCGCCTTTTGTGTGTGTATGTGCTTGTT
TTTCTCTGTTTATGAATGTTTTATGTCTGCATCGACCGCGCCACATATCA
GGCTGACCACGCAAGATTACGTGTCGGAATGAAGTACAGAGCTGTTTCGT
ACGTATCTCTTCCAAAAGTCTTGAAGGCCATTCCTTCCGACCTTCATATG
ACAGTCATGGTGTGAGCCAAGTGTGGCGCCGTGCCTGATCGTCTAATCAT
GCCGAGTAAAGGACGCGCATGCTACATCATTGTCTCGACAGCAATCATTC
CTTCTGCCAGGCCTGATGGGTCTCGTCAGCGAATTTAGCGCCCAAGTGTT
TGATGTTTGTCTTGACAACAATCGTTCCTTTTGGCAGCAGCCCGGCCAGG
GCATCGACGCCTTGACTCTCACGCCGGCGTTTGGCGGCTCGGGCGTGAGC
ACGCCCCTTCCCGACGGGGGCGACGCAGCGTCAGGACCAGCTGGAGGGGC
CACGGCTGGAGCAGGAAGCTTGAATGAGAAGCACCTGGGCATGGGGAAGC
TCGGCAGCGGGGGCTCCGGCGGGAGCGGGGGGGGGGGCAGCAGCGGCGGC
GGGGAGCGCGCGGGGATGCGCATGGCGTACTGGGAGAAGAGTCGAAAAAG
GAGGACTCTGTCGGCTCAGCTGGTGTTCCCGGTGCAGCCCCCAAATAACA
CGGAGACAATCGACCAGCCCGATCCCAGTCTTTGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15421:16..2400-

>mRNA_E-fasciculatus_F_contig15421.3799.1 ID=mRNA_E-fasciculatus_F_contig15421.3799.1|Name=mRNA_E-fasciculatus_F_contig15421.3799.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15421:16..2400- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACGGCGTGAACGAGATTCATGGGCAGCATTTCCGGCACCATCCCCC
GGGCGTGAAGAACAAGGAGAACAGCGAGCAGGCGAAGATGGTGCCGATGC
ACGGCGTGAACGAGATTCATGGGCAGCATTTCCGGCACCATCCCCCGGGC
GTGAAGAACAAGGAGAACAGCGAGCAGGCGAAGATGGTGCCGGCCCACAT
GACGGCAAACCGCCACTCTTCTCCGGTGACCCCGGAGCTTCACGGCGGAG
CGGGGTACCCGACGCCCCACGGGGTGCCGGGGATGATGGGAAACCCCCCC
CTCCCTGCCGCCGCCGCCGCCCCTGCCCCCGGTGGTGGGGGGCACATGAC
CCCCGGCACCCAGGCAGCCATGGCGATGTCGAACATGTCGCTGAGCCCGA
TGCCGCATGCCAGCAACGCGTGGTCGCCACAGGCCCACATGACGGCAAAC
CGCCACTCTTCTCCGGTGACCCCGGAGCTTCACGGCGGAGCGGGGTACCC
GACGCCCCACGGGGTGCCGGGGATGATGGGAAACCCCCCCCTCCCTGCCG
CCGCCGCCGCCCCTGCCCCCGGTGGTGGGGGGCACATGACCCCCGGCACC
CAGGCAGCCATGGCGATGTCGAACATGTCGCTGAGCCCGATGCCGCATGC
CAGCAACGCGTGGTCGCCACAGCAGCCCGGCCAGGGCATCGACGCCTTGA
CTCTCACGCCGGCGTTTGGCGGCTCGGGCGTGAGCACGCCCCTTCCCGAC
GGGGGCGACGCAGCGTCAGGACCAGCTGGAGGGGCCACGGCTGGAGCAGG
AAGCTTGAATGAGAAGCACCTGGGCATGGGGAAGCTCGGCAGCGGGGGCT
CCGGCGGGAGCGGGGGGGGGGGCAGCAGCGGCGGCGGGGAGCGCGCGGGG
ATGCGCATGGCGTACTGGGAGAAGAGTCGAAAAAGGAGGACTCTGTCGGC
TCAGCTGGTGTTCCCGGTGCAGCCCCCAAATAACACGGAGACAATCGACC
AGCCCGATCCCAGTCTTTGCCAGCCCGGCCAGGGCATCGACGCCTTGACT
CTCACGCCGGCGTTTGGCGGCTCGGGCGTGAGCACGCCCCTTCCCGACGG
GGGCGACGCAGCGTCAGGACCAGCTGGAGGGGCCACGGCTGGAGCAGGAA
GCTTGAATGAGAAGCACCTGGGCATGGGGAAGCTCGGCAGCGGGGGCTCC
GGCGGGAGCGGGGGGGGGGGCAGCAGCGGCGGCGGGGAGCGCGCGGGGAT
GCGCATGGCGTACTGGGAGAAGAGTCGAAAAAGGAGGACTCTGTCGGCTC
AGCTGGTGTTCCCGGTGCAGCCCCCAAATAACACGGAGACAATCGACCAG
CCCGATCCCAGTCTTTGC
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