mRNA_E-fasciculatus_F_contig154.3785.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig154.3785.1
Unique NamemRNA_E-fasciculatus_F_contig154.3785.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig154.3785.1 vs. uniprot
Match: A0A6H5KEK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.240e-14
Identity = 64/106 (60.38%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:  136 LLAPLRAISSQPARFTNADVLRGMSSRATTAPASSSSG--------VTGPAAAGRPGFSGAAAAVGQEGGVGGHSSSSSTGGESSGLGFAVFRDDVGDAAAPGANG 429
            LLAPLR  SSQP RFTNADVLRGMS RATTAPASS++G        VT  A  GR G S AAAA              +  GESSGLGFAVFRDD  DAAAP A+G
Sbjct:  110 LLAPLRDRSSQPTRFTNADVLRGMS-RATTAPASSTTGPSSSISDRVTAQAPTGRLGGSDAAAAA-------------AAVGESSGLGFAVFRDDARDAAAPAASG 201
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig154.3785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEK5_9PHAE3.240e-1460.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig154contigE-fasciculatus_F_contig154:1570..2386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size682
Cds size681
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928016.6983352-CDS-E-fasciculatus_F_contig154:1569..22101622928016.6983352-CDS-E-fasciculatus_F_contig154:1569..2210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig154 1570..2210 -
1695995790.123757-CDS-E-fasciculatus_F_contig154:1569..22101695995790.123757-CDS-E-fasciculatus_F_contig154:1569..2210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig154 1570..2210 -
1622928016.7177-CDS-E-fasciculatus_F_contig154:2346..23861622928016.7177-CDS-E-fasciculatus_F_contig154:2346..2386Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig154 2347..2386 -
1695995790.133326-CDS-E-fasciculatus_F_contig154:2346..23861695995790.133326-CDS-E-fasciculatus_F_contig154:2346..2386Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig154 2347..2386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig154.3785.1prot_E-fasciculatus_F_contig154.3785.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig154 1570..2386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig154.3785.1

>prot_E-fasciculatus_F_contig154.3785.1 ID=prot_E-fasciculatus_F_contig154.3785.1|Name=mRNA_E-fasciculatus_F_contig154.3785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=227bp
LGRFRQRQRCRCRSAAAAAADVPRRRARLGALAVGVSGGGGGGGGLLAPL
RAISSQPARFTNADVLRGMSSRATTAPASSSSGVTGPAAAGRPGFSGAAA
AVGQEGGVGGHSSSSSTGGESSGLGFAVFRDDVGDAAAPGANGDGAAASA
GEGGGGRGGGAAAQGLGFSVFEDAAGDDKVGGGGRGLAGATSGLGFSVFQ
DDGGDGASTGDVVAVEASAEAAAESVA
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mRNA from alignment at E-fasciculatus_F_contig154:1570..2386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig154.3785.1 ID=mRNA_E-fasciculatus_F_contig154.3785.1|Name=mRNA_E-fasciculatus_F_contig154.3785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=817bp|location=Sequence derived from alignment at E-fasciculatus_F_contig154:1570..2386- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGGCCGTTTCCGACAGCGGCAGCGATGCCGATGCCGATGCCGATAGCG
ACGGCGACAATGATGGCGGCGGCGGCGGCGGCGGCAGTGGTGACAACCCC
TCGAGCTCCGCGGCGGCGGCGGTCGGACTGACGAGGACCCTGCCGAGAAA
TGGTGCCAACCATGGTGACGGCGAAGCCGCCGCCGCCGCCGCTGCCGATG
TCCCGAGACGGCGTGCCCGCTTGGGGGCGCTCGCCGTTGGCGTTAGCGGC
GGCGGCGGCGGGGGAGGCGGGCTGCTGGCGCCGCTCCGTGCTATTAGCTC
CCAGCCGGCGCGGTTCACGAACGCTGATGTTCTCCGCGGGATGTCTTCGA
GAGCCACGACCGCGCCGGCTTCGAGCAGCAGCGGTGTGACGGGTCCGGCC
GCCGCCGGCCGGCCAGGGTTTTCGGGAGCGGCGGCGGCGGTGGGGCAAGA
AGGAGGAGTCGGTGGTCATTCGTCGTCATCGTCGACGGGCGGCGAGTCCT
CGGGGCTTGGGTTTGCGGTGTTCCGCGACGACGTGGGGGATGCTGCTGCT
CCTGGTGCTAATGGTGACGGTGCTGCTGCTTCTGCCGGTGAAGGGGGTGG
CGGTCGGGGTGGTGGTGCTGCTGCTCAGGGCTTGGGGTTCTCCGTCTTCG
AGGATGCCGCCGGTGACGATAAGGTTGGCGGCGGCGGTCGCGGCCTGGCC
GGGGCCACGTCCGGCCTCGGATTCTCCGTCTTCCAGGACGACGGTGGAGA
TGGTGCAAGTACGGGCGATGTTGTTGCCGTCGAGGCTAGCGCGGAGGCGG
CGGCGGAATCGGTGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig154:1570..2386-

>mRNA_E-fasciculatus_F_contig154.3785.1 ID=mRNA_E-fasciculatus_F_contig154.3785.1|Name=mRNA_E-fasciculatus_F_contig154.3785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1362bp|location=Sequence derived from alignment at E-fasciculatus_F_contig154:1570..2386- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGGCCGTTTCCGACAGCGGCAGCGATGCCGATGCCGATCTCGGCCGTT
TCCGACAGCGGCAGCGATGCCGATGCCGATCCGCCGCCGCCGCCGCTGCC
GATGTCCCGAGACGGCGTGCCCGCTTGGGGGCGCTCGCCGTTGGCGTTAG
CGGCGGCGGCGGCGGGGGAGGCGGGCTGCTGGCGCCGCTCCGTGCTATTA
GCTCCCAGCCGGCGCGGTTCACGAACGCTGATGTTCTCCGCGGGATGTCT
TCGAGAGCCACGACCGCGCCGGCTTCGAGCAGCAGCGGTGTGACGGGTCC
GGCCGCCGCCGGCCGGCCAGGGTTTTCGGGAGCGGCGGCGGCGGTGGGGC
AAGAAGGAGGAGTCGGTGGTCATTCGTCGTCATCGTCGACGGGCGGCGAG
TCCTCGGGGCTTGGGTTTGCGGTGTTCCGCGACGACGTGGGGGATGCTGC
TGCTCCTGGTGCTAATGGTGACGGTGCTGCTGCTTCTGCCGGTGAAGGGG
GTGGCGGTCGGGGTGGTGGTGCTGCTGCTCAGGGCTTGGGGTTCTCCGTC
TTCGAGGATGCCGCCGGTGACGATAAGGTTGGCGGCGGCGGTCGCGGCCT
GGCCGGGGCCACGTCCGGCCTCGGATTCTCCGTCTTCCAGGACGACGGTG
GAGATGGTGCAAGTACGGGCGATGTTGTTGCCGTCGAGGCTAGCGCGGAG
GCGGCGGCGGAATCGGTGGCGCCGCCGCCGCCGCCGCTGCCGATGTCCCG
AGACGGCGTGCCCGCTTGGGGGCGCTCGCCGTTGGCGTTAGCGGCGGCGG
CGGCGGGGGAGGCGGGCTGCTGGCGCCGCTCCGTGCTATTAGCTCCCAGC
CGGCGCGGTTCACGAACGCTGATGTTCTCCGCGGGATGTCTTCGAGAGCC
ACGACCGCGCCGGCTTCGAGCAGCAGCGGTGTGACGGGTCCGGCCGCCGC
CGGCCGGCCAGGGTTTTCGGGAGCGGCGGCGGCGGTGGGGCAAGAAGGAG
GAGTCGGTGGTCATTCGTCGTCATCGTCGACGGGCGGCGAGTCCTCGGGG
CTTGGGTTTGCGGTGTTCCGCGACGACGTGGGGGATGCTGCTGCTCCTGG
TGCTAATGGTGACGGTGCTGCTGCTTCTGCCGGTGAAGGGGGTGGCGGTC
GGGGTGGTGGTGCTGCTGCTCAGGGCTTGGGGTTCTCCGTCTTCGAGGAT
GCCGCCGGTGACGATAAGGTTGGCGGCGGCGGTCGCGGCCTGGCCGGGGC
CACGTCCGGCCTCGGATTCTCCGTCTTCCAGGACGACGGTGGAGATGGTG
CAAGTACGGGCGATGTTGTTGCCGTCGAGGCTAGCGCGGAGGCGGCGGCG
GAATCGGTGGCG
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